Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046670 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 6.2e-67 257.3 128 100.0
CSS0034614 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 3.1e-58 228.4 121 91.7
CSS0046173 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 5.8e-57 224.2 111 99.1
TAR381G0484 Trochodendron aralioides HOM05D005344 ORTHO05D006444 5.8e-57 224.2 121 91.7
Nn6g32300 Nelumbo nucifera HOM05D005344 ORTHO05D006444 1.0e-56 223.4 121 90.1
Gorai.009G225000 Gossypium raimondii HOM05D005344 ORTHO05D006444 1.7e-56 222.6 120 88.3
Gohir.D05G218100 Gossypium hirsutum HOM05D005344 ORTHO05D006444 2.2e-56 222.2 121 88.4
Rhsim07G0245900 Rhododendron simsii HOM05D005344 ORTHO05D006444 2.2e-56 222.2 119 89.1
DCAR_013854 Daucus carota HOM05D005344 ORTHO05D006444 2.9e-56 221.9 120 88.3
Gohir.A05G214800 Gossypium hirsutum HOM05D005344 ORTHO05D006444 4.9e-56 221.1 121 87.6
Duzib093G0333 Durio zibethinus HOM05D005344 ORTHO05D006444 6.5e-56 220.7 121 88.4
vmacro04337 Vaccinium macrocarpon HOM05D005344 ORTHO05D006444 6.5e-56 220.7 119 89.1
Actinidia15404 Actinidia chinensis HOM05D005344 ORTHO05D006444 8.4e-56 220.3 125 84.8
Potri.004G228566 Populus trichocarpa HOM05D005344 ORTHO05D006444 1.1e-55 219.9 121 88.4
GSVIVG01009861001 Vitis vinifera HOM05D005344 ORTHO05D006444 1.1e-55 219.9 121 88.4
Dinv39499 Davidia involucrata HOM05D005344 ORTHO05D006444 1.4e-55 219.5 121 89.3
Potri.012G106900 Populus trichocarpa HOM05D005344 ORTHO05D006444 1.9e-55 219.2 120 87.5
QL02p011006 Quercus lobata HOM05D005344 ORTHO05D006444 1.9e-55 219.2 121 87.6
CiPaw.08G064300 Carya illinoinensis HOM05D005344 ORTHO05D006444 3.2e-55 218.4 121 87.6
PGR083G0019 Punica granatum HOM05D005344 ORTHO05D006444 7.1e-55 217.2 121 86.8
Sabra01G0173600 Salix brachista HOM05D005344 ORTHO05D006444 7.1e-55 217.2 119 87.4
Cpa.g.sc116.53 Carica papaya HOM05D005344 ORTHO05D006444 9.3e-55 216.9 121 86.8
QL03p018250 Quercus lobata HOM05D005344 ORTHO05D006444 1.6e-54 216.1 121 86.0
Eucgr.F01631 Eucalyptus grandis HOM05D005344 ORTHO05D006444 2.1e-54 215.7 121 86.8
Thecc.08G040900 Theobroma cacao HOM05D005344 ORTHO05D006444 2.1e-54 215.7 121 86.0
COL.COLO4_32025 Corchorus olitorius HOM05D005344 ORTHO05D006444 3.5e-54 214.9 121 85.1
Haze_22604 Corylus avellana HOM05D005344 ORTHO05D006444 3.5e-54 214.9 119 86.6
Manes.18G015800 Manihot esculenta HOM05D005344 ORTHO05D006444 4.6e-54 214.5 121 86.8
PGR102G3231 Punica granatum HOM05D005344 ORTHO05D006444 7.9e-54 213.8 121 85.1
Cc10_g01930 Coffea canephora HOM05D005344 ORTHO05D006444 1.0e-53 213.4 119 87.4
Lsat_1_v5_gn_7_29421 Lactuca sativa HOM05D005344 ORTHO05D006444 1.0e-53 213.4 121 85.1
Atru.chr12.1135 Acer truncatum HOM05D005344 ORTHO05D006444 1.8e-53 212.6 121 86.0
Cfa013923 Carpinus fangiana HOM05D005344 ORTHO05D006444 2.3e-53 212.2 120 85.0
HanXRQChr15g0480961 Helianthus annuus HOM05D005344 ORTHO05D006444 2.3e-53 212.2 121 85.1
TWI31G0971 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 2.3e-53 212.2 121 85.1
TWI75G1031 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 2.3e-53 212.2 121 86.0
ECA236G2959 Erigeron canadensis HOM05D005344 ORTHO05D006444 3.0e-53 211.8 121 83.5
CANSAT56G2098 Cannabis sativa HOM05D005344 ORTHO05D006444 5.1e-53 211.1 121 84.3
CANSAT56G2754 Cannabis sativa HOM05D005344 ORTHO05D006444 6.7e-53 210.7 121 85.1
Oeu024518.1 Olea europaea HOM05D005344 ORTHO05D006444 8.7e-53 210.3 120 83.3
HanXRQChr04g0119171 Helianthus annuus HOM05D005344 ORTHO05D006444 1.1e-52 209.9 121 84.3
ClCG05G018520 Citrullus lanatus HOM05D005344 ORTHO05D006444 1.9e-52 209.1 120 83.3
Sed0018322 Sechium edule HOM05D005344 ORTHO05D006444 1.9e-52 209.1 121 82.6
Oeu031192.1 Olea europaea HOM05D005344 ORTHO05D006444 2.5e-52 208.8 120 82.5
CsaV3_3G045650 Cucumis sativus L. HOM05D005344 ORTHO05D006444 3.3e-52 208.4 121 83.5
arahy.Tifrunner.gnm1.ann1.Y8FRL8 Arachis hypogaea HOM05D005344 ORTHO05D006444 4.3e-52 208.0 121 81.0
A04p12340 Brassica napus HOM05D005344 ORTHO05D006444 7.4e-52 207.2 121 82.6
C04p46010 Brassica napus HOM05D005344 ORTHO05D006444 7.4e-52 207.2 121 82.6
FAN15G2308 Fragaria x ananassa HOM05D005344 ORTHO05D006444 9.6e-52 206.8 121 81.8
FAN20G2570 Fragaria x ananassa HOM05D005344 ORTHO05D006444 1.3e-51 206.5 120 80.8
Prupe.1G368800 Prunus persica HOM05D005344 ORTHO05D006444 1.3e-51 206.5 121 82.6
Prupe.1G182400 Prunus persica HOM05D005344 ORTHO05D006444 1.6e-51 206.1 121 81.8
TAR625G0974 Trochodendron aralioides HOM05D005344 ORTHO05D006444 1.6e-51 206.1 121 82.6
Thhalv10027992m.g Eutrema salsugineum HOM05D005344 ORTHO05D006444 2.1e-51 205.7 121 84.3
RcHm_v2.0_Chr6g0302491 Rosa chinensis HOM05D005344 ORTHO05D006444 2.1e-51 205.7 121 81.0
arahy.Tifrunner.gnm1.ann1.0YI8WX Arachis hypogaea HOM05D005344 ORTHO05D006444 2.8e-51 205.3 119 80.7
BcaB06g27347 Brassica carinata HOM05D005344 ORTHO05D006444 3.7e-51 204.9 121 82.6
BolC4t26183H Brassica oleracea HOM05D005344 ORTHO05D006444 3.7e-51 204.9 121 82.6
BraA04t16898Z Brassica rapa HOM05D005344 ORTHO05D006444 3.7e-51 204.9 121 82.6
SalBow8G2912 Salvia bowleyana HOM05D005344 ORTHO05D006444 3.7e-51 204.9 122 80.3
Sp7g02390 Schrenkiella parvula HOM05D005344 ORTHO05D006444 3.7e-51 204.9 121 81.8
Aa31LG9G16480 Aethionema arabicum HOM05D005344 ORTHO05D006444 1.1e-50 203.4 121 80.2
AT5G39600 Arabidopsis thaliana HOM05D005344 ORTHO05D006444 1.1e-50 203.4 121 81.8
FvH4_2g38800 Fragaria vesca HOM05D005344 ORTHO05D006444 1.1e-50 203.4 121 80.2
Medtr3g113260 Medicago truncatula HOM05D005344 ORTHO05D006444 1.1e-50 203.4 121 80.2
arahy.Tifrunner.gnm1.ann1.2J2T1L Arachis hypogaea HOM05D005344 ORTHO05D006444 1.4e-50 203.0 119 80.7
Carub.0007s3634 Capsella rubella HOM05D005344 ORTHO05D006444 1.4e-50 203.0 121 81.8
CDE05G1229 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 1.8e-50 202.6 119 81.5
CDE05G1331 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 1.8e-50 202.6 119 81.5
MD02G1241500 Malus domestica HOM05D005344 ORTHO05D006444 1.8e-50 202.6 119 80.7
TAR625G1223 Trochodendron aralioides HOM05D005344 ORTHO05D006444 1.8e-50 202.6 117 83.8
CAN.G1271.12 Capsicum annuum HOM05D005344 ORTHO05D006444 2.4e-50 202.2 120 80.0
PSO541G4852 Papaver somniferum HOM05D005344 ORTHO05D006444 2.4e-50 202.2 121 81.8
PSO675G5369 Papaver somniferum HOM05D005344 ORTHO05D006444 2.4e-50 202.2 121 81.8
Psat5g014400 Pisum sativum HOM05D005344 ORTHO05D006444 2.4e-50 202.2 121 80.2
PGSC0003DMG400003723 Solanum tuberosum HOM05D005344 ORTHO05D006444 2.4e-50 202.2 119 80.7
Ca_16814_v3 Cicer arietinum L. HOM05D005344 ORTHO05D006444 3.1e-50 201.8 119 82.4
Migut.N03145 Erythranthe guttata HOM05D005344 ORTHO05D006444 3.1e-50 201.8 119 80.7
Nitab4.5_0001988g0010 Nicotiana tabacum HOM05D005344 ORTHO05D006444 3.1e-50 201.8 119 79.8
MD07G1075400 Malus domestica HOM05D005344 ORTHO05D006444 4.1e-50 201.4 119 80.7
TPR.G38895 Trifolium pratense HOM05D005344 ORTHO05D006444 4.1e-50 201.4 121 78.5
MELO3C003771.2 Cucumis melo HOM05D005344 ORTHO05D006444 5.3e-50 201.1 120 80.8
Lj1g0020845 Lotus japonicus HOM05D005344 ORTHO05D006444 5.3e-50 201.1 121 81.8
Peaxi162Scf00287g01714 Petunia axillaris HOM05D005344 ORTHO05D006444 5.3e-50 201.1 119 80.7
Solyc04g081220.3 Solanum lycopersicum HOM05D005344 ORTHO05D006444 5.3e-50 201.1 119 79.8
Sopen04g034830 Solanum pennellii HOM05D005344 ORTHO05D006444 5.3e-50 201.1 119 79.8
CARHR262690 Cardamine hirsuta HOM05D005344 ORTHO05D006444 6.9e-50 200.7 121 81.0
Medtr1g013440 Medicago truncatula HOM05D005344 ORTHO05D006444 6.9e-50 200.7 121 79.3
arahy.Tifrunner.gnm1.ann1.NGB00B Arachis hypogaea HOM05D005344 ORTHO05D006444 9.0e-50 200.3 122 77.9
Nitab4.5_0005425g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 1.2e-49 199.9 121 76.9
Aqoxy6G02944 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 2.6e-49 198.7 120 80.0
Nitab4.5_0006992g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 2.6e-49 198.7 119 79.0
Lalb_Chr11g0061991 Lupinus albus HOM05D005344 ORTHO05D006444 4.5e-49 198.0 121 80.2
SGA_v2.0_scaffold47G17494 Striga asiatica HOM05D005344 ORTHO05D006444 4.5e-49 198.0 119 79.0
AL7G50710 Arabidopsis lyrata HOM05D005344 ORTHO05D006444 5.8e-49 197.6 121 79.3
TPR.G5807 Trifolium pratense HOM05D005344 ORTHO05D006444 5.8e-49 197.6 122 79.5
MSTRG.24255 Avicennia marina HOM05D005344 ORTHO05D006444 1.0e-48 196.8 119 79.8
Sc02g0008440 Simmondsia chinensis HOM05D005344 ORTHO05D006444 1.0e-48 196.8 121 76.9
Ciclev10002838m.g Citrus clementina HOM05D005344 ORTHO05D006444 1.4e-47 193.0 122 75.4
EL10Ac1g02258 Beta vulgaris HOM05D005344 ORTHO05D006444 1.9e-47 192.6 121 76.0
Aqoxy6G02319 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 3.2e-47 191.8 121 76.9
Glyma.06G025600 Glycine max HOM05D005344 ORTHO05D006444 3.2e-47 191.8 121 76.0
Phvul.009G015400 Phaseolus vulgaris HOM05D005344 ORTHO05D006444 4.2e-47 191.4 121 77.7
AUR62035436 Chenopodium quinoa HOM05D005344 ORTHO05D006444 5.5e-47 191.0 120 75.0
AUR62035723 Chenopodium quinoa HOM05D005344 ORTHO05D006444 7.1e-47 190.7 120 75.0
HPP92_014936 Vanilla planifolia HOM05D005344 ORTHO05D006444 1.6e-46 189.5 119 78.2
VMungo1309G2030 Vigna mungo HOM05D005344 ORTHO05D006444 2.7e-46 188.7 119 77.3
SHI08085 Sapria himalayana HOM05D005344 ORTHO05D006444 6.1e-46 187.6 124 72.6
unitig_899.g15276 Utricularia gibba HOM05D005344 ORTHO05D006444 1.0e-45 186.8 120 75.0
FAN26G0652 Fragaria x ananassa HOM05D005344 ORTHO05D006444 2.3e-45 185.7 121 72.7
Glyma.04G025800 Glycine max HOM05D005344 ORTHO05D006444 8.7e-45 183.7 121 73.6
Manes.09G054100 Manihot esculenta HOM05D005344 ORTHO05D006444 5.7e-44 181.0 119 72.3
FvH4_1g25620 Fragaria vesca HOM05D005344 ORTHO05D006444 7.4e-44 180.6 121 72.7
FAN19G0275 Fragaria x ananassa HOM05D005344 ORTHO05D006444 9.7e-44 180.3 121 71.9
FAN23G0736 Fragaria x ananassa HOM05D005344 ORTHO05D006444 4.1e-42 174.9 115 73.0
Atru.chr4.1572 Acer truncatum HOM05D005344 ORTHO05D006444 3.4e-41 171.8 116 75.9
MBI05_g26505_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 7.7e-41 170.6 99 82.8
arahy.Tifrunner.gnm1.ann1.3U1GZ3 Arachis hypogaea HOM05D005344 ORTHO05D006444 1.1e-39 166.8 99 78.8
ATR0665G498 Amborella trichopoda HOM05D005344 ORTHO05D006444 1.4e-39 166.4 114 71.9
arahy.Tifrunner.gnm1.ann1.IGJ8TG Arachis hypogaea HOM05D005344 ORTHO05D006444 7.2e-39 164.1 97 79.4
MSTRG.22330 Avicennia marina HOM05D005344 ORTHO05D006444 5.7e-36 154.5 104 74.0
Gorai.005G111500 Gossypium raimondii HOM05D005344 ORTHO05D006444 8.2e-35 150.6 94 77.7
Pp3c9_11020 Physcomitrium patens HOM05D005344 ORTHO05D006444 1.1e-34 150.2 111 63.1
arahy.Tifrunner.gnm1.ann1.Y1NSFR Arachis hypogaea HOM05D005344 ORTHO05D006444 2.4e-34 149.1 88 79.5
Mapoly0151s0020 Marchantia polymorpha HOM05D005344 ORTHO05D006444 4.1e-34 148.3 114 59.6
arahy.Tifrunner.gnm1.ann1.2QY3VR Arachis hypogaea HOM05D005344 ORTHO05D006444 9.1e-34 147.1 89 77.5
arahy.Tifrunner.gnm1.ann1.ZTTZ43 Arachis hypogaea HOM05D005344 ORTHO05D006444 1.2e-33 146.7 88 78.4
arahy.Tifrunner.gnm1.ann1.H9RICG Arachis hypogaea HOM05D005344 ORTHO05D006444 2.0e-33 146.0 87 78.2
Os02g0282100 Oryza sativa ssp. japonica HOM05D005344 ORTHO05D006444 2.7e-30 135.6 134 53.0
ATR0605G109 Amborella trichopoda HOM05D005344 ORTHO05D006444 3.0e-29 132.1 92 73.9
AagrBONN_evm.TU.Sc2ySwM_117.1156 Anthoceros agrestis HOM05D005344 ORTHO05D006444 3.3e-28 128.6 99 56.6
Hund00462 Selenicereus undatus HOM05D005344 ORTHO05D006444 7.4e-28 127.5 113 54.0
Zm00001eb237200 Zea mays HOM05D005344 ORTHO05D006444 6.3e-27 124.4 132 50.0
MBI07_g11722_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 1.1e-26 123.6 79 74.7
arahy.Tifrunner.gnm1.ann1.3DP3ZG Arachis hypogaea HOM05D005344 ORTHO05D006444 2.1e-14 82.8 51 78.4
CSS0040415 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 6.1e-14 81.3 40 92.5
CSS0035037 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 2.8e-11 72.4 39 92.3
CBR_g48744 Chara braunii HOM05D005344 ORTHO05D006444 4.2e-07 58.5 54 48.1


User provided reference genes

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