Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046822 Camellia sinensis var. sinensis HOM05D007988 ORTHO05D009824 8.0e-147 523.9 289 100.0
Rhsim11G0074200 Rhododendron simsii HOM05D007988 ORTHO05D009824 2.3e-61 240.0 306 55.9
GSVIVG01008783001 Vitis vinifera HOM05D007988 ORTHO05D009824 1.1e-55 221.1 303 53.1
QL09p030989 Quercus lobata HOM05D007988 ORTHO05D009824 1.5e-55 220.7 303 50.8
Duzib116G0104 Durio zibethinus HOM05D007988 ORTHO05D009824 1.9e-55 220.3 309 51.5
TAR381G0794 Trochodendron aralioides HOM05D007988 ORTHO05D009824 5.5e-55 218.8 300 51.7
CiPaw.15G029500 Carya illinoinensis HOM05D007988 ORTHO05D009824 2.6e-52 209.9 305 50.8
Lj4P663T19 Lonicera japonica HOM05D007988 ORTHO05D009824 4.8e-51 205.7 320 49.7
Haze_17653 Corylus avellana HOM05D007988 ORTHO05D009824 1.1e-50 204.5 303 51.5
Duzib093G1224 Durio zibethinus HOM05D007988 ORTHO05D009824 1.1e-50 204.5 314 49.7
Thecc.08G135700 Theobroma cacao HOM05D007988 ORTHO05D009824 3.1e-50 203.0 306 51.3
Lj4P666T14 Lonicera japonica HOM05D007988 ORTHO05D009824 4.1e-50 202.6 314 48.4
Duzib041G0811 Durio zibethinus HOM05D007988 ORTHO05D009824 7.0e-50 201.8 312 50.6
Ciclev10004037m.g Citrus clementina HOM05D007988 ORTHO05D009824 9.1e-50 201.4 316 52.2
Potri.002G076200 Populus trichocarpa HOM05D007988 ORTHO05D009824 9.1e-50 201.4 310 46.8
CiPaw.16G021200 Carya illinoinensis HOM05D007988 ORTHO05D009824 7.7e-49 198.4 308 50.3
Gohir.D05G240900 Gossypium hirsutum HOM05D007988 ORTHO05D009824 2.3e-48 196.8 322 48.8
Gorai.009G250000 Gossypium raimondii HOM05D007988 ORTHO05D009824 2.3e-48 196.8 322 48.8
Manes.02G170000 Manihot esculenta HOM05D007988 ORTHO05D009824 8.6e-48 194.9 320 48.1
Gohir.A05G239200 Gossypium hirsutum HOM05D007988 ORTHO05D009824 8.0e-46 188.3 319 48.3
Actinidia29496 Actinidia chinensis HOM05D000744 ORTHO05D000332 2.0e-44 183.7 302 49.0
TWI60G0631 Tripterygium wilfordii HOM05D007988 ORTHO05D009824 7.5e-44 181.8 318 43.1
Cc10_g13460 Coffea canephora HOM05D007988 ORTHO05D009824 1.2e-41 174.5 323 46.1
COL.COLO4_33785 Corchorus olitorius HOM05D007988 ORTHO05D009824 1.6e-41 174.1 318 47.8
Sabra05G0140800 Salix brachista HOM05D007988 ORTHO05D009824 1.9e-39 167.2 304 43.8
Nn5g28477 Nelumbo nucifera HOM05D007988 ORTHO05D009824 1.2e-38 164.5 309 45.0
TWI34G1662 Tripterygium wilfordii HOM05D007988 ORTHO05D009824 1.2e-38 164.5 324 39.5
Prupe.1G442100 Prunus persica HOM05D007988 ORTHO05D009824 2.3e-37 160.2 310 45.2
Nn1g08990 Nelumbo nucifera HOM05D007988 ORTHO05D009824 5.2e-37 159.1 315 40.0
MD15G1088100 Malus domestica HOM05D007988 ORTHO05D009824 5.8e-36 155.6 319 44.8
Oeu022143.1 Olea europaea HOM05D007988 ORTHO05D009824 9.8e-36 154.8 330 38.2
Dinv37735 Davidia involucrata HOM05D007988 ORTHO05D009824 6.4e-35 152.1 197 47.7
RcHm_v2.0_Chr6g0306951 Rosa chinensis HOM05D007988 ORTHO05D009824 1.2e-33 147.9 324 43.8
Glyma.04G244300 Glycine max HOM05D007988 ORTHO05D009824 1.5e-31 141.0 332 43.7
Atru.chr13.1616 Acer truncatum HOM05D007988 ORTHO05D009824 9.5e-31 138.3 324 42.0
Lalb_Chr10g0101461 Lupinus albus HOM05D007988 ORTHO05D009824 1.6e-30 137.5 299 42.1
FvH4_2g35040 Fragaria vesca HOM05D007988 ORTHO05D009824 1.8e-29 134.0 325 43.4
Phvul.009G131400 Phaseolus vulgaris HOM05D007988 ORTHO05D009824 1.8e-29 134.0 322 39.1
CSS0018515 Camellia sinensis var. sinensis HOM05D007988 ORTHO05D009824 1.5e-28 131.0 153 55.6
Glyma.06G119000 Glycine max HOM05D007988 ORTHO05D009824 5.8e-28 129.0 335 42.7
FAN27G1764 Fragaria x ananassa HOM05D007988 ORTHO05D009824 9.8e-28 128.3 325 43.4
Cpa.g.sc64.159 Carica papaya HOM05D007988 ORTHO05D009824 1.7e-27 127.5 338 41.4
Lj1g0027207 Lotus japonicus HOM05D007988 ORTHO05D009824 4.1e-26 122.9 333 38.7
SGA_v2.0_scaffold52G18904 Striga asiatica HOM05D007988 ORTHO05D009824 5.4e-26 122.5 293 36.9
TPR.G6352 Trifolium pratense HOM05D007988 ORTHO05D009824 2.1e-25 120.6 311 43.7
FAN15G1013 Fragaria x ananassa HOM05D007988 ORTHO05D009824 2.7e-25 120.2 222 45.9
Medtr3g088735 Medicago truncatula HOM05D007988 ORTHO05D009824 1.0e-24 118.2 306 42.5
Eucgr.F02525 Eucalyptus grandis HOM05D007988 ORTHO05D009824 1.7e-24 117.5 335 37.0
VMungo1309G2256 Vigna mungo HOM05D007988 ORTHO05D009824 1.7e-24 117.5 319 40.4
Ca_16619_v3 Cicer arietinum L. HOM05D007988 ORTHO05D009824 8.6e-24 115.2 314 41.7
Sed0016946 Sechium edule HOM05D007988 ORTHO05D009824 1.9e-23 114.0 307 38.4
CAN.G46.16 Capsicum annuum HOM05D007988 ORTHO05D009824 3.3e-23 113.2 340 38.5
HanXRQChr09g0256671 Helianthus annuus HOM05D007988 ORTHO05D009824 3.6e-22 109.8 303 38.6
MBI06_g32176_MAGBIO Magnolia biondii HOM05D007988 ORTHO05D009824 6.2e-22 109.0 345 35.9
arahy.Tifrunner.gnm1.ann1.GX31L7 Arachis hypogaea HOM05D007988 ORTHO05D009824 1.1e-21 108.2 316 39.9
ECA232G2067 Erigeron canadensis HOM05D007988 ORTHO05D009824 1.4e-21 107.8 316 39.2
arahy.Tifrunner.gnm1.ann1.1JY9DA Arachis hypogaea HOM05D007988 ORTHO05D009824 2.6e-20 103.6 317 38.5
Psat0s3071g0240 Pisum sativum HOM05D007988 ORTHO05D009824 2.2e-19 100.5 225 41.8
CANSAT25G2204 Cannabis sativa HOM05D007988 ORTHO05D009824 1.6e-17 94.4 375 32.8
Sopen04g026140 Solanum pennellii HOM05D007988 ORTHO05D009824 2.7e-17 93.6 341 36.1
AUR62007686 Chenopodium quinoa HOM05D007988 ORTHO05D009824 4.6e-17 92.8 345 35.4
DCAR_003597 Daucus carota HOM05D007988 ORTHO05D009824 7.8e-17 92.0 325 35.7
EL10Ac1g01385 Beta vulgaris HOM05D007988 ORTHO05D009824 2.3e-16 90.5 343 35.9
Aqoxy5G02290 Aquilegia oxysepala HOM05D007988 ORTHO05D009824 4.3e-15 86.3 400 31.8
MELO3C008455.2 Cucumis melo HOM05D007988 ORTHO05D009824 4.3e-15 86.3 315 35.6
Migut.C01082 Erythranthe guttata HOM05D007988 ORTHO05D009824 2.8e-14 83.6 322 36.0
FAN20G0590 Fragaria x ananassa HOM05D007988 ORTHO05D009824 6.2e-14 82.4 177 42.9
THA.LOC104813286 Tarenaya hassleriana HOM05D012069 ORTHO05D009824 1.1e-13 81.6 335 35.5
Lalb_Chr04g0253601 Lupinus albus HOM05D007988 ORTHO05D009824 2.4e-13 80.5 157 43.3
Sp1g19040 Schrenkiella parvula HOM05D012069 ORTHO05D009824 2.6e-12 77.0 338 33.7
Hund26769 Selenicereus undatus HOM05D007988 ORTHO05D009824 2.6e-12 77.0 364 30.5
ClCG08G006150 Citrullus lanatus HOM05D007988 ORTHO05D009824 1.3e-11 74.7 308 34.1
AL1G34650 Arabidopsis lyrata HOM05D012069 ORTHO05D009824 2.9e-11 73.6 288 32.3
AT1G21510 Arabidopsis thaliana HOM05D012069 ORTHO05D009824 4.9e-11 72.8 337 30.3
PGSC0003DMG400002385 Solanum tuberosum HOM05D007988 ORTHO05D009824 1.4e-10 71.2 196 36.2
CsaV3_6G031310 Cucumis sativus L. HOM05D007988 ORTHO05D009824 1.9e-10 70.9 302 32.8
Carub.0001s2093 Capsella rubella HOM05D012069 ORTHO05D009824 3.2e-10 70.1 339 33.0
CARHR021870 Cardamine hirsuta HOM05D012069 ORTHO05D009824 4.2e-10 69.7 339 32.2
BcaB07g32147 Brassica carinata HOM05D012069 ORTHO05D009824 1.2e-09 68.2 358 31.6
Lalb_Chr08g0240981 Lupinus albus HOM05D007988 ORTHO05D009824 1.6e-09 67.8 190 36.8
AUR62013453 Chenopodium quinoa HOM05D007988 ORTHO05D009824 6.0e-09 65.9 223 34.1
PSO528G0108 Papaver somniferum HOM05D047919 ORTHO05D050194 1.0e-08 65.1 306 32.4
A06p17540 Brassica napus HOM05D012069 ORTHO05D009824 2.5e-07 60.5 338 31.1
BraA06t24850Z Brassica rapa HOM05D012069 ORTHO05D009824 4.3e-07 59.7 340 31.8
BcaC05g26060 Brassica carinata HOM05D012069 ORTHO05D009824 9.6e-07 58.5 344 32.3
BolC5t30735H Brassica oleracea HOM05D012069 ORTHO05D009824 9.6e-07 58.5 344 32.3
Sed0000785 Sechium edule HOM05D007988 ORTHO05D009824 9.6e-07 58.5 171 40.4
C05p20410 Brassica napus HOM05D012069 ORTHO05D009824 1.3e-06 58.2 344 32.3
Thhalv10009526m.g Eutrema salsugineum HOM05D012069 ORTHO05D009824 1.3e-06 58.2 347 29.7


User provided reference genes

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