Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046699 Camellia sinensis var. sinensis HOM05D006286 ORTHO05D007741 6.8e-136 487.3 237 100.0
Rhsim03G0175100 Rhododendron simsii HOM05D006286 ORTHO05D007741 7.1e-117 424.1 236 86.4
Actinidia25052 Actinidia chinensis HOM05D006286 ORTHO05D007741 7.1e-109 397.5 233 82.8
CiPaw.03G100700 Carya illinoinensis HOM05D006286 ORTHO05D007741 5.1e-107 391.3 237 82.3
Haze_13788 Corylus avellana HOM05D006286 ORTHO05D007741 2.5e-106 389.0 238 81.9
vmacro09869 Vaccinium macrocarpon HOM05D006286 ORTHO05D007741 1.6e-105 386.3 233 80.7
arahy.Tifrunner.gnm1.ann1.MQ4KH5 Arachis hypogaea HOM05D006286 ORTHO05D007741 2.1e-105 386.0 241 78.4
Cfa008258 Carpinus fangiana HOM05D006286 ORTHO05D007741 4.8e-105 384.8 238 81.5
Actinidia14215 Actinidia chinensis HOM05D006286 ORTHO05D007741 8.2e-105 384.0 248 78.2
Rhsim09G0195200 Rhododendron simsii HOM05D006286 ORTHO05D007741 8.2e-105 384.0 233 79.8
Manes.14G030600 Manihot esculenta HOM05D006286 ORTHO05D007741 1.4e-104 383.3 237 79.3
RcHm_v2.0_Chr1g0376301 Rosa chinensis HOM05D006286 ORTHO05D007741 1.8e-104 382.9 237 79.3
QL09p015278 Quercus lobata HOM05D006286 ORTHO05D007741 3.1e-104 382.1 240 80.0
FAN10G3629 Fragaria x ananassa HOM05D006286 ORTHO05D007741 9.0e-104 380.6 237 78.5
FAN06G1618 Fragaria x ananassa HOM05D006286 ORTHO05D007741 1.5e-103 379.8 237 78.1
Prupe.2G287700 Prunus persica HOM05D006286 ORTHO05D007741 1.5e-103 379.8 237 79.3
TWI39G0272 Tripterygium wilfordii HOM05D006286 ORTHO05D007741 1.5e-103 379.8 237 80.6
FvH4_7g28750 Fragaria vesca HOM05D006286 ORTHO05D007741 2.6e-103 379.0 237 77.6
Dinv28504 Davidia involucrata HOM05D006286 ORTHO05D007741 1.0e-102 377.1 307 67.1
FAN01G0056 Fragaria x ananassa HOM05D006286 ORTHO05D007741 1.0e-102 377.1 236 78.0
Thecc.03G167300 Theobroma cacao HOM05D006286 ORTHO05D007741 1.0e-102 377.1 237 78.1
GSVIVG01018444001 Vitis vinifera HOM05D006286 ORTHO05D007741 1.7e-102 376.3 237 79.7
HanXRQChr14g0461801 Helianthus annuus HOM05D006286 ORTHO05D007741 1.4e-101 373.2 238 76.9
FAN06G4550 Fragaria x ananassa HOM05D006286 ORTHO05D007741 2.5e-101 372.5 237 76.8
Atru.chr1.554 Acer truncatum HOM05D006286 ORTHO05D007741 5.5e-101 371.3 237 76.8
Lsat_1_v5_gn_2_130220 Lactuca sativa HOM05D006286 ORTHO05D007741 5.5e-101 371.3 244 75.8
MD01G1193900 Malus domestica HOM05D006286 ORTHO05D007741 5.5e-101 371.3 238 78.2
Potri.015G135300 Populus trichocarpa HOM05D006286 ORTHO05D007741 5.5e-101 371.3 237 76.8
Sabra15G0147300 Salix brachista HOM05D006286 ORTHO05D007741 9.3e-101 370.5 237 77.6
Ciclev10005723m.g Citrus clementina HOM05D006286 ORTHO05D007741 2.7e-100 369.0 239 76.2
DCAR_018141 Daucus carota HOM05D006286 ORTHO05D007741 2.7e-100 369.0 237 76.8
Cc02_g03560 Coffea canephora HOM05D006286 ORTHO05D007741 3.5e-100 368.6 238 76.9
FAN03G0937 Fragaria x ananassa HOM05D006286 ORTHO05D007741 4.6e-100 368.2 241 75.9
Duzib084G1364 Durio zibethinus HOM05D006286 ORTHO05D007741 1.0e-99 367.1 237 76.8
Eucgr.A02845 Eucalyptus grandis HOM05D006286 ORTHO05D007741 1.8e-99 366.3 242 76.0
FAN03G0223 Fragaria x ananassa HOM05D006286 ORTHO05D007741 1.8e-99 366.3 241 75.5
CAN.G1097.8 Capsicum annuum HOM05D006286 ORTHO05D007741 3.9e-99 365.2 240 75.8
Cpa.g.sc4.205 Carica papaya HOM05D006286 ORTHO05D007741 3.9e-99 365.2 242 77.3
Lj5g0022226 Lotus japonicus HOM05D006286 ORTHO05D007741 8.7e-99 364.0 240 75.0
Oeu047963.2 Olea europaea HOM05D006286 ORTHO05D007741 1.1e-98 363.6 242 76.4
ClCG05G007720 Citrullus lanatus HOM05D006286 ORTHO05D007741 1.9e-98 362.8 238 76.5
SGA_v2.0_scaffold113G31783 Striga asiatica HOM05D006286 ORTHO05D007741 4.3e-98 361.7 239 76.2
MELO3C006861.2 Cucumis melo HOM05D006286 ORTHO05D007741 5.7e-98 361.3 238 75.2
Phvul.007G065700 Phaseolus vulgaris HOM05D006286 ORTHO05D007741 9.7e-98 360.5 240 74.6
Glyma.10G240400 Glycine max HOM05D006286 ORTHO05D007741 1.3e-97 360.1 240 75.0
Sopen03g002810 Solanum pennellii HOM05D006286 ORTHO05D007741 1.3e-97 360.1 237 73.4
Nitab4.5_0004911g0020 Nicotiana tabacum HOM05D006286 ORTHO05D007741 1.6e-97 359.8 233 73.8
Gohir.A09G179500 Gossypium hirsutum HOM05D006286 ORTHO05D007741 2.2e-97 359.4 234 74.4
Lalb_Chr06g0160901 Lupinus albus HOM05D006286 ORTHO05D007741 2.2e-97 359.4 221 78.3
Solyc03g006820.3 Solanum lycopersicum HOM05D006286 ORTHO05D007741 2.8e-97 359.0 237 73.0
CsaV3_3G016660 Cucumis sativus L. HOM05D006286 ORTHO05D007741 6.3e-97 357.8 239 74.9
Peaxi162Scf00192g00519 Petunia axillaris HOM05D006286 ORTHO05D007741 6.3e-97 357.8 238 74.4
Nn1g01303 Nelumbo nucifera HOM05D006286 ORTHO05D007741 8.2e-97 357.5 227 76.7
TAR629G0337 Trochodendron aralioides HOM05D006286 ORTHO05D007741 1.4e-96 356.7 227 77.1
TPR.G17410 Trifolium pratense HOM05D006286 ORTHO05D007741 1.8e-96 356.3 240 74.2
MSTRG.8433 Avicennia marina HOM05D006286 ORTHO05D007741 4.1e-96 355.1 287 65.2
Migut.F00396 Erythranthe guttata HOM05D006286 ORTHO05D007741 6.9e-96 354.4 241 73.0
Sed0023063 Sechium edule HOM05D006286 ORTHO05D007741 9.0e-96 354.0 235 75.3
Ca_10810_v3 Cicer arietinum L. HOM05D006286 ORTHO05D007741 1.2e-95 353.6 240 73.8
Gorai.006G196900 Gossypium raimondii HOM05D006286 ORTHO05D007741 1.2e-95 353.6 234 72.6
ECA238G1566 Erigeron canadensis HOM05D006286 ORTHO05D007741 3.4e-95 352.1 235 73.2
CANSAT25G1059 Cannabis sativa HOM05D006286 ORTHO05D007741 4.5e-95 351.7 237 75.5
PGSC0003DMG400024248 Solanum tuberosum HOM05D006286 ORTHO05D007741 7.7e-95 350.9 232 72.8
Gorai.013G064300 Gossypium raimondii HOM05D006286 ORTHO05D007741 1.1e-93 347.1 240 72.9
Psat6g201680 Pisum sativum HOM05D006286 ORTHO05D007741 1.4e-93 346.7 237 73.4
Gohir.D13G056900 Gossypium hirsutum HOM05D006286 ORTHO05D007741 1.9e-93 346.3 240 72.9
PSO782G2014 Papaver somniferum HOM05D006286 ORTHO05D007741 5.5e-93 344.7 235 73.6
Ah.13g067810 Amaranthus hybridus HOM05D006286 ORTHO05D007741 2.1e-92 342.8 218 76.6
PSO478G4977 Papaver somniferum HOM05D006286 ORTHO05D007741 2.1e-92 342.8 235 73.2
Gohir.A13G064700 Gossypium hirsutum HOM05D006286 ORTHO05D007741 7.9e-92 340.9 240 72.5
Lj8A31T63 Lonicera japonica HOM05D006286 ORTHO05D007741 1.4e-91 340.1 199 83.4
PSO782G5477 Papaver somniferum HOM05D006286 ORTHO05D007741 1.4e-91 340.1 235 72.8
VMungo0720G2540 Vigna mungo HOM05D006286 ORTHO05D007741 3.0e-91 339.0 228 74.1
Aqoxy7G00487 Aquilegia oxysepala HOM05D006286 ORTHO05D007741 6.7e-91 337.8 235 71.1
vmacro06741 Vaccinium macrocarpon HOM05D006286 ORTHO05D007741 5.7e-90 334.7 203 79.8
arahy.Tifrunner.gnm1.ann1.TWGE9F Arachis hypogaea HOM05D006286 ORTHO05D007741 1.1e-88 330.5 210 76.7
AUR62021266 Chenopodium quinoa HOM05D006286 ORTHO05D007741 1.1e-88 330.5 219 73.5
EL10Ac3g05740 Beta vulgaris HOM05D006286 ORTHO05D007741 1.4e-88 330.1 218 73.9
Sc13g0008250 Simmondsia chinensis HOM05D006286 ORTHO05D007741 1.8e-88 329.7 233 69.5
Nitab4.5_0000832g0010 Nicotiana tabacum HOM05D006286 ORTHO05D007741 2.6e-87 325.9 194 78.4
Aa31sc908G10 Aethionema arabicum HOM05D006286 ORTHO05D007741 3.4e-87 325.5 232 70.3
THA.LOC104825086 Tarenaya hassleriana HOM05D006286 ORTHO05D007741 1.9e-85 319.7 237 67.9
unitig_37.g11947 Utricularia gibba HOM05D006286 ORTHO05D007741 2.5e-85 319.3 231 67.5
Thhalv10014484m.g Eutrema salsugineum HOM05D006286 ORTHO05D007741 3.2e-85 318.9 233 66.5
Carub.0008s1192 Capsella rubella HOM05D006286 ORTHO05D007741 9.4e-85 317.4 228 69.3
PGR042G3452 Punica granatum HOM05D006286 ORTHO05D007741 3.6e-84 315.5 194 78.9
SalBow2G2245 Salvia bowleyana HOM05D006286 ORTHO05D007741 1.0e-83 313.9 240 67.5
Hund04686 Selenicereus undatus HOM05D006286 ORTHO05D007741 2.3e-83 312.8 227 70.0
AT5G51880 Arabidopsis thaliana HOM05D006286 ORTHO05D007741 3.9e-83 312.0 228 67.1
Sp6g14140 Schrenkiella parvula HOM05D006286 ORTHO05D007741 8.8e-83 310.8 221 67.9
BcaC04g20627 Brassica carinata HOM05D006286 ORTHO05D007741 1.5e-82 310.1 227 67.4
AL8G26180 Arabidopsis lyrata HOM05D006286 ORTHO05D007741 2.0e-82 309.7 225 68.0
C09p41380 Brassica napus HOM05D006286 ORTHO05D007741 3.3e-82 308.9 238 65.1
BolC9t57014H Brassica oleracea HOM05D006286 ORTHO05D007741 3.3e-82 308.9 238 65.1
AUR62016058 Chenopodium quinoa HOM05D006286 ORTHO05D007741 4.4e-82 308.5 194 76.3
ATR0757G128 Amborella trichopoda HOM05D006286 ORTHO05D007741 5.7e-82 308.1 232 64.2
A10p09720 Brassica napus HOM05D006286 ORTHO05D007741 9.7e-82 307.4 240 63.8
BraA10t43052Z Brassica rapa HOM05D006286 ORTHO05D007741 9.7e-82 307.4 240 63.8
BcaB08g35541 Brassica carinata HOM05D006286 ORTHO05D007741 8.2e-81 304.3 234 63.2
Os03g0119000 Oryza sativa ssp. japonica HOM05D006286 ORTHO05D007741 3.1e-80 302.4 216 67.6
HPP92_003528 Vanilla planifolia HOM05D006286 ORTHO05D007741 3.5e-79 298.9 235 63.8
COL.COLO4_14231 Corchorus olitorius HOM05D006286 ORTHO05D007741 4.7e-76 288.5 181 77.9
CDE12G0688 Ceratophyllum demersum HOM05D006286 ORTHO05D007741 5.7e-74 281.6 193 68.4
CiPaw.15G075500 Carya illinoinensis HOM05D006286 ORTHO05D007741 1.1e-72 277.3 205 69.8
CARHR264790 Cardamine hirsuta HOM05D006286 ORTHO05D007741 1.2e-71 273.9 203 66.0
MBI12_g36686_MAGBIO Magnolia biondii HOM05D006286 ORTHO05D007741 3.2e-69 265.8 193 68.9
Glyma.20G154300 Glycine max HOM05D006286 ORTHO05D007741 7.2e-69 264.6 198 69.7
Potri.012G133100 Populus trichocarpa HOM05D006286 ORTHO05D007741 3.4e-66 255.8 266 56.8
SMO139G0115 Selaginella moellendorffii HOM05D006286 ORTHO05D007741 1.9e-61 240.0 221 51.6
Mapoly0028s0137 Marchantia polymorpha HOM05D006286 ORTHO05D007741 2.5e-61 239.6 237 52.7
Gohir.D09G174800 Gossypium hirsutum HOM05D006286 ORTHO05D007741 1.4e-59 233.8 144 77.1
Actinidia03097 Actinidia chinensis HOM05D006286 ORTHO05D007741 2.2e-57 226.5 127 85.0
Medtr1g101840 Medicago truncatula HOM05D006286 ORTHO05D007741 1.2e-55 220.7 141 76.6
SEGI_34239 Sequoiadendron giganteum HOM05D006286 ORTHO05D007741 2.0e-55 219.9 178 60.7
Pp3c22_4190 Physcomitrium patens HOM05D006286 ORTHO05D007741 7.7e-55 218.0 239 50.2
AagrBONN_evm.TU.Sc2ySwM_368.2699 Anthoceros agrestis HOM05D006286 ORTHO05D007741 1.7e-54 216.9 221 50.2
Zm00001eb001360 Zea mays HOM05D006286 ORTHO05D007741 9.5e-53 211.1 191 55.5
Actinidia13543 Actinidia chinensis HOM05D006286 ORTHO05D007741 9.8e-34 147.9 92 79.3
SHI13825 Sapria himalayana HOM05D000350 ORTHO05D000228 1.1e-32 144.4 183 43.7
MCO04G355 Micromonas commoda HOM05D006286 ORTHO05D007741 3.1e-27 126.3 207 36.7
Cfa025685 Carpinus fangiana HOM05D006286 ORTHO05D007741 1.9e-24 117.1 254 32.7
PRCOL_00006636 Prasinoderma coloniale HOM05D006286 ORTHO05D007741 2.3e-22 110.2 183 38.8
Cre14.g619900 Chlamydomonas reinhardtii HOM05D006286 ORTHO05D007741 1.5e-21 107.5 168 38.7
RcHm_v2.0_Chr1g0376261 Rosa chinensis HOM05D006286 ORTHO05D007741 7.1e-16 88.6 49 79.6
FvH4_2g14060 Fragaria vesca HOM05D006286 ORTHO05D007741 5.1e-14 82.4 71 57.7
Ah.14g078790 Amaranthus hybridus HOM05D006286 ORTHO05D007741 8.7e-14 81.6 49 77.6
SEGI_15131 Sequoiadendron giganteum HOM05D006286 ORTHO05D007741 3.2e-08 63.2 34 82.4


User provided reference genes

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