Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046739 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1884.4 992 100.0
CSS0031268 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1850.1 1032 95.4
Actinidia06487 Actinidia chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1479.2 1041 75.2
Dinv19044 Davidia involucrata HOM05D005365 ORTHO05D006910 0.0e+00 1408.3 1041 72.5
vmacro07709 Vaccinium macrocarpon HOM05D005365 ORTHO05D006910 0.0e+00 1351.7 1050 71.6
Lj2C520T1 Lonicera japonica HOM05D005365 ORTHO05D006910 0.0e+00 1335.5 1038 69.8
Hma1.2p1_1583F.1_g291990 Hydrangea macrophylla HOM05D005365 ORTHO05D006910 0.0e+00 1293.5 950 71.8
GSVIVG01014028001 Vitis vinifera HOM05D005365 ORTHO05D006910 0.0e+00 1288.9 1037 67.6
TAR374G0610 Trochodendron aralioides HOM05D005365 ORTHO05D006910 0.0e+00 1283.5 1012 67.5
Cfa007794 Carpinus fangiana HOM05D005365 ORTHO05D006910 0.0e+00 1283.1 1017 66.5
QL02p059099 Quercus lobata HOM05D005365 ORTHO05D006910 0.0e+00 1268.8 1144 62.0
Prupe.3G017700 Prunus persica HOM05D005365 ORTHO05D006910 0.0e+00 1261.1 1036 65.9
Nn4g24353 Nelumbo nucifera HOM05D005365 ORTHO05D006910 0.0e+00 1260.4 1027 64.9
Haze_14277 Corylus avellana HOM05D005365 ORTHO05D006910 0.0e+00 1253.4 1032 64.9
MD09G1270700 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1245.3 1032 65.2
MD17G1268900 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1235.7 1035 65.2
CiPaw.03G073200 Carya illinoinensis HOM05D005365 ORTHO05D006910 0.0e+00 1228.4 1031 66.1
Ciclev10010965m.g Citrus clementina HOM05D005365 ORTHO05D006910 0.0e+00 1223.4 1039 65.4
Potri.004G085500 Populus trichocarpa HOM05D005365 ORTHO05D006910 0.0e+00 1221.1 1054 63.9
FAN26G1336 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1216.8 1031 64.2
Gorai.007G187500 Gossypium raimondii HOM05D005365 ORTHO05D006910 0.0e+00 1213.0 1051 63.0
TWI77G0914 Tripterygium wilfordii HOM05D005365 ORTHO05D006910 0.0e+00 1211.8 980 65.7
Duzib133G0311 Durio zibethinus HOM05D005365 ORTHO05D006910 0.0e+00 1211.1 1047 63.0
Nitab4.5_0012785g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 0.0e+00 1208.4 1046 62.6
Solyc11g011370.2 Solanum lycopersicum HOM05D005365 ORTHO05D006910 0.0e+00 1208.4 1003 64.0
RcHm_v2.0_Chr3g0491161 Rosa chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1206.8 1038 64.0
Cpa.g.sc116.71 Carica papaya HOM05D005365 ORTHO05D006910 0.0e+00 1206.0 1040 63.1
Manes.03G027200 Manihot esculenta HOM05D005365 ORTHO05D006910 0.0e+00 1203.7 1024 63.5
Sopen11g006160 Solanum pennellii HOM05D005365 ORTHO05D006910 0.0e+00 1203.7 1003 63.5
Atru.chr1.1986 Acer truncatum HOM05D005365 ORTHO05D006910 0.0e+00 1193.7 1036 64.2
Aqoxy2G03929 Aquilegia oxysepala HOM05D005365 ORTHO05D006910 0.0e+00 1191.8 1039 62.1
FAN19G1822 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1187.6 1004 64.2
CAN.G222.54 Capsicum annuum HOM05D005365 ORTHO05D006910 0.0e+00 1178.7 1001 62.6
Peaxi162Scf00562g00038 Petunia axillaris HOM05D005365 ORTHO05D006910 0.0e+00 1177.2 1036 61.2
PSO478G2448 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1174.8 1030 62.6
PSO017G3744 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1173.3 1030 62.4
Thecc.04G055200 Theobroma cacao HOM05D005365 ORTHO05D006910 0.0e+00 1171.8 992 63.9
MSTRG.15661 Avicennia marina HOM05D005365 ORTHO05D006910 0.0e+00 1170.6 1035 61.7
Glyma.11G215600 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1156.7 1019 62.5
Sabra04G0056600 Salix brachista HOM05D005365 ORTHO05D006910 0.0e+00 1155.6 1044 61.9
Cc07_g13300 Coffea canephora HOM05D005365 ORTHO05D006910 0.0e+00 1151.0 1038 61.3
ECA238G2923 Erigeron canadensis HOM05D005365 ORTHO05D006910 0.0e+00 1148.7 1033 61.1
Eucgr.F02871 Eucalyptus grandis HOM05D005365 ORTHO05D006910 0.0e+00 1144.8 1047 60.5
Glyma.18G041000 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1144.0 1036 61.3
Lj6g0003323 Lotus japonicus HOM05D005365 ORTHO05D006910 0.0e+00 1143.6 975 62.8
arahy.Tifrunner.gnm1.ann1.WJY350 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1142.5 1019 61.2
Ca_17092_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 0.0e+00 1141.3 1017 61.5
EL10Ac2g03189 Beta vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1138.3 1037 60.8
Gohir.D11G174900 Gossypium hirsutum HOM05D005365 ORTHO05D006910 0.0e+00 1136.3 934 64.2
Phvul.001G229600 Phaseolus vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1132.1 1049 60.8
arahy.Tifrunner.gnm1.ann1.MH7SY7 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1129.0 1019 60.5
Medtr3g065300 Medicago truncatula HOM05D005365 ORTHO05D006910 0.0e+00 1127.5 1038 60.6
Lsat_1_v5_gn_2_68700 Lactuca sativa HOM05D005365 ORTHO05D006910 0.0e+00 1125.9 1035 59.6
AUR62018225 Chenopodium quinoa HOM05D005365 ORTHO05D006910 0.0e+00 1124.8 1039 59.4
ClCG03G008820 Citrullus lanatus HOM05D005365 ORTHO05D006910 0.0e+00 1124.4 1016 59.6
DCAR_028454 Daucus carota HOM05D005365 ORTHO05D006910 0.0e+00 1123.6 1040 60.0
VMungo1383G2900 Vigna mungo HOM05D005365 ORTHO05D006910 0.0e+00 1122.1 1036 59.9
AUR62037789 Chenopodium quinoa HOM05D005365 ORTHO05D006910 0.0e+00 1114.4 1040 59.0
Lalb_Chr15g0084951 Lupinus albus HOM05D005365 ORTHO05D006910 0.0e+00 1112.4 1035 59.5
CANSAT80G2352 Cannabis sativa HOM05D005365 ORTHO05D006910 0.0e+00 1106.3 1039 59.9
MELO3C022831.2 Cucumis melo HOM05D005365 ORTHO05D006910 0.0e+00 1105.9 1010 59.2
Psat5g120520 Pisum sativum HOM05D005365 ORTHO05D006910 0.0e+00 1103.6 1012 59.4
CsaV3_5G023940 Cucumis sativus L. HOM05D005365 ORTHO05D006910 0.0e+00 1100.5 1013 59.0
CARHR215230 Cardamine hirsuta HOM05D005365 ORTHO05D006910 0.0e+00 1095.1 1049 58.2
PGR004G1341 Punica granatum HOM05D005365 ORTHO05D006910 0.0e+00 1094.3 1035 60.5
Migut.K00918 Erythranthe guttata HOM05D005365 ORTHO05D006910 0.0e+00 1093.2 1038 58.5
Hund13093 Selenicereus undatus HOM05D005365 ORTHO05D006910 0.0e+00 1089.7 1022 58.4
SGA_v2.0_scaffold45G17160 Striga asiatica HOM05D005365 ORTHO05D006910 0.0e+00 1087.8 1064 56.2
THA.LOC104805627 Tarenaya hassleriana HOM05D005365 ORTHO05D006910 0.0e+00 1085.9 1064 58.8
Aa31LG9G17470 Aethionema arabicum HOM05D005365 ORTHO05D006910 0.0e+00 1082.4 1048 58.2
Sp7g04480 Schrenkiella parvula HOM05D005365 ORTHO05D006910 1.1e-309 1066.6 1058 57.2
Ca_17099_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 7.4e-309 1063.9 1017 58.9
AL7G46400 Arabidopsis lyrata HOM05D005365 ORTHO05D006910 6.9e-307 1057.4 1044 56.4
Thhalv10027629m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 4.5e-306 1054.7 1061 56.8
AT5G37630 Arabidopsis thaliana HOM05D005365 ORTHO05D006910 3.8e-305 1051.6 1039 56.4
Carub.0007s3279 Capsella rubella HOM05D005365 ORTHO05D006910 1.2e-303 1046.6 1055 55.7
A04p10780 Brassica napus HOM05D005365 ORTHO05D006910 2.1e-303 1045.8 1051 56.7
BraA04t16742Z Brassica rapa HOM05D005365 ORTHO05D006910 2.1e-303 1045.8 1051 56.7
ATR0753G168 Amborella trichopoda HOM05D005365 ORTHO05D006910 5.3e-299 1031.2 1024 55.5
BcaC02g09592 Brassica carinata HOM05D005365 ORTHO05D006910 7.7e-298 1027.3 1055 55.9
BolC4t26020H Brassica oleracea HOM05D005365 ORTHO05D006910 1.7e-297 1026.2 1055 55.9
Rhsim10G0178300 Rhododendron simsii HOM05D005365 ORTHO05D006910 6.5e-297 1024.2 1045 58.9
Zm00001eb379890 Zea mays HOM05D005365 ORTHO05D006910 3.2e-296 1021.9 1038 54.4
C04p44500 Brassica napus HOM05D005365 ORTHO05D006910 4.7e-295 1018.1 1080 54.6
BcaB06g27110 Brassica carinata HOM05D005365 ORTHO05D006910 6.1e-295 1017.7 1046 55.7
MBI19_g22067_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 7.2e-288 994.2 1169 50.9
Nitab4.5_0000201g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 2.2e-284 982.6 928 58.9
FAN23G0266 Fragaria x ananassa HOM05D005365 ORTHO05D006910 7.2e-272 941.0 746 66.2
FvH4_1g30230 Fragaria vesca HOM05D005365 ORTHO05D006910 5.2e-270 934.9 746 66.1
CDE05G1264 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 2.6e-269 932.6 833 58.6
Actinidia17204 Actinidia chinensis HOM05D005365 ORTHO05D006910 7.5e-269 931.0 653 73.5
COL.COLO4_13431 Corchorus olitorius HOM05D005365 ORTHO05D006910 5.4e-267 924.9 994 54.4
Gohir.A11G168700 Gossypium hirsutum HOM05D005365 ORTHO05D006910 1.2e-263 913.7 719 65.8
Ah.10g032430 Amaranthus hybridus HOM05D005365 ORTHO05D006910 3.5e-258 895.6 773 61.3
Sc11g0004580 Simmondsia chinensis HOM05D005365 ORTHO05D006910 8.9e-254 880.9 745 62.8
Sed0006074 Sechium edule HOM05D005365 ORTHO05D006910 4.4e-253 878.6 743 61.8
Dinv28185 Davidia involucrata HOM05D005365 ORTHO05D006910 1.1e-246 857.4 555 80.0
unitig_0.g2645 Utricularia gibba HOM05D005365 ORTHO05D006910 5.8e-213 745.3 980 45.8
PGSC0003DMG400013306 Solanum tuberosum HOM05D005365 ORTHO05D006910 4.2e-211 739.2 671 59.8
HPP92_006138 Vanilla planifolia HOM05D005365 ORTHO05D006910 1.9e-203 713.8 603 61.7
Pp3c22_14670 Physcomitrium patens HOM05D005365 ORTHO05D006910 9.1e-182 641.7 1031 39.0
TPR.G24911 Trifolium pratense HOM05D005365 ORTHO05D006910 7.7e-181 638.6 559 60.3
SEGI_16018 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 1.3e-172 611.3 712 49.0
Mapoly0032s0119 Marchantia polymorpha HOM05D005365 ORTHO05D006910 4.7e-162 576.2 880 40.2
SMO367G0263 Selaginella moellendorffii HOM05D005365 ORTHO05D006910 1.9e-155 554.3 915 37.9
GSVIVG01038363001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.3e-151 541.6 428 65.0
AagrBONN_evm.TU.Sc2ySwM_228.4009 Anthoceros agrestis HOM05D005365 ORTHO05D006910 2.1e-146 524.2 971 36.9
Thhalv10027679m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 2.7e-141 507.3 673 47.8
Oeu012492.1 Olea europaea HOM05D005365 ORTHO05D006910 2.2e-103 381.3 762 39.4
GSVIVG01038362001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.1e-91 342.4 248 73.0
SEGI_18021 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 5.7e-91 340.1 302 57.6
Oeu012494.1 Olea europaea HOM05D005365 ORTHO05D006910 2.1e-85 321.6 239 68.2
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 1.7e-74 285.4 233 61.4
CBR_g39392 Chara braunii HOM05D000019 ORTHO05D000048 3.7e-74 284.3 418 38.3
Os06g0256000 Oryza sativa ssp. japonica HOM05D005365 ORTHO05D006910 2.0e-72 278.5 389 43.4
CDE05G3412 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 3.2e-70 271.2 192 71.4
SGA_v2.0_scaffold45G17195 Striga asiatica HOM05D005365 ORTHO05D006910 2.3e-68 265.0 356 43.8
MBI19_g43231_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 5.1e-68 263.8 230 62.2
MCO13G329 Micromonas commoda HOM05D005365 ORTHO05D006910 1.7e-66 258.8 702 28.5
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 5.5e-62 243.8 195 62.1
TPR.G674 Trifolium pratense HOM05D005365 ORTHO05D006910 1.1e-57 229.6 260 53.1
PRCOL_00005851 Prasinoderma coloniale HOM05D005365 ORTHO05D006910 4.0e-52 211.1 805 26.2
CAN.G691.4 Capsicum annuum HOM05D005365 ORTHO05D006910 1.9e-46 192.2 302 41.1
HPP92_006139 Vanilla planifolia HOM05D005365 ORTHO05D006910 2.1e-45 188.7 283 46.3
GSVIVG01030692001 Vitis vinifera HOM05D005365 ORTHO05D006910 3.6e-37 161.4 121 73.6
SGA_v2.0_scaffold45G17196 Striga asiatica HOM05D005365 ORTHO05D006910 4.0e-36 157.9 108 75.0
Gorai.005G096400 Gossypium raimondii HOM05D005365 ORTHO05D015145 1.4e-20 106.3 68 76.5
Gohir.D04G112220 Gossypium hirsutum HOM05D005365 ORTHO05D006910 3.1e-20 105.1 68 76.5
Nn1g00453 Nelumbo nucifera HOM05D005365 ORTHO05D006910 1.5e-19 102.8 64 76.6
Psat1g154520 Pisum sativum HOM05D005365 ORTHO05D006910 2.0e-19 102.4 86 60.5
Cfa023924 Carpinus fangiana HOM05D005365 ORTHO05D006910 9.2e-17 93.6 613 23.3
TPR.G7041 Trifolium pratense HOM05D005365 ORTHO05D006910 3.0e-15 88.6 52 82.7
GSVIVG01030691001 Vitis vinifera HOM05D005365 ORTHO05D006910 5.1e-15 87.8 70 61.4
Psat7g195800 Pisum sativum HOM05D005365 ORTHO05D006910 8.6e-15 87.0 75 66.7
Gohir.D09G013833 Gossypium hirsutum HOM05D005365 ORTHO05D015145 2.0e-11 75.9 46 80.4
Sabra17G0109200 Salix brachista HOM05D005365 ORTHO05D349400 3.4e-11 75.1 286 28.0
SEGI_04861 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 8.4e-10 70.5 79 46.8


User provided reference genes

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