Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 1.2e-84 316.6 183 100.0
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 1.4e-64 250.0 178 75.3
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 1.6e-63 246.5 160 81.9
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 2.3e-62 242.7 158 79.1
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 3.6e-60 235.3 148 81.1
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 8.1e-60 234.2 158 76.6
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 8.1e-60 234.2 151 78.1
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 1.1e-59 233.8 159 76.1
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 2.3e-59 232.6 159 74.8
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 3.1e-59 232.3 159 74.8
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 3.1e-59 232.3 160 74.4
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 6.8e-59 231.1 157 76.4
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 8.9e-59 230.7 164 76.2
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 1.2e-58 230.3 157 76.4
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 2.6e-58 229.2 150 77.3
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 3.4e-58 228.8 160 75.6
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 7.5e-58 227.6 158 73.4
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.3e-57 226.9 158 75.3
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 1.3e-57 226.9 160 71.9
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 1.3e-57 226.9 160 71.9
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 1.7e-57 226.5 160 71.9
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 1.7e-57 226.5 158 75.3
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 2.2e-57 226.1 157 73.9
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 2.2e-57 226.1 157 77.1
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 2.2e-57 226.1 165 73.9
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 2.2e-57 226.1 165 73.9
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 2.2e-57 226.1 160 74.4
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 2.2e-57 226.1 165 73.9
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 2.2e-57 226.1 158 75.3
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 2.9e-57 225.7 158 75.9
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 3.7e-57 225.3 157 72.6
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 4.9e-57 224.9 158 74.1
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 6.4e-57 224.6 158 75.3
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 1.1e-56 223.8 160 71.2
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 1.4e-56 223.4 157 72.6
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 1.4e-56 223.4 160 73.8
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 1.4e-56 223.4 160 73.8
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 1.4e-56 223.4 153 74.5
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 1.4e-56 223.4 157 73.9
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 1.9e-56 223.0 165 72.7
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 2.4e-56 222.6 159 71.1
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 3.2e-56 222.2 160 72.5
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 3.2e-56 222.2 159 71.7
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 5.4e-56 221.5 159 71.7
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 9.2e-56 220.7 157 70.1
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 9.2e-56 220.7 160 71.9
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 1.2e-55 220.3 160 74.4
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 1.6e-55 219.9 160 71.9
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 2.1e-55 219.5 159 69.8
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 2.7e-55 219.2 158 71.5
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 6.0e-55 218.0 153 73.2
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 6.0e-55 218.0 157 71.3
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 7.8e-55 217.6 153 71.2
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 1.7e-54 216.5 159 69.2
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 1.7e-54 216.5 157 70.7
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 3.9e-54 215.3 140 78.6
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 3.9e-54 215.3 153 69.9
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 6.6e-54 214.5 159 70.4
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 8.6e-54 214.2 153 68.6
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 3.3e-53 212.2 159 69.2
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 9.5e-53 210.7 157 69.4
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 9.5e-53 210.7 194 62.9
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 1.6e-52 209.9 151 76.8
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 1.6e-52 209.9 155 71.6
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 2.8e-52 209.1 158 69.6
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 3.6e-52 208.8 152 71.7
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 1.1e-51 207.2 157 70.7
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 1.1e-51 207.2 160 73.1
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 3.1e-51 205.7 157 70.1
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 4.0e-51 205.3 157 70.1
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 8.9e-51 204.1 157 68.2
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 2.0e-50 203.0 148 68.9
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 2.0e-50 203.0 157 68.8
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 2.6e-50 202.6 142 73.9
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 5.8e-50 201.4 191 62.3
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 1.3e-49 200.3 157 68.8
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 1.3e-49 200.3 157 67.5
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 2.9e-49 199.1 148 73.0
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 8.4e-49 197.6 157 68.2
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 1.4e-48 196.8 136 74.3
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 1.9e-48 196.4 159 66.0
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 1.9e-48 196.4 148 69.6
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 7.1e-48 194.5 120 82.5
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 9.2e-48 194.1 139 73.4
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 1.6e-47 193.4 135 74.8
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 1.6e-47 193.4 153 67.3
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 2.1e-47 193.0 157 68.2
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 2.7e-47 192.6 117 82.9
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 6.0e-47 191.4 139 72.7
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 6.0e-47 191.4 158 68.4
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 6.0e-47 191.4 139 72.7
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 7.8e-47 191.0 135 74.1
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 7.8e-47 191.0 138 73.2
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 1.0e-46 190.7 143 72.0
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 1.0e-46 190.7 135 74.1
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 1.0e-46 190.7 185 56.8
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 1.7e-46 189.9 122 77.9
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 3.0e-46 189.1 158 67.1
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 3.0e-46 189.1 158 67.1
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 6.6e-46 188.0 158 67.1
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 6.6e-46 188.0 137 73.7
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 6.6e-46 188.0 134 70.9
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 4.7e-44 181.8 157 63.1
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 6.2e-44 181.4 132 74.2
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 4.0e-43 178.7 105 88.6
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 4.4e-42 175.3 140 63.6
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 5.8e-42 174.9 125 74.4
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 3.8e-41 172.2 125 73.6
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 4.9e-41 171.8 147 59.9
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 1.6e-39 166.8 102 82.4
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 3.3e-37 159.1 142 64.8
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 1.6e-36 156.8 98 77.6
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 2.1e-36 156.4 110 71.8
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 4.8e-36 155.2 126 66.7
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 5.3e-35 151.8 118 63.6
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 9.0e-35 151.0 98 78.6
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 1.3e-33 147.1 100 76.0
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 3.8e-33 145.6 117 61.5
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 6.4e-33 144.8 98 77.6
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 1.9e-32 143.3 113 66.4
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 9.3e-32 141.0 123 59.3
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 2.3e-30 136.3 146 46.6
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 3.7e-28 129.0 84 79.8
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 4.9e-25 118.6 96 69.8
Atru.chr1.2818 Acer truncatum HOM05D005569 ORTHO05D007052 8.4e-25 117.9 76 80.3
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 4.8e-20 102.1 135 51.1
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 7.6e-18 94.7 96 54.2
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 2.2e-17 93.2 130 40.8
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 4.9e-17 92.0 155 37.4
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 8.4e-17 91.3 124 42.7
unitig_899.g14763 Utricularia gibba HOM05D000070 ORTHO05D003301 4.3e-13 79.0 55 65.5
Duzib235G0081 Durio zibethinus HOM05D005569 ORTHO05D007052 7.4e-13 78.2 139 42.4
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 4.1e-11 72.4 47 74.5
HPP92_023858 Vanilla planifolia HOM05D005569 ORTHO05D007052 4.5e-10 68.9 46 69.6
C08p44240 Brassica napus HOM05D005569 ORTHO05D007052 2.2e-09 66.6 52 71.2
BolC8t51970H Brassica oleracea HOM05D005569 ORTHO05D007052 2.2e-09 66.6 52 71.2
Prupe.5G038700 Prunus persica HOM05D005569 ORTHO05D007052 1.4e-06 57.4 47 63.8
C08p44260 Brassica napus HOM05D005569 ORTHO05D007052 8.8e-06 54.7 47 68.1


User provided reference genes

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