Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 0.0e+00 1708.0 938 100.0
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 0.0e+00 1318.9 940 79.7
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 0.0e+00 1240.3 938 69.7
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 0.0e+00 1078.5 961 62.9
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 3.1e-296 1021.9 930 59.1
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 1.8e-288 996.1 935 57.9
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 8.9e-288 993.8 941 62.2
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 7.8e-284 980.7 921 57.1
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 1.2e-281 973.4 932 63.3
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 1.2e-279 966.8 939 56.5
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 2.6e-279 965.7 938 55.7
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 1.1e-277 960.3 931 56.2
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.9e-277 959.5 931 55.7
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 3.2e-277 958.7 950 55.1
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 6.2e-273 944.5 924 57.1
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 2.4e-272 942.6 931 54.2
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 1.2e-271 940.3 928 54.3
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 2.0e-271 939.5 937 61.7
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 2.0e-271 939.5 931 57.3
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 1.7e-270 936.4 939 58.0
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 8.4e-270 934.1 938 54.9
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 1.4e-269 933.3 931 61.4
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 4.3e-266 921.8 930 61.6
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 5.6e-266 921.4 936 54.3
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 5.6e-266 921.4 940 53.5
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 1.3e-265 920.2 936 52.9
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 2.1e-265 919.5 929 61.5
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 2.8e-265 919.1 947 54.3
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 4.8e-265 918.3 933 53.1
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 2.4e-264 916.0 941 57.2
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 3.1e-264 915.6 940 53.9
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 9.0e-264 914.1 939 54.4
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 1.5e-263 913.3 942 53.9
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 2.0e-263 912.9 935 60.2
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 2.6e-263 912.5 940 54.1
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 2.6e-263 912.5 1089 51.5
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 9.9e-263 910.6 937 54.0
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 1.7e-262 909.8 940 54.1
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 2.9e-262 909.1 930 55.2
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 1.1e-261 907.1 818 59.3
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 1.9e-261 906.4 925 53.5
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 4.6e-260 901.7 938 53.9
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 5.6e-258 894.8 939 54.4
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 5.8e-255 884.8 921 54.3
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 1.1e-253 880.6 940 52.8
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 3.5e-252 875.5 936 53.1
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 3.9e-251 872.1 936 51.0
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 1.9e-250 869.8 898 55.6
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 2.5e-250 869.4 933 54.0
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 3.7e-249 865.5 947 51.3
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 1.4e-248 863.6 948 51.5
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 9.0e-248 860.9 914 51.6
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 2.0e-247 859.8 930 50.5
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 1.0e-246 857.4 1009 50.1
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 8.7e-243 844.3 937 50.7
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 1.5e-242 843.6 939 51.5
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 8.2e-241 837.8 940 51.2
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 1.8e-240 836.6 937 50.1
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 1.2e-239 833.9 929 52.3
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 1.0e-238 830.9 940 49.9
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 1.9e-237 826.6 930 49.5
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 1.6e-236 823.5 933 53.1
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 2.1e-236 823.2 930 49.6
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 1.3e-235 820.5 933 52.9
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 3.9e-235 818.9 937 49.2
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 3.3e-234 815.8 944 50.3
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 5.7e-234 815.1 944 50.1
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 5.7e-234 815.1 731 59.2
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 1.3e-233 813.9 929 52.9
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 5.0e-230 802.0 929 49.5
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 1.4e-229 800.4 942 50.0
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 2.5e-229 799.7 934 50.2
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 2.1e-228 796.6 960 52.3
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 6.1e-228 795.0 932 50.0
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 1.5e-226 790.4 935 49.2
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 9.7e-226 787.7 931 49.1
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 1.6e-220 770.4 925 49.7
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 1.8e-219 766.9 927 49.9
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 6.7e-219 765.0 919 48.6
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 2.0e-210 736.9 710 56.2
unitig_8.g5004 Utricularia gibba HOM05D004183 ORTHO05D005022 3.3e-210 736.1 935 51.9
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 9.7e-210 734.6 685 57.2
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 1.5e-205 720.7 1173 39.4
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 6.1e-204 715.3 757 53.9
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 6.1e-204 715.3 933 45.7
DCAR_009033 Daucus carota HOM05D004183 ORTHO05D005022 1.0e-203 714.5 653 58.3
ECA246G4622 Erigeron canadensis HOM05D004183 ORTHO05D005022 2.6e-202 709.9 720 59.2
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 1.2e-196 691.0 926 45.9
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 8.0e-188 661.8 724 51.0
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 9.8e-186 654.8 852 47.1
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 6.4e-185 652.1 913 45.7
Zm00001eb096590 Zea mays HOM05D004183 ORTHO05D005022 1.4e-184 651.0 929 44.8
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 5.9e-183 645.6 691 56.3
BraA03t10145Z Brassica rapa HOM05D004183 ORTHO05D005022 4.3e-181 639.4 924 45.0
Os07g0455100 Oryza sativa ssp. japonica HOM05D004183 ORTHO05D005022 1.6e-180 637.5 823 47.9
CiPaw.15G184500 Carya illinoinensis HOM05D004183 ORTHO05D005022 3.1e-179 633.3 499 65.5
VMungo1309G0357 Vigna mungo HOM05D004183 ORTHO05D005022 1.6e-164 584.3 937 41.1
Ciclev10033903m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.9e-160 570.9 559 56.9
Mapoly0026s0116 Marchantia polymorpha HOM05D004183 ORTHO05D005022 2.7e-151 540.4 966 40.8
Ciclev10031527m.g Citrus clementina HOM05D004183 ORTHO05D005022 7.6e-146 522.3 444 60.6
AUR62031288 Chenopodium quinoa HOM05D004183 ORTHO05D005022 6.9e-139 499.2 483 54.7
SHI30096 Sapria himalayana HOM05D004183 ORTHO05D005022 1.1e-133 481.9 928 37.2
Ciclev10033525m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.3e-129 468.4 492 52.4
Pp3c1_12830 Physcomitrium patens HOM05D004183 ORTHO05D005022 1.8e-126 458.0 939 38.8
VMungo1309G0778 Vigna mungo HOM05D004183 ORTHO05D005022 4.8e-124 449.9 493 52.7
HPP92_011016 Vanilla planifolia HOM05D004183 ORTHO05D005022 6.7e-118 429.5 467 50.7
VMungo1309G2786 Vigna mungo HOM05D004183 ORTHO05D005022 1.3e-116 425.2 416 55.8
Glyma.06G161100 Glycine max HOM05D004183 ORTHO05D005022 2.4e-115 421.0 494 52.0
AagrBONN_evm.TU.Sc2ySwM_344.1225 Anthoceros agrestis HOM05D004183 ORTHO05D005022 7.2e-112 409.5 485 48.0
RcHm_v2.0_Chr1g0320041 Rosa chinensis HOM05D004183 ORTHO05D005022 8.5e-97 359.4 487 45.0
AUR62031284 Chenopodium quinoa HOM05D004183 ORTHO05D005022 6.1e-95 353.2 479 45.7
Ciclev10033738m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.8e-92 344.4 427 47.8
RcHm_v2.0_Chr1g0319751 Rosa chinensis HOM05D004183 ORTHO05D005022 4.1e-91 340.5 368 51.9
RcHm_v2.0_Chr1g0319811 Rosa chinensis HOM05D004183 ORTHO05D005022 3.5e-90 337.4 402 48.5
Cpa.g.sc178.29 Carica papaya HOM05D004183 ORTHO05D005022 6.5e-89 333.2 396 49.7
COL.COLO4_14587 Corchorus olitorius HOM05D004183 ORTHO05D005022 7.2e-88 329.7 491 44.4
Hund12628 Selenicereus undatus HOM05D004183 ORTHO05D005022 1.4e-86 325.5 193 78.8
Hund27690 Selenicereus undatus HOM05D004183 ORTHO05D005022 1.4e-86 325.5 193 78.8
CBR_g19343 Chara braunii HOM05D004183 ORTHO05D005022 8.3e-84 316.2 526 37.1
MCO15G220 Micromonas commoda HOM05D004183 ORTHO05D005022 2.0e-74 285.0 990 26.9
RcHm_v2.0_Chr1g0320901 Rosa chinensis HOM05D004183 ORTHO05D005022 1.2e-71 275.8 331 48.6
Cpa.g.sc178.30 Carica papaya HOM05D004183 ORTHO05D005022 2.8e-71 274.6 338 47.9
Ciclev10031844m.g Citrus clementina HOM05D004183 ORTHO05D005022 3.5e-66 257.7 249 57.0
RcHm_v2.0_Chr1g0320781 Rosa chinensis HOM05D004183 ORTHO05D005022 6.0e-66 256.9 230 61.3
RcHm_v2.0_Chr1g0319801 Rosa chinensis HOM05D004183 ORTHO05D005022 1.7e-65 255.4 182 69.8
Cre09.g401700 Chlamydomonas reinhardtii HOM05D004183 ORTHO05D005022 1.4e-62 245.7 491 33.6
CARHR154510 Cardamine hirsuta HOM05D004183 ORTHO05D005022 7.5e-61 240.0 250 48.4
Ciclev10033659m.g Citrus clementina HOM05D004183 ORTHO05D005022 6.6e-57 226.9 466 34.5
RcHm_v2.0_Chr1g0319861 Rosa chinensis HOM05D004183 ORTHO05D005022 1.4e-54 219.2 616 30.4
SMO147G0329 Selaginella moellendorffii HOM05D004183 ORTHO05D005022 1.4e-54 219.2 388 51.8
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 1.2e-50 206.1 350 43.7
CARHR154500 Cardamine hirsuta HOM05D004183 ORTHO05D005022 2.3e-49 201.8 223 48.4
CARHR154520 Cardamine hirsuta HOM05D004183 ORTHO05D005022 6.6e-49 200.3 172 57.0
SEGI_18489 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 1.5e-45 189.1 300 41.7
Ciclev10032594m.g Citrus clementina HOM05D004183 ORTHO05D005022 6.4e-44 183.7 249 45.4
Ciclev10033120m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.9e-43 182.2 107 80.4
SEGI_41562 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 2.3e-41 175.3 137 59.1
Hund12629 Selenicereus undatus HOM05D004183 ORTHO05D005022 3.6e-39 167.9 177 51.4
Hund27689 Selenicereus undatus HOM05D004183 ORTHO05D005022 3.6e-39 167.9 177 51.4
PRCOL_00002789 Prasinoderma coloniale HOM05D004183 ORTHO05D005022 3.4e-37 161.4 455 27.5
RcHm_v2.0_Chr1g0320911 Rosa chinensis HOM05D004183 ORTHO05D005022 5.1e-33 147.5 170 48.2
RcHm_v2.0_Chr1g0319761 Rosa chinensis HOM05D004183 ORTHO05D005022 1.5e-32 146.0 170 47.6
RcHm_v2.0_Chr1g0319771 Rosa chinensis HOM05D004183 ORTHO05D005022 3.8e-28 131.3 89 70.8
BcaB01g04944 Brassica carinata HOM05D004183 ORTHO05D005022 6.4e-28 130.6 197 42.1
RcHm_v2.0_Chr1g0320761 Rosa chinensis HOM05D004183 ORTHO05D005022 2.4e-27 128.6 107 61.7
MBI08_g38580_MAGBIO Magnolia biondii HOM05D004183 ORTHO05D005022 4.3e-24 117.9 78 78.2
RcHm_v2.0_Chr1g0320921 Rosa chinensis HOM05D004183 ORTHO05D005022 3.1e-22 111.7 79 69.6
Cfa027322 Carpinus fangiana HOM05D004183 ORTHO05D005022 1.3e-20 106.3 676 22.5
CBR_g19342 Chara braunii HOM05D000019 ORTHO05D000002 8.7e-17 93.6 193 34.2
CDE09G0586 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 1.1e-16 93.2 75 53.3
HPP92_027571 Vanilla planifolia HOM05D004183 ORTHO05D005022 1.5e-16 92.8 72 61.1
COL.COLO4_14589 Corchorus olitorius HOM05D004183 ORTHO05D005022 7.4e-16 90.5 197 34.5
SEGI_06721 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 8.2e-15 87.0 157 40.1
SEGI_41292 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 7.6e-13 80.5 204 33.8
BcaC08g45519 Brassica carinata HOM05D004183 ORTHO05D005022 1.3e-12 79.7 122 37.7
Psat5g100440 Pisum sativum HOM05D004183 ORTHO05D005022 1.4e-11 76.3 159 36.5
Hma1.2p1_0197F.1_g085110 Hydrangea macrophylla HOM05D004183 ORTHO05D008470 7.9e-10 70.5 45 73.3
C06p19910 Brassica napus HOM05D016195 ORTHO05D033444 3.1e-06 58.5 61 44.3
QL05p081774 Quercus lobata HOM05D004183 ORTHO05D005022 3.1e-06 58.5 67 52.2


User provided reference genes

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