Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046775 Camellia sinensis var. sinensis HOM05D003563 ORTHO05D005325 7.3e-46 186.8 90 100.0
Dinv36074 Davidia involucrata HOM05D003563 ORTHO05D005325 4.4e-19 97.8 70 67.1
Dinv39412 Davidia involucrata HOM05D003563 ORTHO05D005325 5.8e-19 97.4 72 66.7
CSS0002435 Camellia sinensis var. sinensis HOM05D003563 ORTHO05D005325 1.7e-18 95.9 53 86.8
vmacro21635 Vaccinium macrocarpon HOM05D003563 ORTHO05D005325 2.9e-18 95.1 53 86.8
GSVIVG01009697001 Vitis vinifera HOM05D003563 ORTHO05D005325 2.9e-18 95.1 69 66.7
Nn5g29576 Nelumbo nucifera HOM05D003563 ORTHO05D005325 1.1e-17 93.2 69 65.2
Gohir.D01G104300 Gossypium hirsutum HOM05D003563 ORTHO05D005325 9.2e-17 90.1 70 61.4
Rhsim06G0034400 Rhododendron simsii HOM05D003563 ORTHO05D005325 9.2e-17 90.1 78 62.8
Lj4A41G56 Lonicera japonica HOM05D003563 ORTHO05D005325 2.7e-16 88.6 75 56.0
Gohir.A01G116000 Gossypium hirsutum HOM05D003563 ORTHO05D005325 4.6e-16 87.8 65 64.6
Gorai.002G128400 Gossypium raimondii HOM05D003563 ORTHO05D005325 4.6e-16 87.8 53 75.5
TAR381G1659 Trochodendron aralioides HOM05D003563 ORTHO05D005325 6.0e-16 87.4 72 58.3
COL.COLO4_26329 Corchorus olitorius HOM05D003563 ORTHO05D005325 1.0e-15 86.7 69 62.3
Nn1g05025 Nelumbo nucifera HOM05D003563 ORTHO05D005325 1.0e-15 86.7 53 73.6
DCAR_020972 Daucus carota HOM05D003563 ORTHO05D005325 2.3e-15 85.5 69 59.4
Sc02g0006230 Simmondsia chinensis HOM05D003563 ORTHO05D005325 2.3e-15 85.5 69 63.8
Duzib093G1625 Durio zibethinus HOM05D003563 ORTHO05D005325 5.1e-15 84.3 65 63.1
Ciclev10000722m.g Citrus clementina HOM05D003563 ORTHO05D005325 6.6e-15 84.0 69 59.4
MSTRG.25165 Avicennia marina HOM05D003563 ORTHO05D005325 8.7e-15 83.6 53 75.5
Migut.C00716 Erythranthe guttata HOM05D003563 ORTHO05D005325 8.7e-15 83.6 63 68.3
SalBow7G2312 Salvia bowleyana HOM05D003563 ORTHO05D005325 8.7e-15 83.6 53 73.6
Haze_07269 Corylus avellana HOM05D003563 ORTHO05D005325 1.1e-14 83.2 53 75.5
Lsat_1_v5_gn_4_119160 Lactuca sativa HOM05D003563 ORTHO05D005325 1.1e-14 83.2 53 73.6
PSO541G4717 Papaver somniferum HOM05D003563 ORTHO05D005325 1.5e-14 82.8 69 58.0
TWI56G0595 Tripterygium wilfordii HOM05D003563 ORTHO05D005325 1.5e-14 82.8 50 78.0
Atru.chr13.492 Acer truncatum HOM05D003563 ORTHO05D005325 1.9e-14 82.4 53 73.6
CANSAT21G1125 Cannabis sativa HOM05D003563 ORTHO05D005325 1.9e-14 82.4 55 70.9
Lj7C352G3 Lonicera japonica HOM05D003563 ORTHO05D005325 1.9e-14 82.4 65 61.5
Thecc.08G025500 Theobroma cacao HOM05D003563 ORTHO05D005325 1.9e-14 82.4 65 64.6
Cfa018145 Carpinus fangiana HOM05D003563 ORTHO05D005325 3.3e-14 81.6 53 73.6
MBI16_g36556_MAGBIO Magnolia biondii HOM05D003563 ORTHO05D005325 3.3e-14 81.6 49 79.6
Sabra08G0090300 Salix brachista HOM05D003563 ORTHO05D005325 3.3e-14 81.6 69 59.4
Manes.05G160800 Manihot esculenta HOM05D003563 ORTHO05D005325 4.3e-14 81.3 53 69.8
PSO675G8753 Papaver somniferum HOM05D003563 ORTHO05D005325 4.3e-14 81.3 69 56.5
AT5G42740 Arabidopsis thaliana HOM05D003563 ORTHO05D005325 5.6e-14 80.9 50 76.0
EL10Ac5g11903 Beta vulgaris HOM05D003563 ORTHO05D005325 5.6e-14 80.9 50 74.0
CARHR181650 Cardamine hirsuta HOM05D003563 ORTHO05D005325 5.6e-14 80.9 50 76.0
CiPaw.15G077500 Carya illinoinensis HOM05D003563 ORTHO05D005325 5.6e-14 80.9 50 76.0
Hund14325 Selenicereus undatus HOM05D003563 ORTHO05D005325 7.3e-14 80.5 50 76.0
Manes.18G027800 Manihot esculenta HOM05D003563 ORTHO05D005325 9.6e-14 80.1 53 69.8
QL02p008438 Quercus lobata HOM05D003563 ORTHO05D005325 9.6e-14 80.1 50 76.0
Ah.02g117430 Amaranthus hybridus HOM05D003563 ORTHO05D005325 1.2e-13 79.7 50 74.0
ATR0057G040 Amborella trichopoda HOM05D003563 ORTHO05D005325 1.2e-13 79.7 50 74.0
Peaxi162Scf00333g00512 Petunia axillaris HOM05D003563 ORTHO05D005325 1.2e-13 79.7 69 56.5
Aqoxy508s001 Aquilegia oxysepala HOM05D003563 ORTHO05D005325 1.6e-13 79.3 53 67.9
Aqoxy6G01090 Aquilegia oxysepala HOM05D003563 ORTHO05D005325 1.6e-13 79.3 53 67.9
CAN.G233.10 Capsicum annuum HOM05D003563 ORTHO05D005325 2.1e-13 79.0 53 69.8
Nitab4.5_0000194g0210 Nicotiana tabacum HOM05D003563 ORTHO05D005325 2.1e-13 79.0 69 56.5
Cc10_g02960 Coffea canephora HOM05D003563 ORTHO05D005325 2.8e-13 78.6 50 76.0
Potri.008G118900 Populus trichocarpa HOM05D003563 ORTHO05D005325 3.6e-13 78.2 69 56.5
PGR083G2760 Punica granatum HOM05D003563 ORTHO05D005325 3.6e-13 78.2 50 76.0
BcaC04g21978 Brassica carinata HOM05D003563 ORTHO05D005325 6.2e-13 77.4 50 72.0
A09p19900 Brassica napus HOM05D003563 ORTHO05D005325 6.2e-13 77.4 50 72.0
C09p25230 Brassica napus HOM05D003563 ORTHO05D005325 6.2e-13 77.4 50 72.0
BolC9t55419H Brassica oleracea HOM05D003563 ORTHO05D005325 6.2e-13 77.4 50 72.0
BraA09t37600Z Brassica rapa HOM05D003563 ORTHO05D005325 6.2e-13 77.4 50 72.0
Carub.0008s0621 Capsella rubella HOM05D003563 ORTHO05D005325 6.2e-13 77.4 50 74.0
Nitab4.5_0009269g0010 Nicotiana tabacum HOM05D003563 ORTHO05D005325 6.2e-13 77.4 69 55.1
CANSAT25G0144 Cannabis sativa HOM05D003563 ORTHO05D005325 8.1e-13 77.0 60 65.0
AUR62007425 Chenopodium quinoa HOM05D003563 ORTHO05D005325 8.1e-13 77.0 50 72.0
AUR62027308 Chenopodium quinoa HOM05D003563 ORTHO05D005325 8.1e-13 77.0 50 72.0
ClCG08G015170 Citrullus lanatus HOM05D003563 ORTHO05D005325 8.1e-13 77.0 57 64.9
Eucgr.F01561 Eucalyptus grandis HOM05D003563 ORTHO05D005325 8.1e-13 77.0 50 72.0
Aa31LG9G12790 Aethionema arabicum HOM05D003563 ORTHO05D005325 1.1e-12 76.6 50 72.0
Cpa.g.sc36.68 Carica papaya HOM05D003563 ORTHO05D005325 1.1e-12 76.6 50 72.0
Phvul.004G023500 Phaseolus vulgaris HOM05D003563 ORTHO05D005325 1.1e-12 76.6 69 53.6
MD08G1034600 Malus domestica HOM05D003563 ORTHO05D005325 1.4e-12 76.3 53 64.2
unitig_37.g12990 Utricularia gibba HOM05D003563 ORTHO05D005325 1.4e-12 76.3 53 67.9
BcaB07g31058 Brassica carinata HOM05D003563 ORTHO05D005325 1.8e-12 75.9 50 70.0
FAN15G3737 Fragaria x ananassa HOM05D003563 ORTHO05D005325 1.8e-12 75.9 50 72.0
FAN27G1814 Fragaria x ananassa HOM05D003563 ORTHO05D005325 1.8e-12 75.9 50 72.0
Sp2g07360 Schrenkiella parvula HOM05D003563 ORTHO05D005325 1.8e-12 75.9 50 70.0
Ca_04241_v3 Cicer arietinum L. HOM05D003563 ORTHO05D005325 2.4e-12 75.5 53 69.8
FAN20G1254 Fragaria x ananassa HOM05D003563 ORTHO05D005325 2.4e-12 75.5 50 72.0
Medtr6g009330 Medicago truncatula HOM05D003563 ORTHO05D005325 2.4e-12 75.5 50 74.0
TPR.G32590 Trifolium pratense HOM05D003563 ORTHO05D005325 2.4e-12 75.5 53 67.9
MSTRG.1282 Avicennia marina HOM05D003563 ORTHO05D005325 3.1e-12 75.1 69 55.1
MD15G1031400 Malus domestica HOM05D003563 ORTHO05D005325 3.1e-12 75.1 53 64.2
RcHm_v2.0_Chr6g0300881 Rosa chinensis HOM05D003563 ORTHO05D005325 3.1e-12 75.1 50 70.0
Glyma.19G017200 Glycine max HOM05D003563 ORTHO05D005325 4.0e-12 74.7 69 53.6
VMungo0464G1044 Vigna mungo HOM05D003563 ORTHO05D005325 4.0e-12 74.7 69 53.6
CDE11G0237 Ceratophyllum demersum HOM05D003563 ORTHO05D005325 5.3e-12 74.3 50 70.0
CsaV3_2G028640 Cucumis sativus L. HOM05D003563 ORTHO05D005325 5.3e-12 74.3 53 66.0
Thhalv10003173m.g Eutrema salsugineum HOM05D003563 ORTHO05D005325 5.3e-12 74.3 50 66.0
FvH4_2g39910 Fragaria vesca HOM05D003563 ORTHO05D005325 5.3e-12 74.3 50 70.0
Sed0018414 Sechium edule HOM05D003563 ORTHO05D005325 5.3e-12 74.3 53 66.0
VMungo1309G1719 Vigna mungo HOM05D003563 ORTHO05D005325 5.3e-12 74.3 53 66.0
HPP92_002698 Vanilla planifolia HOM05D003563 ORTHO05D005325 6.9e-12 73.9 50 70.0
Solyc12g014380.3 Solanum lycopersicum HOM05D003563 ORTHO05D005325 9.0e-12 73.6 53 62.3
Sopen12g006150 Solanum pennellii HOM05D003563 ORTHO05D005325 9.0e-12 73.6 53 62.3
SGA_v2.0_scaffold54G19524 Striga asiatica HOM05D003563 ORTHO05D005325 1.2e-11 73.2 63 58.7
CDE05G1619 Ceratophyllum demersum HOM05D003563 ORTHO05D005325 2.0e-11 72.4 50 68.0
Sed0015721 Sechium edule HOM05D003563 ORTHO05D005325 2.0e-11 72.4 50 68.0
ECA232G1124 Erigeron canadensis HOM05D003563 ORTHO05D005325 2.6e-11 72.0 65 58.5
Glyma.04G032600 Glycine max HOM05D003563 ORTHO05D005325 2.6e-11 72.0 53 64.2
Glyma.06G032451 Glycine max HOM05D003563 ORTHO05D005325 2.6e-11 72.0 53 62.3
Os03g0776000 Oryza sativa ssp. japonica HOM05D003563 ORTHO05D005325 2.6e-11 72.0 57 63.2
Os06g0256500 Oryza sativa ssp. japonica HOM05D003563 ORTHO05D005325 2.6e-11 72.0 57 63.2
Psat1g077120 Pisum sativum HOM05D003563 ORTHO05D005325 2.6e-11 72.0 50 68.0
arahy.Tifrunner.gnm1.ann1.7JQX15 Arachis hypogaea HOM05D003563 ORTHO05D005325 4.4e-11 71.2 53 67.9
arahy.Tifrunner.gnm1.ann1.UW0ZL7 Arachis hypogaea HOM05D003563 ORTHO05D005325 4.4e-11 71.2 53 67.9
Oeu049958.2 Olea europaea HOM05D003563 ORTHO05D005325 4.4e-11 71.2 53 62.3
Phvul.009G057500 Phaseolus vulgaris HOM05D003563 ORTHO05D005325 4.4e-11 71.2 53 62.3
MELO3C010936.2 Cucumis melo HOM05D003563 ORTHO05D005325 5.8e-11 70.9 53 62.3
Lalb_Chr23g0266621 Lupinus albus HOM05D003563 ORTHO05D005325 9.9e-11 70.1 53 60.4
THA.LOC104798643 Tarenaya hassleriana HOM05D003563 ORTHO05D005325 1.3e-10 69.7 54 59.3
Pp3c25_1860 Physcomitrium patens HOM05D003563 ORTHO05D005325 2.2e-10 68.9 50 64.0
Zm00001eb059230 Zea mays HOM05D003563 ORTHO05D005325 2.2e-10 68.9 53 62.3
Prupe.1G380500 Prunus persica HOM05D003563 ORTHO05D005325 3.8e-10 68.2 53 64.2
Lj1g0022254 Lotus japonicus HOM05D003563 ORTHO05D005325 6.4e-10 67.4 50 64.0
SEGI_25229 Sequoiadendron giganteum HOM05D003563 ORTHO05D005325 1.1e-09 66.6 49 63.3
SMO119G0154 Selaginella moellendorffii HOM05D003563 ORTHO05D005325 4.2e-09 64.7 61 50.8
Pp3c16_6380 Physcomitrium patens HOM05D003563 ORTHO05D005325 5.4e-09 64.3 60 53.3
AagrBONN_evm.TU.Sc2ySwM_344.3288 Anthoceros agrestis HOM05D003563 ORTHO05D005325 1.2e-08 63.2 50 56.0
Pp3c5_3820 Physcomitrium patens HOM05D003563 ORTHO05D005325 3.5e-08 61.6 57 50.9
SMO340G0102 Selaginella moellendorffii HOM05D003563 ORTHO05D005325 3.5e-08 61.6 54 53.7
AagrBONN_evm.TU.Sc2ySwM_368.1410 Anthoceros agrestis HOM05D003563 ORTHO05D005325 7.8e-08 60.5 50 56.0
HanXRQChr09g0268611 Helianthus annuus HOM05D003563 ORTHO05D005325 1.7e-07 59.3 38 68.4
MCO02G104 Micromonas commoda HOM05D003563 ORTHO05D005325 4.3e-06 54.7 49 46.9
AagrBONN_evm.TU.Sc2ySwM_228.405 Anthoceros agrestis HOM05D003563 ORTHO05D005325 7.3e-06 53.9 50 46.0


User provided reference genes

Program Settings