Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046688 Camellia sinensis var. sinensis HOM05D000742 ORTHO05D000924 2.7e-73 278.5 133 100.0
CSS0016877 Camellia sinensis var. sinensis HOM05D000742 ORTHO05D000924 3.4e-68 261.5 134 94.8
CSS0008450 Camellia sinensis var. sinensis HOM05D000742 ORTHO05D000924 5.8e-68 260.8 133 94.0
CSS0034019 Camellia sinensis var. sinensis HOM05D000742 ORTHO05D000924 1.0e-67 260.0 133 93.2
CSS0023083 Camellia sinensis var. sinensis HOM05D000742 ORTHO05D000924 1.2e-23 113.6 61 88.5
Dinv01892 Davidia involucrata HOM05D000742 ORTHO05D000924 8.3e-22 107.5 108 51.9
vmacro08575 Vaccinium macrocarpon HOM05D000742 ORTHO05D000924 8.3e-22 107.5 65 78.5
Hma1.2p1_1538F.1_g289580 Hydrangea macrophylla HOM05D000742 ORTHO05D000924 9.1e-21 104.0 106 50.9
Actinidia38431 Actinidia chinensis HOM05D000742 ORTHO05D000924 1.6e-20 103.2 108 52.8
GSVIVG01011624001 Vitis vinifera HOM05D000742 ORTHO05D000924 7.7e-20 100.9 108 50.0
Thecc.02G307400 Theobroma cacao HOM05D000742 ORTHO05D000924 2.5e-18 95.9 65 69.2
ATR0021G009 Amborella trichopoda HOM05D000742 ORTHO05D000924 7.2e-18 94.4 109 47.7
Gohir.A05G308000 Gossypium hirsutum HOM05D000742 ORTHO05D000924 9.5e-18 94.0 110 46.4
Gohir.D05G308300 Gossypium hirsutum HOM05D000742 ORTHO05D000924 9.5e-18 94.0 110 46.4
Gorai.009G328600 Gossypium raimondii HOM05D000742 ORTHO05D000924 9.5e-18 94.0 110 46.4
Nn3g18426 Nelumbo nucifera HOM05D000742 ORTHO05D000924 9.5e-18 94.0 108 49.1
Haze_10845 Corylus avellana HOM05D000742 ORTHO05D000924 1.2e-17 93.6 106 49.1
QL03p038232 Quercus lobata HOM05D000742 ORTHO05D000924 4.7e-17 91.7 110 49.1
Medtr8g105910 Medicago truncatula HOM05D000742 ORTHO05D000924 6.1e-17 91.3 108 42.6
CANSAT78G2418 Cannabis sativa HOM05D000742 ORTHO05D000924 1.8e-16 89.7 104 45.2
Ca_17249_v3 Cicer arietinum L. HOM05D000742 ORTHO05D000924 1.8e-16 89.7 107 43.9
Psat4g004520 Pisum sativum HOM05D000742 ORTHO05D000924 3.0e-16 89.0 113 43.4
COL.COLO4_27609 Corchorus olitorius HOM05D000742 ORTHO05D000924 4.0e-16 88.6 65 63.1
TPR.G14280 Trifolium pratense HOM05D000742 ORTHO05D000924 2.0e-15 86.3 104 43.3
TAR371G0249 Trochodendron aralioides HOM05D000742 ORTHO05D000924 2.0e-15 86.3 108 46.3
Atru.chr11.818 Acer truncatum HOM05D000742 ORTHO05D000924 2.6e-15 85.9 58 70.7
Glyma.07G172700 Glycine max HOM05D000742 ORTHO05D000924 3.4e-15 85.5 63 61.9
Medtr1g032860 Medicago truncatula HOM05D000742 ORTHO05D000924 3.4e-15 85.5 63 61.9
TPR.G6493 Trifolium pratense HOM05D000742 ORTHO05D000924 3.4e-15 85.5 67 58.2
Migut.E00495 Erythranthe guttata HOM05D000742 ORTHO05D000924 4.4e-15 85.1 100 45.0
Lalb_Chr16g0387421 Lupinus albus HOM05D000742 ORTHO05D000924 7.5e-15 84.3 63 66.7
Lj2g0018340 Lotus japonicus HOM05D000742 ORTHO05D000924 1.3e-14 83.6 108 43.5
CiPaw.05G187700 Carya illinoinensis HOM05D000742 ORTHO05D000924 1.7e-14 83.2 65 63.1
arahy.Tifrunner.gnm1.ann1.0KE6L8 Arachis hypogaea HOM05D000742 ORTHO05D000924 2.2e-14 82.8 110 45.5
Ca_13004_v3 Cicer arietinum L. HOM05D000742 ORTHO05D000924 2.2e-14 82.8 65 58.5
Ca_13002_v3 Cicer arietinum L. HOM05D000742 ORTHO05D000924 2.8e-14 82.4 61 62.3
Sabra10G0076200 Salix brachista HOM05D000742 ORTHO05D000924 1.1e-13 80.5 75 58.7
Gorai.008G170600 Gossypium raimondii HOM05D000742 ORTHO05D000924 1.4e-13 80.1 65 60.0
Cc11_g06570 Coffea canephora HOM05D000742 ORTHO05D000924 2.4e-13 79.3 67 58.2
Gohir.D12G157800 Gossypium hirsutum HOM05D000742 ORTHO05D000924 2.4e-13 79.3 65 60.0
Lalb_Chr17g0338401 Lupinus albus HOM05D000742 ORTHO05D000924 2.4e-13 79.3 61 60.7
Psat6g051120 Pisum sativum HOM05D000742 ORTHO05D000924 2.4e-13 79.3 63 57.1
arahy.Tifrunner.gnm1.ann1.A7PU6D Arachis hypogaea HOM05D000742 ORTHO05D000924 3.2e-13 79.0 110 44.5
Phvul.003G016000 Phaseolus vulgaris HOM05D000742 ORTHO05D000924 3.2e-13 79.0 63 57.1
VMungo1215G2472 Vigna mungo HOM05D000742 ORTHO05D000924 3.2e-13 79.0 67 55.2
Prupe.1G335700 Prunus persica HOM05D000742 ORTHO05D000924 7.0e-13 77.8 111 43.2
Ciclev10015346m.g Citrus clementina HOM05D000742 ORTHO05D000924 3.5e-12 75.5 69 47.8
SHI04345 Sapria himalayana HOM05D000742 ORTHO05D000924 1.0e-11 73.9 69 55.1
SalBow2G1857 Salvia bowleyana HOM05D000742 ORTHO05D000924 3.9e-11 72.0 66 53.0
Potri.010G103600 Populus trichocarpa HOM05D000742 ORTHO05D000924 6.6e-11 71.2 48 68.8
Eucgr.G02082 Eucalyptus grandis HOM05D000742 ORTHO05D000924 8.6e-11 70.9 62 53.2
Os11g0549537 Oryza sativa ssp. japonica HOM05D000742 ORTHO05D000924 1.1e-10 70.5 71 49.3
FAN12G2312 Fragaria x ananassa HOM05D000742 ORTHO05D000924 9.5e-10 67.4 67 56.7
FAN17G2951 Fragaria x ananassa HOM05D000742 ORTHO05D000924 9.5e-10 67.4 67 56.7
TWI74G0296 Tripterygium wilfordii HOM05D000742 ORTHO05D000924 9.5e-10 67.4 64 48.4
Zm00001eb201610 Zea mays HOM05D000742 ORTHO05D000924 9.5e-10 67.4 47 59.6
FvH4_4g33260 Fragaria vesca HOM05D000742 ORTHO05D000924 1.6e-09 66.6 66 56.1
Lj4g0001118 Lotus japonicus HOM05D000742 ORTHO05D000924 2.8e-09 65.9 78 44.9
MD13G1017900 Malus domestica HOM05D000742 ORTHO05D000924 4.7e-09 65.1 99 41.4
Aqoxy3G04060 Aquilegia oxysepala HOM05D000742 ORTHO05D000924 8.0e-09 64.3 109 36.7
FAN22G1641 Fragaria x ananassa HOM05D000742 ORTHO05D000924 1.0e-08 63.9 63 57.1
Nn4g24464 Nelumbo nucifera HOM05D000742 ORTHO05D000924 1.4e-08 63.5 78 47.4
CSS0042127 Camellia sinensis var. sinensis HOM05D000742 ORTHO05D000924 3.1e-08 62.4 80 45.0
HanXRQChr17g0566011 Helianthus annuus HOM05D000742 ORTHO05D000924 3.1e-08 62.4 88 38.6
COL.COLO4_16965 Corchorus olitorius HOM05D000742 ORTHO05D000924 5.2e-08 61.6 38 76.3
MD16G1015900 Malus domestica HOM05D000742 ORTHO05D000924 5.2e-08 61.6 68 51.5
FAN08G0298 Fragaria x ananassa HOM05D000742 ORTHO05D000924 6.8e-08 61.2 49 63.3
BcaC08g46222 Brassica carinata HOM05D000742 ORTHO05D000924 8.9e-08 60.8 62 46.8
C06p42030 Brassica napus HOM05D003836 ORTHO05D004556 8.9e-08 60.8 62 46.8
HanXRQChr16g0527261 Helianthus annuus HOM05D000742 ORTHO05D000924 8.9e-08 60.8 69 46.4
Duzib205G0173 Durio zibethinus HOM05D000742 ORTHO05D000924 1.2e-07 60.5 38 71.1
THA.LOC104825573 Tarenaya hassleriana HOM05D000742 ORTHO05D000924 1.2e-07 60.5 40 70.0
Sabra01G0107200 Salix brachista HOM05D000742 ORTHO05D000924 1.5e-07 60.1 38 73.7
Eucgr.A02974 Eucalyptus grandis HOM05D000742 ORTHO05D000924 2.0e-07 59.7 39 74.4
Carub.0002s1444 Capsella rubella HOM05D000742 ORTHO05D000924 2.6e-07 59.3 37 75.7
FAN07G0499 Fragaria x ananassa HOM05D000742 ORTHO05D000924 2.6e-07 59.3 67 55.2
AT1G67950 Arabidopsis thaliana HOM05D000742 ORTHO05D000924 3.4e-07 58.9 37 73.0
A07p34480 Brassica napus HOM05D003836 ORTHO05D004556 3.4e-07 58.9 62 46.8
Dinv28988 Davidia involucrata HOM05D000742 ORTHO05D000924 3.4e-07 58.9 34 79.4
Gorai.003G184200 Gossypium raimondii HOM05D000742 ORTHO05D000924 3.4e-07 58.9 38 68.4
Sed0001432 Sechium edule HOM05D000742 ORTHO05D000924 3.4e-07 58.9 35 82.9
TAR636G2913 Trochodendron aralioides HOM05D000742 ORTHO05D000924 3.4e-07 58.9 34 79.4
ATR0829G069 Amborella trichopoda HOM05D000742 ORTHO05D000924 4.4e-07 58.5 81 42.0
BcaB03g15146 Brassica carinata HOM05D000742 ORTHO05D000924 4.4e-07 58.5 63 50.8
BcaC08g46217 Brassica carinata HOM05D000742 ORTHO05D000924 4.4e-07 58.5 63 50.8
Cpa.g.sc90.13 Carica papaya HOM05D000742 ORTHO05D000924 4.4e-07 58.5 37 70.3
Solyc08g076530.3 Solanum lycopersicum HOM05D000742 ORTHO05D000924 4.4e-07 58.5 34 79.4
Sopen08g025110 Solanum pennellii HOM05D000742 ORTHO05D000924 4.4e-07 58.5 34 79.4
PGSC0003DMG400014809 Solanum tuberosum HOM05D000742 ORTHO05D000924 4.4e-07 58.5 34 79.4
Aqoxy3G02213 Aquilegia oxysepala HOM05D000742 ORTHO05D000924 5.8e-07 58.2 42 64.3
Sed0012917 Sechium edule HOM05D000742 ORTHO05D000924 5.8e-07 58.2 34 76.5
Duzib084G0106 Durio zibethinus HOM05D000742 ORTHO05D000924 7.5e-07 57.8 37 67.6
Glyma.02G086600 Glycine max HOM05D000742 ORTHO05D000924 7.5e-07 57.8 37 70.3
Lj5g0000224 Lotus japonicus HOM05D000742 ORTHO05D000924 7.5e-07 57.8 34 73.5
PSO063G7077 Papaver somniferum HOM05D000742 ORTHO05D000924 7.5e-07 57.8 34 79.4
PSO782G0093 Papaver somniferum HOM05D000742 ORTHO05D000924 7.5e-07 57.8 34 79.4
Sed0003399 Sechium edule HOM05D000742 ORTHO05D000924 7.5e-07 57.8 35 80.0
AL2G26970 Arabidopsis lyrata HOM05D000742 ORTHO05D000924 9.8e-07 57.4 62 48.4
BolC6t39224H Brassica oleracea HOM05D000742 ORTHO05D000924 9.8e-07 57.4 60 46.7
ClCG07G005450 Citrullus lanatus HOM05D000742 ORTHO05D000924 9.8e-07 57.4 35 80.0
CsaV3_5G014500 Cucumis sativus L. HOM05D000742 ORTHO05D000924 9.8e-07 57.4 37 75.7
Dinv29150 Davidia involucrata HOM05D000329 ORTHO05D002813 9.8e-07 57.4 33 81.8
Thhalv10018968m.g Eutrema salsugineum HOM05D000742 ORTHO05D000924 9.8e-07 57.4 60 48.3
Nitab4.5_0000021g0620 Nicotiana tabacum HOM05D000742 ORTHO05D000924 9.8e-07 57.4 33 81.8
Atru.chr6.1630 Acer truncatum HOM05D000742 ORTHO05D000924 1.3e-06 57.0 78 41.0
ClCG10G001390 Citrullus lanatus HOM05D000742 ORTHO05D000924 1.3e-06 57.0 34 73.5
Cc08_g03430 Coffea canephora HOM05D000742 ORTHO05D000924 1.3e-06 57.0 34 73.5
Gorai.008G224700 Gossypium raimondii HOM05D000742 ORTHO05D000924 1.3e-06 57.0 51 52.9
Lj1C1033T24 Lonicera japonica HOM05D000742 ORTHO05D000924 1.3e-06 57.0 37 75.7
Nn3g19410 Nelumbo nucifera HOM05D000742 ORTHO05D000924 1.3e-06 57.0 34 79.4
Psat4g122600 Pisum sativum HOM05D000742 ORTHO05D000924 1.3e-06 57.0 34 73.5
Sp5g22970 Schrenkiella parvula HOM05D000742 ORTHO05D000924 1.3e-06 57.0 57 50.9
Thecc.03G307700 Theobroma cacao HOM05D000742 ORTHO05D000924 1.3e-06 57.0 37 64.9
MSTRG.1997 Avicennia marina HOM05D000742 ORTHO05D000924 1.7e-06 56.6 34 73.5
CiPaw.12G067100 Carya illinoinensis HOM05D000742 ORTHO05D000924 1.7e-06 56.6 80 42.5
Gohir.D12G209200 Gossypium hirsutum HOM05D000742 ORTHO05D000924 1.7e-06 56.6 74 41.9
Nitab4.5_0000529g0020 Nicotiana tabacum HOM05D000742 ORTHO05D000924 1.7e-06 56.6 34 79.4
QL12p001218 Quercus lobata HOM05D000742 ORTHO05D000924 1.7e-06 56.6 34 73.5
TWI15G1141 Tripterygium wilfordii HOM05D000742 ORTHO05D000924 1.7e-06 56.6 34 73.5
TAR375G0835 Trochodendron aralioides HOM05D000742 ORTHO05D000924 1.7e-06 56.6 34 73.5
Haze_08175 Corylus avellana HOM05D000742 ORTHO05D000924 2.2e-06 56.2 34 73.5
Hma1.2p1_0572F.1_g181190 Hydrangea macrophylla HOM05D000742 ORTHO05D000924 2.2e-06 56.2 37 70.3
Hma1.2p1_3278F.1_g334813 Hydrangea macrophylla HOM05D000742 ORTHO05D000924 2.2e-06 56.2 37 70.3
Lsat_1_v5_gn_4_23380 Lactuca sativa HOM05D000742 ORTHO05D000924 2.2e-06 56.2 91 37.4
Potri.001G138400 Populus trichocarpa HOM05D000742 ORTHO05D000924 2.2e-06 56.2 34 73.5
Solyc03g097110.4 Solanum lycopersicum HOM05D000742 ORTHO05D000924 2.2e-06 56.2 32 81.2
Sopen03g027850 Solanum pennellii HOM05D000742 ORTHO05D000924 2.2e-06 56.2 32 81.2
Hma1.2p1_1680F.1_g297110 Hydrangea macrophylla HOM05D000742 ORTHO05D000924 2.9e-06 55.8 33 78.8
PSO675G7805 Papaver somniferum HOM05D000742 ORTHO05D000924 2.9e-06 55.8 38 68.4
PSO717G0142 Papaver somniferum HOM05D000742 ORTHO05D000924 2.9e-06 55.8 38 68.4
Potri.003G095400 Populus trichocarpa HOM05D000742 ORTHO05D000924 2.9e-06 55.8 34 73.5
RcHm_v2.0_Chr7g0211571 Rosa chinensis HOM05D000742 ORTHO05D000924 2.9e-06 55.8 34 76.5
PGSC0003DMG400003159 Solanum tuberosum HOM05D000742 ORTHO05D000924 2.9e-06 55.8 32 81.2
HPP92_022108 Vanilla planifolia HOM05D000742 ORTHO05D000924 2.9e-06 55.8 37 70.3
HPP92_022133 Vanilla planifolia HOM05D000742 ORTHO05D000924 2.9e-06 55.8 37 70.3
CARHR060580 Cardamine hirsuta HOM05D000742 ORTHO05D000924 3.7e-06 55.5 36 72.2
CDE06G2438 Ceratophyllum demersum HOM05D000742 ORTHO05D000924 3.7e-06 55.5 34 73.5
Ca_22659_v3 Cicer arietinum L. HOM05D000742 ORTHO05D000924 3.7e-06 55.5 34 73.5
COL.COLO4_15225 Corchorus olitorius HOM05D000742 ORTHO05D000924 3.7e-06 55.5 34 73.5
Haze_00414 Corylus avellana HOM05D000742 ORTHO05D000924 3.7e-06 55.5 34 73.5
CsaV3_3G001470 Cucumis sativus L. HOM05D000742 ORTHO05D000924 3.7e-06 55.5 34 70.6
Glyma.09G206900 Glycine max HOM05D000742 ORTHO05D000924 3.7e-06 55.5 34 70.6
Gohir.A03G000044 Gossypium hirsutum HOM05D000742 ORTHO05D000924 3.7e-06 55.5 38 65.8
Lsat_1_v5_gn_3_68461 Lactuca sativa HOM05D000742 ORTHO05D000924 3.7e-06 55.5 34 73.5
Lsat_1_v5_gn_4_36960 Lactuca sativa HOM05D000742 ORTHO05D000924 3.7e-06 55.5 34 73.5
Lsat_1_v5_gn_5_106901 Lactuca sativa HOM05D000742 ORTHO05D000924 3.7e-06 55.5 34 73.5
Lsat_1_v5_gn_7_39100 Lactuca sativa HOM05D000742 ORTHO05D000924 3.7e-06 55.5 34 73.5
Lsat_1_v5_gn_9_47681 Lactuca sativa HOM05D000742 ORTHO05D000924 3.7e-06 55.5 34 73.5
Manes.17G010500 Manihot esculenta HOM05D000742 ORTHO05D000924 3.7e-06 55.5 35 68.6
Medtr8g066460 Medicago truncatula HOM05D000742 ORTHO05D000924 3.7e-06 55.5 34 70.6
TWI60G0527 Tripterygium wilfordii HOM05D000742 ORTHO05D000924 3.7e-06 55.5 34 70.6
TAR374G1002 Trochodendron aralioides HOM05D000742 ORTHO05D000924 3.7e-06 55.5 33 72.7
CSS0026657 Camellia sinensis var. sinensis HOM05D000742 ORTHO05D000924 4.9e-06 55.1 34 70.6
CANSAT21G2445 Cannabis sativa HOM05D000742 ORTHO05D000924 4.9e-06 55.1 33 72.7
Dinv25245 Davidia involucrata HOM05D000742 ORTHO05D000924 4.9e-06 55.1 34 73.5
Hma1.2p1_0572F.1_g181200 Hydrangea macrophylla HOM05D000742 ORTHO05D000924 4.9e-06 55.1 34 73.5
Nn1g01981 Nelumbo nucifera HOM05D000742 ORTHO05D000924 4.9e-06 55.1 34 67.6
Peaxi162Scf00170g00921 Petunia axillaris HOM05D000742 ORTHO05D000924 4.9e-06 55.1 34 76.5
PGR042G0913 Punica granatum HOM05D000742 ORTHO05D000924 4.9e-06 55.1 31 80.6
SGA_v2.0_scaffold20G09264 Striga asiatica HOM05D000742 ORTHO05D000924 4.9e-06 55.1 34 73.5
SGA_v2.0_scaffold6G03152 Striga asiatica HOM05D000742 ORTHO05D000924 4.9e-06 55.1 34 73.5
GSVIVG01024381001 Vitis vinifera HOM05D000742 ORTHO05D000924 4.9e-06 55.1 34 73.5
Actinidia34316 Actinidia chinensis HOM05D000742 ORTHO05D000924 6.4e-06 54.7 33 72.7
arahy.Tifrunner.gnm1.ann1.BGND9H Arachis hypogaea HOM05D000742 ORTHO05D000924 6.4e-06 54.7 37 62.2
arahy.Tifrunner.gnm1.ann1.YQJ5CI Arachis hypogaea HOM05D000742 ORTHO05D000924 6.4e-06 54.7 37 62.2
MSTRG.13746 Avicennia marina HOM05D000742 ORTHO05D000924 6.4e-06 54.7 34 70.6
Phvul.003G283600 Phaseolus vulgaris HOM05D000742 ORTHO05D000924 6.4e-06 54.7 39 61.5
Os03g0713600 Oryza sativa ssp. japonica HOM05D000742 ORTHO05D000924 8.3e-06 54.3 35 74.3
Os06g0112400 Oryza sativa ssp. japonica HOM05D000742 ORTHO05D000924 8.3e-06 54.3 39 64.1
Prupe.5G029900 Prunus persica HOM05D000742 ORTHO05D000924 8.3e-06 54.3 33 75.8
Sabra03G0064300 Salix brachista HOM05D000742 ORTHO05D000924 8.3e-06 54.3 34 70.6
TWI81G0414 Tripterygium wilfordii HOM05D000742 ORTHO05D000924 8.3e-06 54.3 34 67.6
HPP92_024771 Vanilla planifolia HOM05D000742 ORTHO05D000924 8.3e-06 54.3 34 73.5


User provided reference genes

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