Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046772 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 5.4e-181 637.5 315 100.0
Dinv16851 Davidia involucrata HOM05D003935 ORTHO05D005096 1.1e-173 613.2 315 96.2
CSS0045715 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 1.4e-173 612.8 315 97.1
vmacro09915 Vaccinium macrocarpon HOM05D003935 ORTHO05D005096 6.0e-172 607.4 315 95.9
Hma1.2p1_0432F.1_g151940 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 5.1e-171 604.4 313 94.9
Hma1.2p1_1132F.1_g260170 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 8.7e-171 603.6 313 95.2
TAR374G1483 Trochodendron aralioides HOM05D003935 ORTHO05D005096 1.9e-170 602.4 315 93.7
Actinidia01047 Actinidia chinensis HOM05D003935 ORTHO05D005096 4.3e-170 601.3 315 94.3
TWI14G1423 Tripterygium wilfordii HOM05D003935 ORTHO05D005096 4.3e-170 601.3 315 93.0
Rhsim09G0190400 Rhododendron simsii HOM05D003935 ORTHO05D005096 7.4e-170 600.5 330 91.8
Eucgr.K00175 Eucalyptus grandis HOM05D003935 ORTHO05D005096 2.8e-169 598.6 313 93.6
Manes.06G132800 Manihot esculenta HOM05D003935 ORTHO05D005096 4.8e-169 597.8 315 93.0
Nn6g33882 Nelumbo nucifera HOM05D003935 ORTHO05D005096 8.1e-169 597.0 315 92.7
Migut.F00500 Erythranthe guttata HOM05D003935 ORTHO05D005096 2.4e-168 595.5 315 93.0
Potri.001G126500 Populus trichocarpa HOM05D003935 ORTHO05D005096 9.0e-168 593.6 316 92.7
MSTRG.27208 Avicennia marina HOM05D003935 ORTHO05D005096 2.6e-167 592.0 315 92.1
Aqoxy7G00829 Aquilegia oxysepala HOM05D003935 ORTHO05D005096 4.5e-167 591.3 313 91.7
PGR142G1672 Punica granatum HOM05D003935 ORTHO05D005096 7.6e-167 590.5 313 92.3
SGA_v2.0_scaffold44G16558 Striga asiatica HOM05D003935 ORTHO05D005096 7.6e-167 590.5 313 91.4
Lj1C977G12 Lonicera japonica HOM05D003935 ORTHO05D005096 1.7e-166 589.3 338 87.6
Oeu031400.2 Olea europaea HOM05D003935 ORTHO05D005096 4.9e-166 587.8 316 91.1
Sopen06g010820 Solanum pennellii HOM05D003935 ORTHO05D005096 4.2e-165 584.7 315 92.1
Cfa012922 Carpinus fangiana HOM05D003935 ORTHO05D005096 5.5e-165 584.3 315 90.2
Lalb_Chr19g0126281 Lupinus albus HOM05D003935 ORTHO05D005096 7.1e-165 583.9 315 89.5
Solyc06g034160.3 Solanum lycopersicum HOM05D003935 ORTHO05D005096 9.3e-165 583.6 315 91.7
GSVIVG01018224001 Vitis vinifera HOM05D003935 ORTHO05D005096 1.6e-164 582.8 315 91.1
COL.COLO4_12445 Corchorus olitorius HOM05D003935 ORTHO05D005096 3.5e-164 581.6 315 90.8
Actinidia13591 Actinidia chinensis HOM05D003935 ORTHO05D005096 4.6e-164 581.3 309 93.2
CAN.G330.5 Capsicum annuum HOM05D003935 ORTHO05D005096 6.0e-164 580.9 315 91.4
Atru.chr1.845 Acer truncatum HOM05D003935 ORTHO05D005096 7.9e-164 580.5 313 89.8
Duzib133G0969 Durio zibethinus HOM05D003935 ORTHO05D005096 1.3e-163 579.7 316 90.8
Nitab4.5_0000448g0060 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.8e-163 579.3 315 91.4
SalBow1G3743 Salvia bowleyana HOM05D003935 ORTHO05D005096 3.0e-163 578.6 315 89.8
DCAR_020181 Daucus carota HOM05D003935 ORTHO05D005096 3.9e-163 578.2 315 89.5
Thecc.01G388100 Theobroma cacao HOM05D003935 ORTHO05D005096 3.9e-163 578.2 315 90.5
CANSAT21G2109 Cannabis sativa HOM05D003935 ORTHO05D005096 8.7e-163 577.0 315 89.2
Cpa.g.sc16.168 Carica papaya HOM05D003935 ORTHO05D005096 1.9e-162 575.9 315 89.5
PGSC0003DMG400021594 Solanum tuberosum HOM05D003935 ORTHO05D005096 1.9e-162 575.9 315 90.5
Glyma.09G231000 Glycine max HOM05D003935 ORTHO05D005096 2.5e-162 575.5 313 89.1
QL02p025668 Quercus lobata HOM05D003935 ORTHO05D005096 3.3e-162 575.1 313 90.4
Potri.003G107000 Populus trichocarpa HOM05D003935 ORTHO05D005096 4.3e-162 574.7 317 90.5
AL8G38190 Arabidopsis lyrata HOM05D003935 ORTHO05D005096 5.7e-162 574.3 315 88.3
Duzib138G0818 Durio zibethinus HOM05D003935 ORTHO05D005096 9.6e-162 573.5 316 90.8
Peaxi162Scf00304g01342 Petunia axillaris HOM05D003935 ORTHO05D005096 1.3e-161 573.2 315 89.5
Thhalv10004633m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 1.6e-161 572.8 316 89.2
Gohir.D08G159150 Gossypium hirsutum HOM05D003935 ORTHO05D005096 1.6e-161 572.8 316 90.5
Lalb_Chr01g0000281 Lupinus albus HOM05D003935 ORTHO05D005096 1.6e-161 572.8 315 88.9
MSTRG.8834 Avicennia marina HOM05D003935 ORTHO05D005096 2.1e-161 572.4 315 88.6
Gorai.004G165200 Gossypium raimondii HOM05D003935 ORTHO05D005096 2.8e-161 572.0 316 90.5
PSO782G0781 Papaver somniferum HOM05D003935 ORTHO05D005096 2.8e-161 572.0 315 90.5
QL04p034713 Quercus lobata HOM05D003935 ORTHO05D005096 3.7e-161 571.6 314 91.7
Sabra01G0097600 Salix brachista HOM05D003935 ORTHO05D005096 3.7e-161 571.6 316 88.3
AT5G61500 Arabidopsis thaliana HOM05D003935 ORTHO05D005096 8.2e-161 570.5 315 87.9
CARHR275270 Cardamine hirsuta HOM05D003935 ORTHO05D005096 8.2e-161 570.5 315 87.9
Carub.0008s2219 Capsella rubella HOM05D003935 ORTHO05D005096 1.1e-160 570.1 315 87.9
PSO063G2499 Papaver somniferum HOM05D003935 ORTHO05D005096 1.1e-160 570.1 315 90.2
Gohir.A08G137866 Gossypium hirsutum HOM05D003935 ORTHO05D005096 1.4e-160 569.7 316 89.9
Glyma.12G005700 Glycine max HOM05D003935 ORTHO05D005096 1.8e-160 569.3 315 88.6
AUR62002246 Chenopodium quinoa HOM05D003935 ORTHO05D005096 2.4e-160 568.9 313 88.5
Sp2g24700 Schrenkiella parvula HOM05D003935 ORTHO05D005096 3.1e-160 568.5 315 87.9
TPR.G3680 Trifolium pratense HOM05D003935 ORTHO05D005096 1.2e-159 566.6 315 87.9
Medtr4g036265 Medicago truncatula HOM05D003935 ORTHO05D005096 1.5e-159 566.2 315 87.6
Psat7g207040 Pisum sativum HOM05D003935 ORTHO05D005096 2.6e-159 565.5 315 87.6
arahy.Tifrunner.gnm1.ann1.YZL4IN Arachis hypogaea HOM05D003935 ORTHO05D005096 3.4e-159 565.1 313 89.1
Lj3g0013928 Lotus japonicus HOM05D003935 ORTHO05D005096 3.4e-159 565.1 315 86.7
HanXRQChr15g0485951 Helianthus annuus HOM05D003935 ORTHO05D005096 5.9e-159 564.3 315 86.3
Nitab4.5_0000262g0090 Nicotiana tabacum HOM05D003935 ORTHO05D005096 5.9e-159 564.3 315 89.8
Rhsim03G0165100 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.0e-158 563.5 337 83.7
THA.LOC104801570 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 1.3e-158 563.1 315 87.9
THA.LOC104819415 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 1.3e-158 563.1 315 88.3
CiPaw.14G023500 Carya illinoinensis HOM05D003935 ORTHO05D005096 1.7e-158 562.8 315 87.6
CsaV3_6G008640 Cucumis sativus L. HOM05D003935 ORTHO05D005096 2.2e-158 562.4 314 86.9
Lsat_1_v5_gn_5_9340 Lactuca sativa HOM05D003935 ORTHO05D005096 3.8e-158 561.6 315 86.0
Gohir.D07G154200 Gossypium hirsutum HOM05D003935 ORTHO05D005096 6.5e-158 560.8 316 88.6
Gorai.001G176400 Gossypium raimondii HOM05D003935 ORTHO05D005096 6.5e-158 560.8 316 88.6
Haze_21276 Corylus avellana HOM05D003935 ORTHO05D005096 8.5e-158 560.5 322 86.3
Sed0016106 Sechium edule HOM05D003935 ORTHO05D005096 1.9e-157 559.3 314 86.6
Phvul.011G006500 Phaseolus vulgaris HOM05D003935 ORTHO05D005096 3.2e-157 558.5 315 87.3
BcaC06g33155 Brassica carinata HOM05D003935 ORTHO05D005096 5.5e-157 557.8 315 86.3
ClCG06G002480 Citrullus lanatus HOM05D003935 ORTHO05D005096 5.5e-157 557.8 314 86.0
MELO3C022280.2 Cucumis melo HOM05D003935 ORTHO05D005096 7.2e-157 557.4 314 85.7
Thhalv10014155m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 7.2e-157 557.4 315 86.3
Gohir.A07G148000 Gossypium hirsutum HOM05D003935 ORTHO05D005096 9.3e-157 557.0 316 87.7
HanXRQChr16g0512861 Helianthus annuus HOM05D003935 ORTHO05D005096 1.2e-156 556.6 315 85.7
VMungo1127G0071 Vigna mungo HOM05D003935 ORTHO05D005096 1.2e-156 556.6 315 86.3
Sp6g35250 Schrenkiella parvula HOM05D003935 ORTHO05D005096 2.1e-156 555.8 315 86.0
unitig_37.g12492 Utricularia gibba HOM05D003935 ORTHO05D005096 1.3e-155 553.1 315 87.6
Cc02_g04470 Coffea canephora HOM05D003935 ORTHO05D005096 2.3e-155 552.4 319 84.3
Prupe.2G123000 Prunus persica HOM05D003935 ORTHO05D005096 3.9e-155 551.6 315 87.0
Aa31LG11G1910 Aethionema arabicum HOM05D003935 ORTHO05D005096 1.1e-154 550.1 312 86.2
Sabra03G0073800 Salix brachista HOM05D003935 ORTHO05D005096 7.4e-154 547.4 383 75.2
arahy.Tifrunner.gnm1.ann1.2B4GQV Arachis hypogaea HOM05D003935 ORTHO05D005096 1.3e-153 546.6 309 87.1
FAN01G1603 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.2e-153 545.8 317 86.4
FvH4_7g09530 Fragaria vesca HOM05D003935 ORTHO05D005096 2.8e-153 545.4 317 86.1
FAN03G1633 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.8e-153 545.4 317 86.4
FAN06G5089 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.8e-153 545.4 317 86.1
FAN06G4162 Fragaria x ananassa HOM05D003935 ORTHO05D005096 4.8e-153 544.7 317 86.1
FAN10G2569 Fragaria x ananassa HOM05D003935 ORTHO05D005096 8.2e-153 543.9 317 85.8
FAN10G4028 Fragaria x ananassa HOM05D003935 ORTHO05D005096 8.2e-153 543.9 317 85.8
arahy.Tifrunner.gnm1.ann1.16SP4W Arachis hypogaea HOM05D003935 ORTHO05D005096 1.1e-152 543.5 313 85.9
CDE04G2838 Ceratophyllum demersum HOM05D003935 ORTHO05D005096 3.1e-152 542.0 306 86.9
BolC7t45044H Brassica oleracea HOM05D003935 ORTHO05D005096 1.5e-151 539.7 316 84.2
MD02G1218100 Malus domestica HOM05D003935 ORTHO05D005096 2.6e-151 538.9 315 85.7
RcHm_v2.0_Chr1g0346321 Rosa chinensis HOM05D003935 ORTHO05D005096 7.7e-151 537.3 317 86.4
C07p45210 Brassica napus HOM05D003935 ORTHO05D005096 1.0e-150 537.0 316 83.9
Ciclev10005442m.g Citrus clementina HOM05D003935 ORTHO05D005096 1.1e-149 533.5 322 83.2
arahy.Tifrunner.gnm1.ann1.9TCX0P Arachis hypogaea HOM05D003935 ORTHO05D005096 2.5e-149 532.3 309 86.1
Hund04562 Selenicereus undatus HOM05D003935 ORTHO05D005096 2.1e-148 529.3 310 83.2
BcaB05g21604 Brassica carinata HOM05D003935 ORTHO05D005096 3.6e-148 528.5 317 83.0
BolC2t06285H Brassica oleracea HOM05D003935 ORTHO05D005096 1.1e-146 523.5 318 83.0
EL10Ac3g05885 Beta vulgaris HOM05D003935 ORTHO05D005096 3.3e-146 521.9 285 88.8
Nitab4.5_0001267g0110 Nicotiana tabacum HOM05D003935 ORTHO05D005096 6.3e-145 517.7 282 89.7
ECA232G4201 Erigeron canadensis HOM05D003935 ORTHO05D005096 1.1e-144 516.9 294 84.0
Sc10g0008570 Simmondsia chinensis HOM05D003935 ORTHO05D005096 1.8e-144 516.2 283 88.7
Ah.07g207480 Amaranthus hybridus HOM05D003935 ORTHO05D005096 4.1e-144 515.0 288 87.5
BcaC03g13194 Brassica carinata HOM05D003935 ORTHO05D005096 1.0e-142 510.4 318 81.4
CiPaw.07G237000 Carya illinoinensis HOM05D003935 ORTHO05D005096 1.3e-142 510.0 325 79.7
BraA02t04926Z Brassica rapa HOM05D003935 ORTHO05D005096 7.2e-141 504.2 315 81.0
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 4.7e-140 501.5 314 80.6
Aa31LG3G18800 Aethionema arabicum HOM05D003935 ORTHO05D005096 1.0e-139 500.4 313 81.5
Ca_12623_v3 Cicer arietinum L. HOM05D003935 ORTHO05D005096 3.0e-139 498.8 315 79.4
Haze_02753 Corylus avellana HOM05D003935 ORTHO05D005096 3.0e-139 498.8 462 60.4
Mapoly0003s0208 Marchantia polymorpha HOM05D003935 ORTHO05D005096 3.0e-139 498.8 317 77.3
BraA03t13837Z Brassica rapa HOM05D003935 ORTHO05D005096 4.8e-137 491.5 315 79.0
A03p47100 Brassica napus HOM05D003935 ORTHO05D005096 1.4e-136 490.0 315 78.7
Lsat_1_v5_gn_9_51820 Lactuca sativa HOM05D003935 ORTHO05D005096 1.7e-134 483.0 313 77.3
Pp3c8_11900 Physcomitrium patens HOM05D003935 ORTHO05D005096 1.7e-134 483.0 310 77.1
Actinidia24986 Actinidia chinensis HOM05D003935 ORTHO05D005096 6.7e-131 471.1 240 95.8
Os01g0200000 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 4.2e-125 451.8 316 71.8
SMO134G0003 Selaginella moellendorffii HOM05D003935 ORTHO05D005096 4.0e-123 445.3 312 68.9
ATR0057G070 Amborella trichopoda HOM05D003935 ORTHO05D005096 6.8e-123 444.5 284 76.8
BcaC06g33158 Brassica carinata HOM05D003935 ORTHO05D005096 1.3e-121 440.3 262 84.0
Zm00001eb391210 Zea mays HOM05D003935 ORTHO05D005096 5.9e-119 431.4 314 69.7
AUR62015457 Chenopodium quinoa HOM05D003935 ORTHO05D005096 2.3e-102 376.3 213 85.4
Dinv06578 Davidia involucrata HOM05D003935 ORTHO05D005096 3.7e-89 332.4 173 94.2
Nitab4.5_0001358g0020 Nicotiana tabacum HOM05D003935 ORTHO05D005096 3.5e-87 325.9 177 89.3
CBR_g28076 Chara braunii HOM05D003935 ORTHO05D000002 9.5e-85 317.8 252 62.3
MD07G1099100 Malus domestica HOM05D003935 ORTHO05D005096 2.6e-82 309.7 192 80.2
arahy.Tifrunner.gnm1.ann1.VY970J Arachis hypogaea HOM05D003935 ORTHO05D005096 8.4e-73 278.1 164 82.9
Cre02.g102350 Chlamydomonas reinhardtii HOM05D003935 ORTHO05D005096 3.2e-72 276.2 313 49.2
MCO14G260 Micromonas commoda HOM05D003935 ORTHO05D005096 5.4e-72 275.4 312 48.1
Nn051s41922 Nelumbo nucifera HOM05D003935 ORTHO05D005096 2.7e-71 273.1 151 86.8
Nn1g09078 Nelumbo nucifera HOM05D003935 ORTHO05D005096 2.7e-71 273.1 151 86.8
AagrBONN_evm.TU.Sc2ySwM_369.216 Anthoceros agrestis HOM05D003935 ORTHO05D005096 3.3e-69 266.2 272 53.3
arahy.Tifrunner.gnm1.ann1.XHAQ77 Arachis hypogaea HOM05D003935 ORTHO05D005096 1.4e-64 250.8 184 71.7
SEGI_20183 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 1.4e-64 250.8 189 64.6
CsaV3_4G004080 Cucumis sativus L. HOM05D003935 ORTHO05D044846 1.3e-60 237.7 280 50.7
Nitab4.5_0001358g0040 Nicotiana tabacum HOM05D003935 ORTHO05D001473 6.9e-59 231.9 112 97.3
PRCOL_00004022 Prasinoderma coloniale HOM05D003935 ORTHO05D005096 2.6e-58 229.9 300 43.7
Haze_27326 Corylus avellana HOM05D003935 ORTHO05D005096 3.2e-56 223.0 308 41.2
Os10g0560450 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 5.1e-54 215.7 185 62.2
Rhsim01G0073400 Rhododendron simsii HOM05D003935 ORTHO05D005096 4.8e-52 209.1 149 74.5
Rhsim06G0236800 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.2e-50 204.5 142 74.6
MELO3C032833.2 Cucumis melo HOM05D003935 ORTHO05D044846 2.9e-49 199.9 304 45.1
Rhsim11G0131000 Rhododendron simsii HOM05D003935 ORTHO05D005096 2.7e-47 193.4 179 61.5
Zm00001eb216570 Zea mays HOM05D003935 ORTHO05D005096 3.9e-46 189.5 129 71.3
Zm00001eb363440 Zea mays HOM05D003935 ORTHO05D005096 5.1e-46 189.1 113 77.9
Zm00001eb003720 Zea mays HOM05D003935 ORTHO05D005096 1.9e-45 187.2 113 77.0
Zm00001eb078430 Zea mays HOM05D003935 ORTHO05D005096 1.9e-45 187.2 113 77.0
SEGI_13739 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 1.6e-44 184.1 103 84.5
BcaB05g21605 Brassica carinata HOM05D003935 ORTHO05D005096 3.4e-42 176.4 137 65.0
AL7G47000 Arabidopsis lyrata HOM05D003935 ORTHO05D003430 1.9e-40 170.6 170 55.3
Rhsim06G0096100 Rhododendron simsii HOM05D003935 ORTHO05D005096 2.5e-40 170.2 116 76.7
Lj2A404G32 Lonicera japonica HOM05D000092 ORTHO05D000042 1.7e-36 157.5 277 35.7
BcaB01g00746 Brassica carinata HOM05D003935 ORTHO05D005096 6.1e-31 139.0 108 64.8
BcaC04g19029 Brassica carinata HOM05D003935 ORTHO05D005096 6.7e-30 135.6 114 64.0
SEGI_32586 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 9.1e-27 125.2 68 83.8
A09p20840 Brassica napus HOM05D000772 ORTHO05D003239 8.5e-25 118.6 80 72.5
BraA09t37687Z Brassica rapa HOM05D000772 ORTHO05D003239 8.5e-25 118.6 80 72.5
Actinidia10778 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.9e-24 117.5 90 74.4
MD07G1099000 Malus domestica HOM05D003935 ORTHO05D005096 5.5e-24 115.9 60 88.3
CBR_g28077 Chara braunii HOM05D003935 ORTHO05D005096 4.4e-21 106.3 72 68.1
Lj9A23G20 Lonicera japonica HOM05D000092 ORTHO05D000042 2.4e-19 100.5 117 45.3
arahy.Tifrunner.gnm1.ann1.W2J7UU Arachis hypogaea HOM05D003935 ORTHO05D023770 3.1e-19 100.1 53 86.8
Rhsim12G0075300 Rhododendron simsii HOM05D016728 ORTHO05D338590 2.0e-18 97.4 102 58.8
C03p26610 Brassica napus HOM05D003935 ORTHO05D023770 1.7e-17 94.4 89 55.1
SalBow2G0135 Salvia bowleyana HOM05D003935 ORTHO05D357983 1.1e-16 91.7 47 89.4
Zm00001eb269920 Zea mays HOM05D001580 ORTHO05D001517 1.2e-15 88.2 52 80.8
BcaC03g17887 Brassica carinata HOM05D003935 ORTHO05D005096 5.0e-09 66.2 44 72.7
Zm00001eb395010 Zea mays HOM05D034860 ORTHO05D442630 8.0e-07 58.9 37 64.9
BcaC02g10492 Brassica carinata HOM05D036142 ORTHO05D023770 3.0e-06 57.0 67 46.3
C04p28240 Brassica napus HOM05D036142 ORTHO05D023770 3.0e-06 57.0 67 46.3
BolC4t24369H Brassica oleracea HOM05D036142 ORTHO05D023770 3.0e-06 57.0 67 46.3
Zm00001eb363380 Zea mays HOM05D003935 ORTHO05D445556 6.8e-06 55.8 37 62.2


User provided reference genes

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