Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 1.5e-107 392.9 198 100.0
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 1.8e-89 332.8 198 79.8
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 8.4e-87 323.9 197 77.7
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 1.4e-86 323.2 195 75.4
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 1.4e-86 323.2 196 81.6
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 1.9e-86 322.8 198 78.3
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 2.4e-86 322.4 196 75.5
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 5.4e-86 321.2 196 75.5
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 1.3e-84 316.6 196 78.1
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 2.3e-84 315.8 196 76.5
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 3.0e-84 315.5 198 76.3
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 3.9e-84 315.1 196 79.1
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 3.9e-84 315.1 196 75.0
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 5.1e-84 314.7 198 73.2
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 5.1e-84 314.7 197 79.7
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 5.1e-84 314.7 195 74.9
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 6.6e-84 314.3 195 74.9
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 8.7e-84 313.9 197 75.1
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 8.7e-84 313.9 195 74.4
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 1.5e-83 313.2 198 74.7
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 3.3e-83 312.0 198 75.3
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 3.3e-83 312.0 198 74.7
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 2.1e-82 309.3 196 74.5
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 2.1e-82 309.3 197 74.6
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 2.8e-82 308.9 198 72.2
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 3.6e-82 308.5 198 73.2
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 3.6e-82 308.5 198 73.2
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 6.2e-82 307.8 198 75.8
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 6.2e-82 307.8 197 76.1
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 8.1e-82 307.4 198 73.7
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 1.4e-81 306.6 198 74.7
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 2.4e-81 305.8 198 72.7
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 3.1e-81 305.4 196 74.0
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 3.1e-81 305.4 197 74.6
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 4.0e-81 305.1 198 73.2
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 5.3e-81 304.7 196 72.4
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 5.3e-81 304.7 198 73.2
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 1.2e-80 303.5 195 73.8
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 2.0e-80 302.8 198 73.7
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 2.0e-80 302.8 198 74.2
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 2.6e-80 302.4 198 74.2
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 2.6e-80 302.4 198 74.2
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 3.4e-80 302.0 198 71.7
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 3.4e-80 302.0 198 73.2
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 7.6e-80 300.8 198 73.7
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 9.9e-80 300.4 198 74.7
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 9.9e-80 300.4 198 71.7
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 1.3e-79 300.1 198 73.7
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 1.3e-79 300.1 198 73.7
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 1.7e-79 299.7 197 73.1
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 2.9e-79 298.9 198 73.7
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 3.8e-79 298.5 196 72.4
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 4.9e-79 298.1 197 70.6
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 6.4e-79 297.7 198 73.2
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 1.1e-78 297.0 198 74.2
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 1.4e-78 296.6 189 74.6
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 1.4e-78 296.6 197 73.6
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 2.4e-78 295.8 183 76.5
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 3.2e-78 295.4 196 67.9
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 4.2e-78 295.0 198 71.2
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 4.2e-78 295.0 198 72.2
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 5.4e-78 294.7 198 73.7
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 7.1e-78 294.3 198 70.7
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 9.3e-78 293.9 183 74.3
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 1.6e-77 293.1 198 71.2
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 1.6e-77 293.1 198 69.7
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 2.7e-77 292.4 196 70.9
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 2.7e-77 292.4 198 70.7
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 2.7e-77 292.4 198 70.7
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 2.7e-77 292.4 198 71.2
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 3.5e-77 292.0 187 75.9
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 6.0e-77 291.2 198 70.7
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 1.0e-76 290.4 198 69.2
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 1.0e-76 290.4 197 70.1
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 6.6e-76 287.7 183 73.2
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 6.6e-76 287.7 186 74.2
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 6.6e-76 287.7 198 66.7
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 1.1e-75 287.0 197 69.0
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 1.1e-75 287.0 196 67.9
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.9e-75 286.2 191 72.3
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 1.9e-75 286.2 198 67.2
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 2.5e-75 285.8 198 71.2
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 2.5e-75 285.8 198 69.7
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 3.3e-75 285.4 199 69.8
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 4.3e-75 285.0 198 70.2
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 5.6e-75 284.6 198 69.2
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 5.6e-75 284.6 198 67.7
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 7.3e-75 284.3 198 68.7
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 9.6e-75 283.9 198 69.7
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 1.6e-74 283.1 197 68.0
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 1.6e-74 283.1 198 68.7
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 2.1e-74 282.7 198 68.2
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 2.1e-74 282.7 191 68.6
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 2.8e-74 282.3 197 68.0
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 2.8e-74 282.3 198 68.2
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 4.8e-74 281.6 192 72.4
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 6.2e-74 281.2 198 66.2
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 6.2e-74 281.2 199 67.8
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 8.1e-74 280.8 184 70.1
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 1.1e-73 280.4 198 69.2
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 1.1e-73 280.4 197 67.5
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 2.4e-73 279.3 198 69.2
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 4.0e-73 278.5 197 66.0
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 5.3e-73 278.1 184 69.6
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 5.3e-73 278.1 184 69.6
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 5.3e-73 278.1 198 69.2
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 1.2e-72 276.9 186 71.5
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 2.0e-72 276.2 191 71.2
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 1.3e-71 273.5 199 67.8
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 1.3e-71 273.5 186 69.9
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 1.6e-69 266.5 198 66.2
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 7.9e-69 264.2 181 70.7
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 5.1e-68 261.5 198 64.1
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 1.1e-67 260.4 180 69.4
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 1.1e-67 260.4 198 62.6
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 7.4e-67 257.7 178 68.0
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 8.1e-66 254.2 187 62.0
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 2.6e-64 249.2 197 63.5
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 5.8e-64 248.1 196 62.2
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 9.3e-62 240.7 170 69.4
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.6e-61 240.0 142 78.2
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 3.3e-59 232.3 144 70.1
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 1.3e-58 230.3 144 72.2
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 2.1e-58 229.6 169 64.5
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 4.1e-57 225.3 197 58.4
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 6.5e-55 218.0 156 67.9
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 8.4e-55 217.6 144 65.3
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 4.2e-54 215.3 192 52.6
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 7.2e-54 214.5 187 56.7
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 8.7e-52 207.6 156 61.5
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 1.6e-50 203.4 112 79.5
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 9.0e-49 197.6 198 49.5
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 2.5e-43 179.5 98 79.6
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 5.7e-43 178.3 126 69.0
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 3.7e-42 175.6 198 47.0
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 1.4e-41 173.7 198 51.5
MCO05G386 Micromonas commoda HOM05D004717 ORTHO05D005636 5.1e-36 155.2 181 43.1
PRCOL_00002165 Prasinoderma coloniale HOM05D004717 ORTHO05D005636 3.1e-33 146.0 181 46.4
Haze_27496 Corylus avellana HOM05D004717 ORTHO05D005636 1.0e-28 131.0 184 38.6
SEGI_39005 Sequoiadendron giganteum HOM05D004717 ORTHO05D005636 3.5e-24 115.9 74 64.9
AagrBONN_evm.TU.Sc2ySwM_344.2327 Anthoceros agrestis HOM05D004717 ORTHO05D005636 5.9e-24 115.2 105 55.2
ECA247G3377 Erigeron canadensis HOM05D004717 ORTHO05D005636 5.9e-24 115.2 98 59.2
Cfa021666 Carpinus fangiana HOM05D004717 ORTHO05D005636 3.8e-23 112.5 186 36.0
AagrBONN_evm.TU.Sc2ySwM_117.4144 Anthoceros agrestis HOM05D004717 ORTHO05D005636 6.5e-23 111.7 104 55.8
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 8.5e-23 111.3 118 50.0
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 8.0e-21 104.8 120 47.5
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 8.8e-20 101.3 194 38.1
Eucgr.D01405 Eucalyptus grandis HOM05D004717 ORTHO05D005636 2.0e-19 100.1 109 50.5
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 8.3e-18 94.7 71 60.6
RhsimUnG0160700 Rhododendron simsii HOM05D004717 ORTHO05D005636 1.3e-15 87.4 58 70.7
Actinidia11311 Actinidia chinensis HOM05D004717 ORTHO05D005636 5.0e-07 58.9 41 73.2


User provided reference genes

Program Settings