Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046800 Camellia sinensis var. sinensis HOM05D007555 ORTHO05D009521 4.9e-44 180.6 84 100.0
Actinidia05288 Actinidia chinensis HOM05D007555 ORTHO05D009521 3.3e-24 114.8 86 65.1
Dinv37229 Davidia involucrata HOM05D007555 ORTHO05D009521 2.8e-23 111.7 82 63.4
Hma1.2p1_0111F.1_g053420 Hydrangea macrophylla HOM05D007555 ORTHO05D009521 1.2e-18 96.3 86 55.8
vmacro08680 Vaccinium macrocarpon HOM05D007555 ORTHO05D009521 2.7e-18 95.1 90 54.4
TAR636G0687 Trochodendron aralioides HOM05D007555 ORTHO05D009521 3.5e-18 94.7 81 59.3
VMungo0720G3150 Vigna mungo HOM05D007555 ORTHO05D009521 3.5e-18 94.7 83 54.2
MD12G1131600 Malus domestica HOM05D007555 ORTHO05D009521 7.8e-18 93.6 84 57.1
Phvul.007G161000 Phaseolus vulgaris HOM05D007555 ORTHO05D009521 1.3e-17 92.8 88 48.9
Cfa017464 Carpinus fangiana HOM05D007555 ORTHO05D009521 3.0e-17 91.7 81 53.1
Haze_20696 Corylus avellana HOM05D007555 ORTHO05D009521 5.1e-17 90.9 81 51.9
Prupe.6G246000 Prunus persica HOM05D007555 ORTHO05D009521 8.6e-17 90.1 83 55.4
Glyma.13G134800 Glycine max HOM05D007555 ORTHO05D009521 1.1e-16 89.7 83 54.2
Eucgr.A01211 Eucalyptus grandis HOM05D007555 ORTHO05D009521 1.9e-16 89.0 75 53.3
SGA_v2.0_scaffold94G28647 Striga asiatica HOM05D007555 ORTHO05D009521 2.5e-16 88.6 83 48.2
ATR0693G428 Amborella trichopoda HOM05D007555 ORTHO05D009521 7.3e-16 87.0 71 56.3
Atru.chr8.2503 Acer truncatum HOM05D007555 ORTHO05D009521 9.5e-16 86.7 95 46.3
Nn2g12825 Nelumbo nucifera HOM05D000419 ORTHO05D000692 1.6e-15 85.9 64 62.5
Potri.006G215300 Populus trichocarpa HOM05D007555 ORTHO05D009521 1.6e-15 85.9 80 51.2
PGR004G0254 Punica granatum HOM05D007555 ORTHO05D009521 1.6e-15 85.9 80 53.8
FAN05G0792 Fragaria x ananassa HOM05D007555 ORTHO05D009521 2.1e-15 85.5 82 56.1
Sed0003448 Sechium edule HOM05D007555 ORTHO05D009521 2.8e-15 85.1 78 56.4
ClCG04G008630 Citrullus lanatus HOM05D007555 ORTHO05D009521 3.6e-15 84.7 81 51.9
Ciclev10012844m.g Citrus clementina HOM05D007555 ORTHO05D009521 3.6e-15 84.7 90 47.8
QL07p045973 Quercus lobata HOM05D007555 ORTHO05D009521 4.7e-15 84.3 81 53.1
Migut.L01641 Erythranthe guttata HOM05D007555 ORTHO05D009521 6.2e-15 84.0 93 44.1
RcHm_v2.0_Chr3g0468011 Rosa chinensis HOM05D007555 ORTHO05D009521 6.2e-15 84.0 82 57.3
FvH4_6g14780 Fragaria vesca HOM05D007555 ORTHO05D009521 1.1e-14 83.2 82 56.1
FAN14G0454 Fragaria x ananassa HOM05D007555 ORTHO05D009521 1.1e-14 83.2 82 56.1
FAN09G3476 Fragaria x ananassa HOM05D007555 ORTHO05D009521 2.4e-14 82.0 82 54.9
Nitab4.5_0000643g0170 Nicotiana tabacum HOM05D007555 ORTHO05D009521 2.4e-14 82.0 92 47.8
Lj2A103T67 Lonicera japonica HOM05D007555 ORTHO05D009521 3.1e-14 81.6 86 46.5
Lj5g0027152 Lotus japonicus HOM05D007555 ORTHO05D009521 3.1e-14 81.6 76 48.7
HanXRQChr07g0204191 Helianthus annuus HOM05D007555 ORTHO05D009521 4.0e-14 81.3 87 47.1
COL.COLO4_10316 Corchorus olitorius HOM05D007555 ORTHO05D009521 5.2e-14 80.9 75 50.7
GSVIVG01025579001 Vitis vinifera HOM05D007555 ORTHO05D009521 6.8e-14 80.5 50 64.0
CsaV3_4G024530 Cucumis sativus L. HOM05D007555 ORTHO05D009521 1.2e-13 79.7 81 50.6
unitig_0.g697 Utricularia gibba HOM05D000139 ORTHO05D009521 1.2e-13 79.7 78 47.4
Lsat_1_v5_gn_2_111420 Lactuca sativa HOM05D007555 ORTHO05D009521 1.5e-13 79.3 85 45.9
TWI53G2115 Tripterygium wilfordii HOM05D007555 ORTHO05D009521 1.5e-13 79.3 74 54.1
MELO3C003085.2 Cucumis melo HOM05D007555 ORTHO05D009521 2.0e-13 79.0 72 52.8
PSO384G0825 Papaver somniferum HOM05D007555 ORTHO05D009521 2.0e-13 79.0 49 67.3
Cpa.g.sc114.21 Carica papaya HOM05D007555 ORTHO05D009521 2.6e-13 78.6 74 54.1
PSO339G2355 Papaver somniferum HOM05D007555 ORTHO05D009521 2.6e-13 78.6 54 61.1
Gohir.D01G207300 Gossypium hirsutum HOM05D007555 ORTHO05D009521 4.4e-13 77.8 81 49.4
Gorai.002G252400 Gossypium raimondii HOM05D007555 ORTHO05D009521 4.4e-13 77.8 81 49.4
Sabra06G0166200 Salix brachista HOM05D007555 ORTHO05D009521 4.4e-13 77.8 81 48.1
MSTRG.26743 Avicennia marina HOM05D007555 ORTHO05D009521 5.8e-13 77.4 83 44.6
Thecc.05G049100 Theobroma cacao HOM05D007555 ORTHO05D009521 5.8e-13 77.4 67 53.7
CiPaw.09G185700 Carya illinoinensis HOM05D007555 ORTHO05D009521 9.9e-13 76.6 71 47.9
Gohir.A01G218500 Gossypium hirsutum HOM05D007555 ORTHO05D009521 9.9e-13 76.6 81 48.1
Nitab4.5_0006252g0040 Nicotiana tabacum HOM05D007555 ORTHO05D009521 1.3e-12 76.3 98 46.9
Medtr1g067330 Medicago truncatula HOM05D007555 ORTHO05D009521 2.2e-12 75.5 77 50.6
Solyc09g006000.3 Solanum lycopersicum HOM05D007555 ORTHO05D009521 2.2e-12 75.5 97 40.2
Medtr0016s0020 Medicago truncatula HOM05D007555 ORTHO05D009521 2.9e-12 75.1 77 50.6
DCAR_017749 Daucus carota HOM05D007555 ORTHO05D009521 3.8e-12 74.7 99 43.4
Aqoxy2G01932 Aquilegia oxysepala HOM05D007555 ORTHO05D009521 4.9e-12 74.3 53 64.2
arahy.Tifrunner.gnm1.ann1.ASDQ9T Arachis hypogaea HOM05D007555 ORTHO05D009521 6.4e-12 73.9 45 71.1
arahy.Tifrunner.gnm1.ann1.UIJ5I4 Arachis hypogaea HOM05D007555 ORTHO05D009521 6.4e-12 73.9 44 72.7
PGSC0003DMG400023920 Solanum tuberosum HOM05D007555 ORTHO05D009521 6.4e-12 73.9 99 40.4
Sc08g0004110 Simmondsia chinensis HOM05D007555 ORTHO05D009521 8.4e-12 73.6 63 52.4
Psat6g069400 Pisum sativum HOM05D007555 ORTHO05D009521 1.1e-11 73.2 82 46.3
CAN.G350.37 Capsicum annuum HOM05D007555 ORTHO05D009521 1.9e-11 72.4 43 67.4
Lalb_Chr02g0153401 Lupinus albus HOM05D007555 ORTHO05D009521 3.2e-11 71.6 54 61.1
AT5G02710 Arabidopsis thaliana HOM05D007555 ORTHO05D009521 4.1e-11 71.2 87 44.8
Cc06_g03250 Coffea canephora HOM05D007555 ORTHO05D009521 4.1e-11 71.2 100 39.0
Manes.08G000300 Manihot esculenta HOM05D007555 ORTHO05D009521 4.1e-11 71.2 80 46.2
Ah.01g007300 Amaranthus hybridus HOM05D007555 ORTHO05D009521 5.4e-11 70.9 44 63.6
AUR62030924 Chenopodium quinoa HOM05D007555 ORTHO05D009521 5.4e-11 70.9 60 55.0
CDE05G2937 Ceratophyllum demersum HOM05D007555 ORTHO05D009521 7.1e-11 70.5 46 60.9
ECA238G3221 Erigeron canadensis HOM05D000025 ORTHO05D000040 9.2e-11 70.1 54 55.6
Carub.0006s0147 Capsella rubella HOM05D007555 ORTHO05D009521 1.6e-10 69.3 86 41.9
EL10Ac9g22121 Beta vulgaris HOM05D007555 ORTHO05D009521 4.6e-10 67.8 44 63.6
Lj2P231T24 Lonicera japonica HOM05D007555 ORTHO05D009521 6.0e-10 67.4 86 39.5
Hund06478 Selenicereus undatus HOM05D007555 ORTHO05D009521 6.0e-10 67.4 73 46.6
Aa31LG1G22170 Aethionema arabicum HOM05D007555 ORTHO05D009521 7.8e-10 67.0 67 49.3
THA.LOC104816299 Tarenaya hassleriana HOM05D007555 ORTHO05D009521 7.8e-10 67.0 81 43.2
AL6G11950 Arabidopsis lyrata HOM05D007555 ORTHO05D009521 1.7e-09 65.9 88 40.9
BraA10t45337Z Brassica rapa HOM05D007555 ORTHO05D009521 1.7e-09 65.9 87 41.4
Sp6g39860 Schrenkiella parvula HOM05D007555 ORTHO05D009521 2.3e-09 65.5 71 45.1
A10p33000 Brassica napus HOM05D007555 ORTHO05D009521 3.0e-09 65.1 87 40.2
Thhalv10014815m.g Eutrema salsugineum HOM05D007555 ORTHO05D009521 3.9e-09 64.7 87 41.4
TPR.G7549 Trifolium pratense HOM05D007555 ORTHO05D009521 3.9e-09 64.7 33 75.8
C09p73970 Brassica napus HOM05D007555 ORTHO05D009521 8.7e-09 63.5 87 40.2
BolC9t60132H Brassica oleracea HOM05D007555 ORTHO05D009521 3.3e-08 61.6 88 39.8
BcaC03g16355 Brassica carinata HOM05D007555 ORTHO05D009521 4.3e-08 61.2 92 39.1
BcaNung03281 Brassica carinata HOM05D007555 ORTHO05D009521 4.3e-08 61.2 88 39.8
C02p41790 Brassica napus HOM05D007555 ORTHO05D009521 4.3e-08 61.2 92 39.1
CARHR210660 Cardamine hirsuta HOM05D007555 ORTHO05D009521 4.3e-08 61.2 87 41.4
BcaC06g32006 Brassica carinata HOM05D007555 ORTHO05D009521 7.3e-08 60.5 81 39.5
Os03g0363400 Oryza sativa ssp. japonica HOM05D007555 ORTHO05D009521 7.3e-08 60.5 39 59.0
SEGI_01945 Sequoiadendron giganteum HOM05D007555 ORTHO05D009521 1.2e-07 59.7 59 44.1
Zm00001eb017700 Zea mays HOM05D007555 ORTHO05D009521 2.8e-07 58.5 60 45.0
BcaC09g50387 Brassica carinata HOM05D007555 ORTHO05D009521 6.9e-06 53.9 71 40.8


User provided reference genes

Program Settings