Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046716 Camellia sinensis var. sinensis HOM05D007077 ORTHO05D008853 2.1e-61 238.8 115 100.0
CSS0033721 Camellia sinensis var. sinensis HOM05D007077 ORTHO05D008853 6.9e-49 197.2 94 97.9
Actinidia07437 Actinidia chinensis HOM05D007077 ORTHO05D008853 2.7e-45 185.3 107 77.6
Rhsim03G0246400 Rhododendron simsii HOM05D007077 ORTHO05D008853 1.0e-44 183.3 113 74.3
vmacro06174 Vaccinium macrocarpon HOM05D007077 ORTHO05D008853 1.3e-42 176.4 109 73.4
TAR636G1135 Trochodendron aralioides HOM05D007077 ORTHO05D008853 2.8e-42 175.3 104 75.0
GSVIVG01035379001 Vitis vinifera HOM05D007077 ORTHO05D008853 1.1e-41 173.3 105 74.3
MBI04_g10421_MAGBIO Magnolia biondii HOM05D007077 ORTHO05D008853 3.4e-40 168.3 105 72.4
CiPaw.03G240800 Carya illinoinensis HOM05D007077 ORTHO05D008853 1.3e-39 166.4 103 70.9
Dinv36561 Davidia involucrata HOM05D007077 ORTHO05D008853 3.2e-38 161.8 111 68.5
FAN23G2971 Fragaria x ananassa HOM05D007077 ORTHO05D008853 3.2e-38 161.8 103 68.9
FAN26G2340 Fragaria x ananassa HOM05D007077 ORTHO05D008853 3.2e-38 161.8 103 68.9
RcHm_v2.0_Chr2g0089201 Rosa chinensis HOM05D007077 ORTHO05D008853 4.2e-38 161.4 103 68.0
FvH4_1g03790 Fragaria vesca HOM05D007077 ORTHO05D008853 7.1e-38 160.6 103 68.0
FAN19G1922 Fragaria x ananassa HOM05D007077 ORTHO05D008853 7.1e-38 160.6 103 68.0
QL02p087620 Quercus lobata HOM05D007077 ORTHO05D008853 1.6e-37 159.5 103 63.1
Thecc.09G122000 Theobroma cacao HOM05D007077 ORTHO05D008853 3.5e-37 158.3 103 64.1
Prupe.7G238900 Prunus persica HOM05D007077 ORTHO05D008853 4.6e-37 157.9 103 66.0
Atru.chr7.1226 Acer truncatum HOM05D007077 ORTHO05D008853 2.3e-36 155.6 104 64.4
Sabra03G0099300 Salix brachista HOM05D007077 ORTHO05D008853 2.3e-36 155.6 104 63.5
MD02G1036500 Malus domestica HOM05D007077 ORTHO05D008853 3.0e-36 155.2 102 67.6
Eucgr.C04175 Eucalyptus grandis HOM05D007077 ORTHO05D008853 6.7e-36 154.1 103 60.2
Potri.003G137900 Populus trichocarpa HOM05D007077 ORTHO05D008853 8.7e-36 153.7 103 62.1
COL.COLO4_35188 Corchorus olitorius HOM05D007077 ORTHO05D008853 1.9e-35 152.5 102 64.7
Actinidia26405 Actinidia chinensis HOM05D007077 ORTHO05D008853 2.5e-35 152.1 85 80.0
Duzib168G0686 Durio zibethinus HOM05D007077 ORTHO05D008853 2.5e-35 152.1 103 63.1
Psat4g041880 Pisum sativum HOM05D007077 ORTHO05D008853 9.6e-35 150.2 103 61.2
TWI63G0911 Tripterygium wilfordii HOM05D007077 ORTHO05D008853 1.6e-34 149.4 103 60.2
Gohir.A05G018500 Gossypium hirsutum HOM05D007077 ORTHO05D008853 3.7e-34 148.3 103 61.2
arahy.Tifrunner.gnm1.ann1.7ZPA8Y Arachis hypogaea HOM05D007077 ORTHO05D008853 4.8e-34 147.9 100 63.0
arahy.Tifrunner.gnm1.ann1.BTXG8Q Arachis hypogaea HOM05D007077 ORTHO05D008853 4.8e-34 147.9 100 63.0
Duzib150G1251 Durio zibethinus HOM05D007077 ORTHO05D008853 8.1e-34 147.1 103 61.2
CDE06G0710 Ceratophyllum demersum HOM05D007077 ORTHO05D008853 1.1e-33 146.7 105 67.6
Manes.06G053400 Manihot esculenta HOM05D007077 ORTHO05D008853 1.1e-33 146.7 103 62.1
Gorai.009G019800 Gossypium raimondii HOM05D007077 ORTHO05D008853 1.4e-33 146.4 103 60.2
COL.COLO4_05999 Corchorus olitorius HOM05D007077 ORTHO05D008853 2.4e-33 145.6 103 60.2
Lalb_Chr07g0178761 Lupinus albus HOM05D007077 ORTHO05D008853 2.4e-33 145.6 102 60.8
Gohir.D05G019400 Gossypium hirsutum HOM05D007077 ORTHO05D008853 6.9e-33 144.1 103 59.2
Cpa.g.sc75.76 Carica papaya HOM05D007077 ORTHO05D008853 1.5e-32 142.9 97 62.9
Glyma.05G009400 Glycine max HOM05D007077 ORTHO05D008853 3.4e-32 141.7 100 61.0
Glyma.17G117400 Glycine max HOM05D007077 ORTHO05D008853 3.4e-32 141.7 100 60.0
Lj4g0023379 Lotus japonicus HOM05D007077 ORTHO05D008853 3.4e-32 141.7 95 63.2
Os01g0612800 Oryza sativa ssp. japonica HOM05D007077 ORTHO05D008853 7.6e-32 140.6 114 58.8
A07p29070 Brassica napus HOM05D007077 ORTHO05D008853 1.3e-31 139.8 103 55.3
Sed0015086 Sechium edule HOM05D007077 ORTHO05D008853 1.3e-31 139.8 103 57.3
Phvul.003G162000 Phaseolus vulgaris HOM05D007077 ORTHO05D008853 2.9e-31 138.7 102 56.9
BolC6t38404H Brassica oleracea HOM05D007077 ORTHO05D008853 3.8e-31 138.3 101 56.4
VMungo1215G0506 Vigna mungo HOM05D007077 ORTHO05D008853 3.8e-31 138.3 102 56.9
BcaB02g06994 Brassica carinata HOM05D007077 ORTHO05D008853 6.5e-31 137.5 101 56.4
C06p32830 Brassica napus HOM05D007077 ORTHO05D008853 6.5e-31 137.5 101 56.4
Thhalv10019349m.g Eutrema salsugineum HOM05D007077 ORTHO05D008853 6.5e-31 137.5 100 60.0
AL2G35020 Arabidopsis lyrata HOM05D007077 ORTHO05D008853 1.1e-30 136.7 101 57.4
Carub.0002s2191 Capsella rubella HOM05D007077 ORTHO05D008853 1.4e-30 136.3 100 59.0
Pp3c10_2110 Physcomitrium patens HOM05D007077 ORTHO05D008853 1.4e-30 136.3 111 55.0
Sp5g30250 Schrenkiella parvula HOM05D007077 ORTHO05D008853 1.4e-30 136.3 101 57.4
THA.LOC104826537 Tarenaya hassleriana HOM05D007077 ORTHO05D008853 1.4e-30 136.3 103 55.3
TPR.G10683 Trifolium pratense HOM05D007077 ORTHO05D008853 1.4e-30 136.3 103 55.3
BcaB05g24885 Brassica carinata HOM05D007077 ORTHO05D008853 1.9e-30 136.0 101 55.4
Phvul.003G161700 Phaseolus vulgaris HOM05D007077 ORTHO05D008853 1.9e-30 136.0 100 58.0
AT1G75125 Arabidopsis thaliana HOM05D007077 ORTHO05D008853 2.5e-30 135.6 101 56.4
Aa31LG4G5320 Aethionema arabicum HOM05D007077 ORTHO05D008853 3.2e-30 135.2 102 55.9
Medtr4g113750 Medicago truncatula HOM05D007077 ORTHO05D008853 5.5e-30 134.4 94 61.7
CARHR068440 Cardamine hirsuta HOM05D007077 ORTHO05D008853 1.2e-29 133.3 100 57.0
Nitab4.5_0000167g0170 Nicotiana tabacum HOM05D007077 ORTHO05D008853 3.5e-29 131.7 102 57.8
CDE07G1647 Ceratophyllum demersum HOM05D007077 ORTHO05D008853 4.6e-29 131.3 84 71.4
Peaxi162Scf01013g00228 Petunia axillaris HOM05D007077 ORTHO05D008853 4.6e-29 131.3 102 57.8
CARHR068450 Cardamine hirsuta HOM05D007077 ORTHO05D008853 1.3e-28 129.8 101 55.4
BcaB02g07008 Brassica carinata HOM05D007077 ORTHO05D008853 2.3e-28 129.0 102 52.0
BraA07t30546Z Brassica rapa HOM05D007077 ORTHO05D008853 3.0e-28 128.6 103 52.4
Hma1.2p1_0665F.1_g199210 Hydrangea macrophylla HOM05D007077 ORTHO05D008853 3.9e-28 128.3 62 83.9
PGR102G1835 Punica granatum HOM05D007077 ORTHO05D008853 3.9e-28 128.3 103 54.4
Mapoly0015s0040 Marchantia polymorpha HOM05D007077 ORTHO05D008853 5.1e-28 127.9 105 55.2
CsaV3_2G002680 Cucumis sativus L. HOM05D007077 ORTHO05D008853 8.7e-28 127.1 103 52.4
CAN.G307.7 Capsicum annuum HOM05D007077 ORTHO05D008853 1.9e-27 125.9 102 53.9
Haze_25634 Corylus avellana HOM05D007077 ORTHO05D008853 3.3e-27 125.2 91 59.3
Hund09149 Selenicereus undatus HOM05D007077 ORTHO05D008853 3.3e-27 125.2 98 56.1
Ah.05g167190 Amaranthus hybridus HOM05D007077 ORTHO05D008853 9.6e-27 123.6 103 54.4
Ciclev10010021m.g Citrus clementina HOM05D007077 ORTHO05D008853 3.7e-26 121.7 83 63.9
QL05p072824 Quercus lobata HOM05D003311 ORTHO05D008853 4.8e-26 121.3 90 56.7
BcaC03g15541 Brassica carinata HOM05D007077 ORTHO05D008853 6.3e-26 120.9 100 52.0
BolC2t09261H Brassica oleracea HOM05D007077 ORTHO05D008853 6.3e-26 120.9 100 52.0
Sopen03g004510 Solanum pennellii HOM05D007077 ORTHO05D008853 6.3e-26 120.9 102 52.0
CDE07G0486 Ceratophyllum demersum HOM05D007077 ORTHO05D008853 1.4e-25 119.8 75 69.3
QL02p031889 Quercus lobata HOM05D007077 ORTHO05D008853 1.4e-25 119.8 100 52.0
QL93p2004_0148 Quercus lobata HOM05D007077 ORTHO05D008853 1.4e-25 119.8 100 52.0
SalBow6G6978 Salvia bowleyana HOM05D007077 ORTHO05D008853 2.4e-25 119.0 103 53.4
MSTRG.10653 Avicennia marina HOM05D007077 ORTHO05D008853 6.9e-25 117.5 103 53.4
AagrBONN_evm.TU.Sc2ySwM_368.923 Anthoceros agrestis HOM05D007077 ORTHO05D008853 9.0e-25 117.1 100 48.0
ClCG11G002840 Citrullus lanatus HOM05D007077 ORTHO05D008853 1.5e-24 116.3 122 45.9
A02p19700 Brassica napus HOM05D007077 ORTHO05D008853 2.6e-24 115.5 105 48.6
BraA02t07006Z Brassica rapa HOM05D007077 ORTHO05D008853 2.6e-24 115.5 105 48.6
Solyc03g025690.4 Solanum lycopersicum HOM05D007077 ORTHO05D008853 3.4e-24 115.2 105 50.5
Oeu055966.1 Olea europaea HOM05D007077 ORTHO05D008853 4.5e-24 114.8 104 53.8
Migut.K00414 Erythranthe guttata HOM05D007077 ORTHO05D008853 2.2e-23 112.5 105 50.5
SMO137G0334 Selaginella moellendorffii HOM05D007077 ORTHO05D008853 5.0e-23 111.3 94 51.1
EL10Ac8g18603 Beta vulgaris HOM05D007077 ORTHO05D008853 1.4e-22 109.8 88 56.8
SGA_v2.0_scaffold51G18726 Striga asiatica HOM05D007077 ORTHO05D008853 1.9e-22 109.4 99 49.5
Manes.14G129700 Manihot esculenta HOM05D007077 ORTHO05D008853 2.5e-22 109.0 91 52.7
Sed0025696 Sechium edule HOM05D007077 ORTHO05D008853 2.5e-22 109.0 91 49.5
Cc09_g03400 Coffea canephora HOM05D007077 ORTHO05D008853 4.2e-22 108.2 63 68.3
GSVIVG01015495001 Vitis vinifera HOM05D007077 ORTHO05D008853 1.3e-20 103.2 64 71.9
Nitab4.5_0001579g0110 Nicotiana tabacum HOM05D007077 ORTHO05D008853 8.7e-20 100.5 107 43.9
Lsat_1_v5_gn_5_98981 Lactuca sativa HOM05D007077 ORTHO05D008853 2.5e-19 99.0 109 45.0
HanXRQChr01g0017151 Helianthus annuus HOM05D007077 ORTHO05D008853 4.3e-19 98.2 126 42.9
PGSC0003DMG400014298 Solanum tuberosum HOM05D007077 ORTHO05D008853 2.2e-18 95.9 90 46.7
HanXRQChr12g0356451 Helianthus annuus HOM05D007077 ORTHO05D008853 2.6e-16 89.0 125 40.0
MELO3C031577.2 Cucumis melo HOM05D007077 ORTHO05D008853 6.5e-15 84.3 91 41.8
C02p32320 Brassica napus HOM05D007077 ORTHO05D008853 1.9e-14 82.8 46 73.9
CBR_g10839 Chara braunii HOM05D001161 ORTHO05D000497 2.5e-11 72.4 98 37.8
MCO14G029 Micromonas commoda HOM05D007077 ORTHO05D008853 1.5e-08 63.2 100 32.0
QL03p062338 Quercus lobata HOM05D007077 ORTHO05D008853 4.2e-06 55.1 58 46.6


User provided reference genes

Program Settings