Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046769 Camellia sinensis var. sinensis HOM05D007164 ORTHO05D008802 3.0e-174 615.1 322 100.0
Actinidia24839 Actinidia chinensis HOM05D007164 ORTHO05D008802 9.8e-77 291.2 349 51.6
Dinv33025 Davidia involucrata HOM05D007164 ORTHO05D008802 5.8e-61 238.8 346 44.5
Rhsim01G0283000 Rhododendron simsii HOM05D007164 ORTHO05D008802 4.1e-59 232.6 313 47.3
vmacro14990 Vaccinium macrocarpon HOM05D007164 ORTHO05D008802 5.2e-54 215.7 330 43.3
Lj2A1189G41 Lonicera japonica HOM05D007164 ORTHO05D008802 2.3e-41 173.7 324 42.3
GSVIVG01010946001 Vitis vinifera HOM05D007164 ORTHO05D008802 6.9e-38 162.2 274 40.5
Potri.002G208058 Populus trichocarpa HOM05D007164 ORTHO05D008802 1.1e-35 154.8 346 36.1
QL12p030187 Quercus lobata HOM05D007164 ORTHO05D008802 5.6e-32 142.5 308 35.7
Haze_04871 Corylus avellana HOM05D007164 ORTHO05D008802 3.4e-29 133.3 275 36.0
Sabra02G0151300 Salix brachista HOM05D007164 ORTHO05D008802 3.4e-29 133.3 286 36.7
Sabra02G0151900 Salix brachista HOM05D007164 ORTHO05D008802 3.4e-29 133.3 286 36.7
Ciclev10017702m.g Citrus clementina HOM05D007164 ORTHO05D008802 4.5e-29 132.9 272 37.5
TWI23G0507 Tripterygium wilfordii HOM05D007164 ORTHO05D008802 9.9e-29 131.7 335 32.8
Manes.01G216000 Manihot esculenta HOM05D007164 ORTHO05D008802 5.4e-27 125.9 334 33.2
AUR62008594 Chenopodium quinoa HOM05D007164 ORTHO05D008802 1.3e-23 114.8 265 34.7
Duzib138G1086 Durio zibethinus HOM05D007164 ORTHO05D008802 1.3e-23 114.8 279 32.3
Gorai.004G088600 Gossypium raimondii HOM05D007164 ORTHO05D008802 1.3e-23 114.8 357 29.4
Gohir.A08G075000 Gossypium hirsutum HOM05D007164 ORTHO05D008802 1.6e-23 114.4 279 33.0
AUR62033184 Chenopodium quinoa HOM05D007164 ORTHO05D008802 3.6e-23 113.2 265 34.3
CANSAT25G0358 Cannabis sativa HOM05D007164 ORTHO05D008802 4.8e-23 112.8 328 32.0
Oeu047456.1 Olea europaea HOM05D007164 ORTHO05D008802 4.8e-23 112.8 322 30.7
Prupe.8G256400 Prunus persica HOM05D007164 ORTHO05D008802 3.1e-22 110.2 277 34.7
COL.COLO4_23399 Corchorus olitorius HOM05D007164 ORTHO05D008802 4.0e-22 109.8 282 31.9
TAR636G2054 Trochodendron aralioides HOM05D007164 ORTHO05D008802 6.9e-22 109.0 359 30.9
DCAR_005809 Daucus carota HOM05D007164 ORTHO05D008802 2.0e-21 107.5 248 34.7
ECA247G0548 Erigeron canadensis HOM05D002562 ORTHO05D002808 9.9e-21 105.1 312 30.1
CiPaw.07G104500 Carya illinoinensis HOM05D007164 ORTHO05D008802 1.7e-20 104.4 138 43.5
arahy.Tifrunner.gnm1.ann1.JK4YNR Arachis hypogaea HOM05D007164 ORTHO05D008802 2.2e-20 104.0 247 34.4
HanXRQChr10g0283971 Helianthus annuus HOM05D007164 ORTHO05D008802 3.8e-20 103.2 262 32.8
MD03G1283300 Malus domestica HOM05D007164 ORTHO05D008802 4.9e-20 102.8 269 32.7
arahy.Tifrunner.gnm1.ann1.PB1NMW Arachis hypogaea HOM05D007164 ORTHO05D008802 6.4e-20 102.4 247 33.6
Gohir.D08G084100 Gossypium hirsutum HOM05D007164 ORTHO05D008802 8.4e-20 102.1 342 28.4
Atru.chr5.1222 Acer truncatum HOM05D007164 ORTHO05D008802 1.4e-19 101.3 151 45.7
Thecc.01G295000 Theobroma cacao HOM05D007164 ORTHO05D008802 5.5e-19 99.4 339 30.4
Nitab4.5_0005474g0060 Nicotiana tabacum HOM05D000498 ORTHO05D000354 3.5e-18 96.7 291 26.8
MBI16_g23765_MAGBIO Magnolia biondii HOM05D007164 ORTHO05D008802 4.6e-18 96.3 289 32.2
arahy.Tifrunner.gnm1.ann1.94G738 Arachis hypogaea HOM05D007164 ORTHO05D008802 1.0e-17 95.1 252 32.5
FvH4_2g25160 Fragaria vesca HOM05D007164 ORTHO05D008802 2.3e-17 94.0 292 29.1
Hund18121 Selenicereus undatus HOM05D007164 ORTHO05D008802 2.3e-17 94.0 258 31.8
Nitab4.5_0009457g0020 Nicotiana tabacum HOM05D007164 ORTHO05D008802 3.0e-17 93.6 291 26.8
Sc17g0003330 Simmondsia chinensis HOM05D007164 ORTHO05D008802 3.9e-17 93.2 338 29.9
Ah.15g093880 Amaranthus hybridus HOM05D007164 ORTHO05D008802 1.1e-16 91.7 333 29.4
RcHm_v2.0_Chr6g0293271 Rosa chinensis HOM05D007164 ORTHO05D008802 1.1e-16 91.7 294 30.3
FAN20G2954 Fragaria x ananassa HOM05D007164 ORTHO05D008802 1.5e-16 91.3 296 30.7
MSTRG.21615 Avicennia marina HOM05D007164 ORTHO05D008802 3.3e-16 90.1 310 28.7
FAN24G2541 Fragaria x ananassa HOM05D007164 ORTHO05D008802 9.6e-16 88.6 296 28.7
Medtr3g082270 Medicago truncatula HOM05D007164 ORTHO05D008802 9.6e-16 88.6 173 37.0
TPR.G27420 Trifolium pratense HOM05D007164 ORTHO05D008802 3.7e-15 86.7 248 32.7
Cpa.g.sc9.198 Carica papaya HOM05D007164 ORTHO05D008802 8.1e-15 85.5 317 29.3
SGA_v2.0_scaffold2G01414 Striga asiatica HOM05D007164 ORTHO05D008802 1.4e-14 84.7 284 28.2
EL10Ac7g17490 Beta vulgaris HOM05D007164 ORTHO05D008802 1.8e-14 84.3 328 29.6
Solyc09g074840.4 Solanum lycopersicum HOM05D007164 ORTHO05D008802 1.8e-14 84.3 319 27.0
Aqoxy2G03039 Aquilegia oxysepala HOM05D007164 ORTHO05D008802 9.0e-14 82.0 274 28.8
Migut.D00187 Erythranthe guttata HOM05D007164 ORTHO05D008802 1.2e-13 81.6 162 37.0
SalBow3G2762 Salvia bowleyana HOM05D007164 ORTHO05D008802 1.5e-13 81.3 277 30.3
Sopen09g029680 Solanum pennellii HOM05D007164 ORTHO05D008802 1.5e-13 81.3 319 27.9
Peaxi162Scf00067g02422 Petunia axillaris HOM05D007164 ORTHO05D008802 2.0e-13 80.9 347 25.9
Lj6g0003922 Lotus japonicus HOM05D007164 ORTHO05D008802 2.6e-13 80.5 186 34.4
FAN27G1449 Fragaria x ananassa HOM05D007164 ORTHO05D008802 4.5e-13 79.7 151 37.7
Lalb_Chr18g0047211 Lupinus albus HOM05D007164 ORTHO05D008802 4.5e-13 79.7 148 39.2
ClCG05G010410 Citrullus lanatus HOM05D007164 ORTHO05D008802 1.0e-12 78.6 282 28.7
Psat5g105520 Pisum sativum HOM05D007164 ORTHO05D008802 4.9e-12 76.3 249 32.1
BolC8t46836H Brassica oleracea HOM05D007164 ORTHO05D008802 1.9e-11 74.3 295 25.8
C08p00350 Brassica napus HOM05D007164 ORTHO05D008802 3.2e-11 73.6 295 25.8
Cc11_g02370 Coffea canephora HOM05D007164 ORTHO05D008802 4.2e-11 73.2 361 24.4
PGSC0003DMG401011367 Solanum tuberosum HOM05D007164 ORTHO05D008802 4.2e-11 73.2 319 27.0
Thhalv10007546m.g Eutrema salsugineum HOM05D007164 ORTHO05D008802 7.1e-11 72.4 289 26.3
AT1G02960 Arabidopsis thaliana HOM05D007164 ORTHO05D008802 2.1e-10 70.9 310 24.8
Oeu047459.1 Olea europaea HOM05D007164 ORTHO05D008802 2.1e-10 70.9 316 27.2
CsaV3_3G018070 Cucumis sativus L. HOM05D007164 ORTHO05D008802 4.6e-10 69.7 138 39.1
Eucgr.K03454 Eucalyptus grandis HOM05D007164 ORTHO05D008802 7.9e-10 68.9 351 25.9
BraA08t35648Z Brassica rapa HOM05D007164 ORTHO05D008802 1.8e-09 67.8 296 25.0
BcaC07g36981 Brassica carinata HOM05D007164 ORTHO05D008802 2.3e-09 67.4 293 25.9
BcaB03g13496 Brassica carinata HOM05D007164 ORTHO05D008802 3.0e-09 67.0 277 24.2
AL1G12400 Arabidopsis lyrata HOM05D007164 ORTHO05D008802 3.9e-09 66.6 298 24.2
Sed0021441 Sechium edule HOM05D007164 ORTHO05D008802 5.1e-09 66.2 262 29.8
A08p37510 Brassica napus HOM05D007164 ORTHO05D008802 6.7e-09 65.9 298 25.2
Glyma.13G007800 Glycine max HOM05D007164 ORTHO05D008802 8.7e-09 65.5 165 31.5
Sp1g01950 Schrenkiella parvula HOM05D007164 ORTHO05D008802 8.7e-09 65.5 313 25.2
Zm00001eb252420 Zea mays HOM05D007164 ORTHO05D008802 1.9e-08 64.3 179 29.1
Carub.0001s0209 Capsella rubella HOM05D007164 ORTHO05D008802 5.7e-08 62.8 309 23.0
THA.LOC104825977 Tarenaya hassleriana HOM05D007164 ORTHO05D008802 3.7e-07 60.1 293 23.5
Phvul.007G122524 Phaseolus vulgaris HOM05D007164 ORTHO05D008802 6.3e-07 59.3 296 24.3
MELO3C019559.2 Cucumis melo HOM05D007164 ORTHO05D008802 8.2e-07 58.9 157 35.0
Lsat_1_v5_gn_9_3101 Lactuca sativa HOM05D007164 ORTHO05D008802 6.9e-06 55.8 116 35.3


User provided reference genes

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