Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046810 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D006639 2.2e-23 111.3 51 100.0
CSS0015538 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D006639 4.3e-19 97.1 62 79.0
CSS0005745 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D006639 1.6e-18 95.1 62 77.4
CSS0022322 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D006639 3.1e-17 90.9 62 75.8
CSS0018434 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D006639 1.7e-15 85.1 59 72.9
CSS0008706 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D006639 1.4e-14 82.0 59 71.2
Dinv11213 Davidia involucrata HOM05D000050 ORTHO05D006639 2.3e-12 74.7 39 82.1
Actinidia08894 Actinidia chinensis HOM05D000050 ORTHO05D006639 5.1e-12 73.6 41 78.0
Dinv23194 Davidia involucrata HOM05D000050 ORTHO05D006639 1.1e-11 72.4 39 82.1
Lj5A91T48 Lonicera japonica HOM05D000050 ORTHO05D006639 1.6e-10 68.6 39 74.4
Rhsim12G0178500 Rhododendron simsii HOM05D000050 ORTHO05D006639 6.2e-10 66.6 43 74.4
Lj9A483T63 Lonicera japonica HOM05D000050 ORTHO05D006639 8.1e-10 66.2 59 57.6
ECA232G2135 Erigeron canadensis HOM05D000050 ORTHO05D006639 1.1e-09 65.9 40 72.5
Gohir.D12G194800 Gossypium hirsutum HOM05D000050 ORTHO05D006639 1.8e-09 65.1 59 54.2
Sc10g0010690 Simmondsia chinensis HOM05D000050 ORTHO05D006639 2.4e-09 64.7 39 71.8
Sc10g0010780 Simmondsia chinensis HOM05D000050 ORTHO05D006639 2.4e-09 64.7 39 71.8
EL10Ac5g11339 Beta vulgaris HOM05D000050 ORTHO05D006639 3.1e-09 64.3 39 69.2
Hund02480 Selenicereus undatus HOM05D000050 ORTHO05D006639 3.1e-09 64.3 39 69.2
Cc04_g09520 Coffea canephora HOM05D000050 ORTHO05D006639 4.0e-09 63.9 41 68.3
Duzib068G1461 Durio zibethinus HOM05D000050 ORTHO05D006639 4.0e-09 63.9 59 52.5
THA.LOC104825033 Tarenaya hassleriana HOM05D000050 ORTHO05D006639 4.0e-09 63.9 41 68.3
Ah.11g046520 Amaranthus hybridus HOM05D000050 ORTHO05D006639 5.3e-09 63.5 41 63.4
Carub.0008s1086 Capsella rubella HOM05D000050 ORTHO05D006639 5.3e-09 63.5 42 64.3
AUR62029535 Chenopodium quinoa HOM05D000050 ORTHO05D006639 5.3e-09 63.5 39 64.1
AUR62034792 Chenopodium quinoa HOM05D000050 ORTHO05D006639 5.3e-09 63.5 39 64.1
Lsat_1_v5_gn_4_83541 Lactuca sativa HOM05D000050 ORTHO05D006639 5.3e-09 63.5 39 71.8
Thecc.03G136900 Theobroma cacao HOM05D000050 ORTHO05D006639 5.3e-09 63.5 59 52.5
vmacro16743 Vaccinium macrocarpon HOM05D000050 ORTHO05D006639 5.3e-09 63.5 44 70.5
DCAR_016360 Daucus carota HOM05D000050 ORTHO05D006639 6.9e-09 63.2 42 71.4
Thhalv10014747m.g Eutrema salsugineum HOM05D000050 ORTHO05D006639 6.9e-09 63.2 41 65.9
Gohir.A12G192700 Gossypium hirsutum HOM05D000050 ORTHO05D006639 6.9e-09 63.2 59 52.5
Gorai.008G209500 Gossypium raimondii HOM05D000050 ORTHO05D006639 6.9e-09 63.2 59 52.5
PGR044G0139 Punica granatum HOM05D000050 ORTHO05D006639 6.9e-09 63.2 39 71.8
CDE09G0996 Ceratophyllum demersum HOM05D000050 ORTHO05D006639 9.0e-09 62.8 42 64.3
ClCG06G018200 Citrullus lanatus HOM05D000050 ORTHO05D006639 9.0e-09 62.8 39 66.7
Duzib084G0345 Durio zibethinus HOM05D000050 ORTHO05D006639 9.0e-09 62.8 59 52.5
Nitab4.5_0006857g0010 Nicotiana tabacum HOM05D000050 ORTHO05D006639 9.0e-09 62.8 39 69.2
AL8G25050 Arabidopsis lyrata HOM05D000050 ORTHO05D006639 1.2e-08 62.4 43 62.8
AT5G50870 Arabidopsis thaliana HOM05D000050 ORTHO05D006639 1.2e-08 62.4 43 62.8
MELO3C026177.2 Cucumis melo HOM05D000050 ORTHO05D006639 1.2e-08 62.4 39 66.7
TWI14G0127 Tripterygium wilfordii HOM05D000050 ORTHO05D006639 1.2e-08 62.4 39 69.2
BcaC01g06058 Brassica carinata HOM05D000050 ORTHO05D006639 1.5e-08 62.0 41 65.9
A03p16530 Brassica napus HOM05D000050 ORTHO05D006639 1.5e-08 62.0 41 65.9
C03p19460 Brassica napus HOM05D000050 ORTHO05D006639 1.5e-08 62.0 41 65.9
BolC3t14327H Brassica oleracea HOM05D000050 ORTHO05D006639 1.5e-08 62.0 41 65.9
BraA03t10940Z Brassica rapa HOM05D000050 ORTHO05D006639 1.5e-08 62.0 41 65.9
COL.COLO4_16678 Corchorus olitorius HOM05D000050 ORTHO05D006639 1.5e-08 62.0 41 65.9
Duzib205G0344 Durio zibethinus HOM05D000050 ORTHO05D006639 1.5e-08 62.0 41 65.9
Sp6g13010 Schrenkiella parvula HOM05D000050 ORTHO05D006639 1.5e-08 62.0 41 65.9
CAN.G65.109 Capsicum annuum HOM05D000050 ORTHO05D006639 2.6e-08 61.2 38 71.1
CDE02G3954 Ceratophyllum demersum HOM05D000050 ORTHO05D006639 2.6e-08 61.2 42 61.9
Aa31LG3G7350 Aethionema arabicum HOM05D000050 ORTHO05D006639 3.4e-08 60.8 42 61.9
CARHR257380 Cardamine hirsuta HOM05D000050 ORTHO05D006639 3.4e-08 60.8 43 60.5
CiPaw.12G001900 Carya illinoinensis HOM05D000050 ORTHO05D006639 3.4e-08 60.8 39 66.7
Eucgr.K02668 Eucalyptus grandis HOM05D000050 ORTHO05D006639 3.4e-08 60.8 39 66.7
FAN04G2695 Fragaria x ananassa HOM05D000050 ORTHO05D006639 3.4e-08 60.8 40 70.0
Ciclev10032815m.g Citrus clementina HOM05D000050 ORTHO05D006639 4.4e-08 60.5 39 64.1
TAR622G0592 Trochodendron aralioides HOM05D000050 ORTHO05D006639 4.4e-08 60.5 41 65.9
Ca_16073_v3 Cicer arietinum L. HOM05D000050 ORTHO05D006639 5.8e-08 60.1 39 66.7
CsaV3_1G000230 Cucumis sativus L. HOM05D000050 ORTHO05D006639 5.8e-08 60.1 39 64.1
HanXRQChr16g0498781 Helianthus annuus HOM05D000050 ORTHO05D006639 5.8e-08 60.1 41 65.9
Nitab4.5_0000033g0120 Nicotiana tabacum HOM05D000050 ORTHO05D006639 5.8e-08 60.1 38 71.1
Potri.012G104100 Populus trichocarpa HOM05D000050 ORTHO05D006639 5.8e-08 60.1 39 64.1
CiPaw.11G002500 Carya illinoinensis HOM05D000050 ORTHO05D006639 7.6e-08 59.7 39 66.7
Potri.015G103400 Populus trichocarpa HOM05D000050 ORTHO05D006639 7.6e-08 59.7 39 66.7
FAN08G2874 Fragaria x ananassa HOM05D000050 ORTHO05D006639 9.9e-08 59.3 40 67.5
FAN13G1099 Fragaria x ananassa HOM05D000050 ORTHO05D006639 9.9e-08 59.3 40 67.5
Oeu043134.1 Olea europaea HOM05D000050 ORTHO05D006639 9.9e-08 59.3 60 56.7
Oeu058110.1 Olea europaea HOM05D000050 ORTHO05D006639 9.9e-08 59.3 60 56.7
Peaxi162Scf01064g00237 Petunia axillaris HOM05D000050 ORTHO05D006639 9.9e-08 59.3 38 71.1
Sabra15G0122700 Salix brachista HOM05D000050 ORTHO05D006639 9.9e-08 59.3 39 66.7
Solyc06g072570.4 Solanum lycopersicum HOM05D000050 ORTHO05D006639 9.9e-08 59.3 38 68.4
PGSC0003DMG400027041 Solanum tuberosum HOM05D000050 ORTHO05D006639 9.9e-08 59.3 38 68.4
Cpa.g.sc4.125 Carica papaya HOM05D000050 ORTHO05D006639 1.7e-07 58.5 39 64.1
Manes.06G124300 Manihot esculenta HOM05D000050 ORTHO05D006639 1.7e-07 58.5 39 64.1
Migut.O00353 Erythranthe guttata HOM05D000050 ORTHO05D006639 2.2e-07 58.2 60 55.0
FvH4_5g09050 Fragaria vesca HOM05D000050 ORTHO05D006639 2.2e-07 58.2 40 67.5
FAN18G0611 Fragaria x ananassa HOM05D000050 ORTHO05D006639 2.2e-07 58.2 40 67.5
SalBow1G8711 Salvia bowleyana HOM05D000050 ORTHO05D006639 2.2e-07 58.2 60 56.7
Haze_07125 Corylus avellana HOM05D000050 ORTHO05D006639 2.9e-07 57.8 39 66.7
Sed0004769 Sechium edule HOM05D000050 ORTHO05D006639 2.9e-07 57.8 39 64.1
HanXRQChr09g0273641 Helianthus annuus HOM05D000050 ORTHO05D006639 3.8e-07 57.4 39 66.7
arahy.Tifrunner.gnm1.ann1.Q7T1PG Arachis hypogaea HOM05D000050 ORTHO05D006639 4.9e-07 57.0 39 64.1
arahy.Tifrunner.gnm1.ann1.Z2A8SP Arachis hypogaea HOM05D000050 ORTHO05D006639 4.9e-07 57.0 39 64.1
Glyma.06G166300 Glycine max HOM05D000050 ORTHO05D006639 6.4e-07 56.6 39 64.1
Lalb_Chr11g0069331 Lupinus albus HOM05D000050 ORTHO05D006639 6.4e-07 56.6 39 61.5
Manes.14G047100 Manihot esculenta HOM05D000050 ORTHO05D006639 6.4e-07 56.6 39 61.5
Phvul.009G163400 Phaseolus vulgaris HOM05D000050 ORTHO05D006639 6.4e-07 56.6 59 47.5
Atru.chr6.1890 Acer truncatum HOM05D000050 ORTHO05D006639 8.4e-07 56.2 39 61.5
MSTRG.4623 Avicennia marina HOM05D000050 ORTHO05D006639 8.4e-07 56.2 42 59.5
Lalb_Chr23g0272971 Lupinus albus HOM05D000050 ORTHO05D006639 8.4e-07 56.2 39 64.1
ATR0582G280 Amborella trichopoda HOM05D000050 ORTHO05D006639 1.1e-06 55.8 39 61.5
TPR.G21583 Trifolium pratense HOM05D000050 ORTHO05D006639 1.1e-06 55.8 59 52.5
Aqoxy3G01724 Aquilegia oxysepala HOM05D000050 ORTHO05D006639 1.4e-06 55.5 43 58.1
Glyma.04G199200 Glycine max HOM05D000050 ORTHO05D006639 1.4e-06 55.5 39 64.1
Gohir.D11G040950 Gossypium hirsutum HOM05D000050 ORTHO05D006639 1.4e-06 55.5 42 61.9
Gorai.007G044100 Gossypium raimondii HOM05D000050 ORTHO05D006639 1.4e-06 55.5 42 61.9
Psat5g053600 Pisum sativum HOM05D000050 ORTHO05D006639 1.4e-06 55.5 39 59.0
Gohir.A11G037700 Gossypium hirsutum HOM05D000050 ORTHO05D006639 1.9e-06 55.1 42 61.9
Prupe.5G145200 Prunus persica HOM05D000050 ORTHO05D006639 1.9e-06 55.1 40 65.0
VMungo1309G1070 Vigna mungo HOM05D000050 ORTHO05D006639 1.9e-06 55.1 59 45.8
Nn3g16340 Nelumbo nucifera HOM05D000050 ORTHO05D006639 3.2e-06 54.3 39 61.5
PSO017G1401 Papaver somniferum HOM05D000050 ORTHO05D006639 3.2e-06 54.3 40 60.0
PSO478G4241 Papaver somniferum HOM05D000050 ORTHO05D006639 3.2e-06 54.3 40 60.0
RcHm_v2.0_Chr7g0189161 Rosa chinensis HOM05D000050 ORTHO05D006639 5.4e-06 53.5 40 65.0
Lsat_1_v5_gn_3_31580 Lactuca sativa HOM05D000050 ORTHO05D006639 9.3e-06 52.8 38 52.6


User provided reference genes

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