Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046666 Camellia sinensis var. sinensis HOM05D007091 ORTHO05D008768 1.2e-144 516.5 263 100.0
vmacro18668 Vaccinium macrocarpon HOM05D007091 ORTHO05D008768 7.4e-107 391.0 256 80.1
Actinidia34668 Actinidia chinensis HOM05D007091 ORTHO05D008768 1.3e-98 363.6 254 77.2
Dinv32110 Davidia involucrata HOM05D007091 ORTHO05D008768 4.2e-94 348.6 262 73.7
Dinv01447 Davidia involucrata HOM05D007091 ORTHO05D008768 5.5e-94 348.2 242 76.4
QL09p036643 Quercus lobata HOM05D007091 ORTHO05D008768 2.0e-91 339.7 245 73.5
Hma1.2p1_0844F.1_g227450 Hydrangea macrophylla HOM05D007091 ORTHO05D008768 7.0e-89 331.3 247 73.3
Nn4g24542 Nelumbo nucifera HOM05D007091 ORTHO05D008768 9.1e-89 330.9 256 69.5
Atru.chr9.1636 Acer truncatum HOM05D007091 ORTHO05D008768 2.6e-88 329.3 251 70.5
TAR629G3120 Trochodendron aralioides HOM05D007091 ORTHO05D008768 1.3e-87 327.0 267 67.0
Cfa020656 Carpinus fangiana HOM05D007091 ORTHO05D008768 1.1e-86 323.9 245 69.8
RcHm_v2.0_Chr7g0177781 Rosa chinensis HOM05D007091 ORTHO05D008768 1.1e-86 323.9 241 70.5
Aqoxy3G04057 Aquilegia oxysepala HOM05D007091 ORTHO05D008768 1.5e-86 323.6 259 68.0
CiPaw.15G149800 Carya illinoinensis HOM05D007091 ORTHO05D008768 5.5e-86 321.6 259 68.7
FAN13G0023 Fragaria x ananassa HOM05D007091 ORTHO05D008768 7.2e-86 321.2 242 69.0
MD06G1234100 Malus domestica HOM05D007091 ORTHO05D008768 9.4e-86 320.9 259 68.3
FvH4_5g17800 Fragaria vesca HOM05D007091 ORTHO05D008768 1.6e-85 320.1 242 69.4
Ciclev10026363m.g Citrus clementina HOM05D007091 ORTHO05D008768 4.7e-85 318.5 252 67.9
Prupe.5G238600 Prunus persica HOM05D007091 ORTHO05D008768 1.4e-84 317.0 258 66.7
Lalb_Chr22g0353631 Lupinus albus HOM05D007091 ORTHO05D008768 1.8e-84 316.6 263 65.4
TWI15G0826 Tripterygium wilfordii HOM05D007091 ORTHO05D008768 3.0e-84 315.8 265 66.4
Potri.012G041400 Populus trichocarpa HOM05D007091 ORTHO05D008768 1.2e-83 313.9 245 70.6
Eucgr.H00567 Eucalyptus grandis HOM05D007091 ORTHO05D008768 4.4e-83 312.0 250 67.2
GSVIVG01000383001 Vitis vinifera HOM05D007091 ORTHO05D008768 6.3e-82 308.1 243 68.7
Sabra12G0028500 Salix brachista HOM05D007091 ORTHO05D008768 5.3e-81 305.1 243 69.5
arahy.Tifrunner.gnm1.ann1.0PBM2M Arachis hypogaea HOM05D007091 ORTHO05D008768 3.5e-80 302.4 247 65.2
Cc04_g09250 Coffea canephora HOM05D007091 ORTHO05D008768 1.7e-79 300.1 256 65.2
TPR.G31708 Trifolium pratense HOM05D007091 ORTHO05D008768 1.5e-78 297.0 251 64.9
Sopen06g028870 Solanum pennellii HOM05D007091 ORTHO05D008768 1.9e-78 296.6 246 64.2
CDE07G0316 Ceratophyllum demersum HOM05D007091 ORTHO05D008768 3.2e-78 295.8 240 64.6
arahy.Tifrunner.gnm1.ann1.M1K315 Arachis hypogaea HOM05D007091 ORTHO05D008768 9.4e-78 294.3 237 64.6
Ca_20293_v3 Cicer arietinum L. HOM05D007091 ORTHO05D008768 9.4e-78 294.3 248 64.1
Duzib264G1108 Durio zibethinus HOM05D007091 ORTHO05D008768 1.6e-77 293.5 251 65.7
Solyc06g072500.2 Solanum lycopersicum HOM05D007091 ORTHO05D008768 1.6e-77 293.5 246 63.8
Glyma.09G170700 Glycine max HOM05D007091 ORTHO05D008768 2.1e-77 293.1 247 63.6
DCAR_004559 Daucus carota HOM05D007091 ORTHO05D009263 8.0e-77 291.2 257 62.6
Gohir.D11G227400 Gossypium hirsutum HOM05D007091 ORTHO05D008768 1.0e-76 290.8 251 63.7
MD14G1240800 Malus domestica HOM05D007091 ORTHO05D008768 3.0e-76 289.3 223 70.4
Peaxi162Scf01064g00022 Petunia axillaris HOM05D007091 ORTHO05D008768 3.0e-76 289.3 248 64.1
Gorai.007G246600 Gossypium raimondii HOM05D007091 ORTHO05D008768 4.0e-76 288.9 251 62.9
CAN.G65.99 Capsicum annuum HOM05D007091 ORTHO05D008768 8.8e-76 287.7 259 64.5
VMungo0464G0064 Vigna mungo HOM05D007091 ORTHO05D008768 2.0e-75 286.6 243 63.0
Manes.14G173700 Manihot esculenta HOM05D007091 ORTHO05D008768 3.4e-75 285.8 238 63.9
CANSAT35G2054 Cannabis sativa HOM05D007091 ORTHO05D008768 4.4e-75 285.4 244 64.3
Gohir.A11G233700 Gossypium hirsutum HOM05D007091 ORTHO05D008768 4.4e-75 285.4 252 63.1
Lsat_1_v5_gn_2_11841 Lactuca sativa HOM05D007091 ORTHO05D008768 5.7e-75 285.0 263 60.5
FAN04G2000 Fragaria x ananassa HOM05D007091 ORTHO05D008768 2.2e-74 283.1 219 68.5
Thecc.03G065800 Theobroma cacao HOM05D007091 ORTHO05D008768 2.8e-74 282.7 251 64.9
Lj2g0019861 Lotus japonicus HOM05D007091 ORTHO05D008768 1.1e-73 280.8 243 63.8
COL.COLO4_24457 Corchorus olitorius HOM05D007091 ORTHO05D008768 1.4e-73 280.4 241 64.7
Nitab4.5_0000033g0140 Nicotiana tabacum HOM05D007091 ORTHO05D008768 4.5e-72 275.4 246 63.0
Os05g0387800 Oryza sativa ssp. japonica HOM05D007091 ORTHO05D008768 1.3e-71 273.9 247 61.1
MELO3C001924.2 Cucumis melo HOM05D007091 ORTHO05D008768 2.3e-71 273.1 244 59.0
Migut.I00575 Erythranthe guttata HOM05D007091 ORTHO05D008768 2.9e-71 272.7 254 59.1
SEGI_35239 Sequoiadendron giganteum HOM05D007091 ORTHO05D008768 5.0e-71 271.9 251 60.6
Nitab4.5_0005533g0060 Nicotiana tabacum HOM05D007091 ORTHO05D008768 1.1e-70 270.8 247 62.3
ClCG04G012810 Citrullus lanatus HOM05D007091 ORTHO05D008768 4.2e-70 268.9 244 59.4
Medtr6g072100 Medicago truncatula HOM05D007091 ORTHO05D008768 7.2e-70 268.1 250 61.2
SEGI_03292 Sequoiadendron giganteum HOM05D007091 ORTHO05D008768 1.2e-69 267.3 253 60.1
Atru.chr9.1624 Acer truncatum HOM05D007091 ORTHO05D008768 6.1e-69 265.0 215 68.8
ATR0598G099 Amborella trichopoda HOM05D007091 ORTHO05D008768 6.1e-69 265.0 199 70.4
Haze_18937 Corylus avellana HOM05D007091 ORTHO05D008768 8.0e-69 264.6 208 67.8
Sc10g0009000 Simmondsia chinensis HOM05D007091 ORTHO05D008768 2.3e-68 263.1 241 60.6
HanXRQChr06g0179681 Helianthus annuus HOM05D007091 ORTHO05D008768 1.5e-67 260.4 242 58.7
HPP92_007322 Vanilla planifolia HOM05D007091 ORTHO05D008768 2.8e-66 256.1 241 61.0
CsaV3_1G004900 Cucumis sativus L. HOM05D007091 ORTHO05D008768 6.3e-66 255.0 226 59.3
BraA08t34976Z Brassica rapa HOM05D007091 ORTHO05D008768 7.0e-65 251.5 237 59.9
Zm00001eb256360 Zea mays HOM05D007091 ORTHO05D008768 2.0e-64 250.0 219 62.6
Mapoly0049s0094 Marchantia polymorpha HOM05D007091 ORTHO05D008768 2.7e-64 249.6 252 54.8
AT1G18335 Arabidopsis thaliana HOM05D007091 ORTHO05D008768 3.5e-64 249.2 241 59.8
Sp1g16300 Schrenkiella parvula HOM05D007091 ORTHO05D008768 5.9e-64 248.4 237 60.3
Thhalv10008624m.g Eutrema salsugineum HOM05D007091 ORTHO05D008768 7.8e-64 248.1 241 58.5
SMO347G0535 Selaginella moellendorffii HOM05D007091 ORTHO05D008768 1.0e-63 247.7 236 58.9
C08p18530 Brassica napus HOM05D007091 ORTHO05D008768 2.3e-63 246.5 237 58.2
Aa31LG7G2780 Aethionema arabicum HOM05D007091 ORTHO05D008768 3.8e-63 245.7 238 57.1
BolC8t49485H Brassica oleracea HOM05D007091 ORTHO05D008768 3.8e-63 245.7 237 57.8
BcaC07g38895 Brassica carinata HOM05D007091 ORTHO05D008768 5.0e-63 245.4 237 58.2
A08p30440 Brassica napus HOM05D007091 ORTHO05D008768 5.0e-63 245.4 237 58.2
Psat1g124480 Pisum sativum HOM05D007091 ORTHO05D008768 5.0e-63 245.4 206 65.5
Carub.0001s1796 Capsella rubella HOM05D007091 ORTHO05D008768 2.5e-62 243.0 241 59.3
PSO421G0160 Papaver somniferum HOM05D007091 ORTHO05D008768 3.3e-62 242.7 237 59.5
AL1G30710 Arabidopsis lyrata HOM05D007091 ORTHO05D008768 4.3e-62 242.3 241 58.1
BcaB03g12975 Brassica carinata HOM05D007091 ORTHO05D008768 7.3e-62 241.5 240 57.9
CARHR018920 Cardamine hirsuta HOM05D007091 ORTHO05D008768 9.5e-62 241.1 240 58.3
PSO384G3314 Papaver somniferum HOM05D007091 ORTHO05D008768 1.0e-60 237.7 239 59.8
Oeu058744.1 Olea europaea HOM05D007091 ORTHO05D008768 9.8e-59 231.1 180 70.6
BcaNung05442 Brassica carinata HOM05D005614 ORTHO05D006759 1.1e-57 227.6 235 56.6
EL10Ac1g00193 Beta vulgaris HOM05D007091 ORTHO05D008768 5.4e-57 225.3 193 62.7
MSTRG.11241 Avicennia marina HOM05D007091 ORTHO05D008768 2.3e-55 219.9 172 66.9
Phvul.004G146400 Phaseolus vulgaris HOM05D007091 ORTHO05D008768 5.0e-55 218.8 176 65.9
Pp3c17_14350 Physcomitrium patens HOM05D007091 ORTHO05D008768 7.3e-54 214.9 206 58.3
Os02g0772300 Oryza sativa ssp. japonica HOM05D007091 ORTHO05D008768 6.2e-53 211.8 201 58.7
SGA_v2.0_scaffold40G15610 Striga asiatica HOM05D007091 ORTHO05D008768 6.2e-53 211.8 196 60.2
Hund27153 Selenicereus undatus HOM05D007091 ORTHO05D008768 2.0e-51 206.8 238 52.1
ECA238G0701 Erigeron canadensis HOM05D007091 ORTHO05D008768 2.7e-48 196.4 173 60.7
AUR62022670 Chenopodium quinoa HOM05D007091 ORTHO05D008768 1.3e-47 194.1 170 62.4
AUR62004555 Chenopodium quinoa HOM05D007091 ORTHO05D008768 3.9e-47 192.6 170 62.4
SHI19106 Sapria himalayana HOM05D007091 ORTHO05D008768 2.5e-46 189.9 169 59.8
Sed0004344 Sechium edule HOM05D007091 ORTHO05D008768 1.6e-45 187.2 176 56.8
AagrBONN_evm.TU.Sc2ySwM_228.1246 Anthoceros agrestis HOM05D007091 ORTHO05D008768 1.1e-44 184.5 216 47.7
Lj9P415T25 Lonicera japonica HOM05D007091 ORTHO05D008768 5.8e-43 178.7 134 67.9
Pp3c9_11360 Physcomitrium patens HOM05D000137 ORTHO05D000382 2.2e-42 176.8 245 44.5
Pp3c15_11610 Physcomitrium patens HOM05D000137 ORTHO05D008768 2.5e-38 163.3 256 40.2
PGSC0003DMG401027044 Solanum tuberosum HOM05D007091 ORTHO05D008768 5.2e-36 155.6 138 61.6
CBR_g40646 Chara braunii HOM05D007091 ORTHO05D008768 1.8e-28 130.6 393 28.8
MCO05G578 Micromonas commoda HOM05D007091 ORTHO05D008768 1.2e-27 127.9 246 37.4
BcaC03g18194 Brassica carinata HOM05D007091 ORTHO05D008768 4.9e-26 122.5 123 56.9
TWI81G1026 Tripterygium wilfordii HOM05D007091 ORTHO05D008768 4.9e-26 122.5 136 55.9
unitig_21.g20331 Utricularia gibba HOM05D007091 ORTHO05D008768 8.4e-26 121.7 106 61.3
C02p62570 Brassica napus HOM05D001735 ORTHO05D001640 4.5e-19 99.4 80 67.5
BolC2t12316H Brassica oleracea HOM05D007091 ORTHO05D008768 1.2e-16 91.3 92 57.6
PSO832G1393 Papaver somniferum HOM05D007091 ORTHO05D008768 1.5e-14 84.3 103 52.4
Cre10.g431450 Chlamydomonas reinhardtii HOM05D007091 ORTHO05D008768 1.5e-11 74.3 154 33.1
BolC1t04291H Brassica oleracea HOM05D004766 ORTHO05D008768 8.4e-10 68.6 63 57.1
C09p32190 Brassica napus HOM05D004766 ORTHO05D008768 1.9e-09 67.4 76 52.6
MCO15G558 Micromonas commoda HOM05D007091 ORTHO05D008768 1.9e-09 67.4 202 27.7
MCO07G264 Micromonas commoda HOM05D007091 ORTHO05D008768 1.2e-08 64.7 130 33.1
A06p41130 Brassica napus HOM05D000061 ORTHO05D000050 4.6e-08 62.8 69 52.2
BraA06t27036Z Brassica rapa HOM05D000061 ORTHO05D000050 4.6e-08 62.8 69 52.2
PRCOL_00001323 Prasinoderma coloniale HOM05D007091 ORTHO05D008768 3.9e-07 59.7 163 31.9
BcaC04g23924 Brassica carinata HOM05D004766 ORTHO05D039973 1.9e-06 57.4 60 50.0


User provided reference genes

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