Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046663 Camellia sinensis var. sinensis HOM05D000229 ORTHO05D022109 1.1e-39 166.0 75 100.0
CSS0027409 Camellia sinensis var. sinensis HOM05D000229 ORTHO05D022109 1.5e-36 155.6 87 85.1
CSS0032126 Camellia sinensis var. sinensis HOM05D000229 ORTHO05D022109 2.9e-32 141.4 83 83.1
Rhsim05G0214400 Rhododendron simsii HOM05D000229 ORTHO05D000182 2.4e-10 68.6 62 56.5
Dinv20490 Davidia involucrata HOM05D000229 ORTHO05D000182 4.1e-10 67.8 62 54.8
Dinv20552 Davidia involucrata HOM05D000229 ORTHO05D000182 4.1e-10 67.8 62 54.8
Dinv07305 Davidia involucrata HOM05D000229 ORTHO05D000182 7.0e-10 67.0 62 51.6
Cfa009574 Carpinus fangiana HOM05D000229 ORTHO05D000182 2.0e-09 65.5 62 53.2
vmacro21060 Vaccinium macrocarpon HOM05D000229 ORTHO05D022109 2.7e-09 65.1 62 53.2
vmacro21062 Vaccinium macrocarpon HOM05D000229 ORTHO05D000182 2.7e-09 65.1 62 51.6
Haze_22954 Corylus avellana HOM05D000229 ORTHO05D001415 3.5e-09 64.7 62 51.6
Rhsim09G0084400 Rhododendron simsii HOM05D000229 ORTHO05D000182 3.5e-09 64.7 62 51.6
GSVIVG01011585001 Vitis vinifera HOM05D000229 ORTHO05D000182 3.5e-09 64.7 62 51.6
Gohir.A02G033000 Gossypium hirsutum HOM05D000229 ORTHO05D000182 4.5e-09 64.3 62 50.0
Manes.15G139400 Manihot esculenta HOM05D000229 ORTHO05D000182 4.5e-09 64.3 62 51.6
CSS0023105 Camellia sinensis var. sinensis HOM05D000229 ORTHO05D000182 5.9e-09 63.9 62 51.6
vmacro21063 Vaccinium macrocarpon HOM05D000229 ORTHO05D000182 5.9e-09 63.9 61 52.5
QL03p039344 Quercus lobata HOM05D000229 ORTHO05D000182 7.7e-09 63.5 62 51.6
Thecc.02G240200 Theobroma cacao HOM05D000229 ORTHO05D000182 7.7e-09 63.5 62 51.6
CSS0038468 Camellia sinensis var. sinensis HOM05D000229 ORTHO05D000182 1.0e-08 63.2 62 50.0
Ciclev10032093m.g Citrus clementina HOM05D000229 ORTHO05D000182 1.0e-08 63.2 62 48.4
Gohir.A01G145438 Gossypium hirsutum HOM05D000229 ORTHO05D000182 1.0e-08 63.2 62 48.4
Gohir.D01G135500 Gossypium hirsutum HOM05D000229 ORTHO05D000182 1.0e-08 63.2 62 48.4
Gorai.002G170600 Gossypium raimondii HOM05D000229 ORTHO05D000182 1.0e-08 63.2 62 48.4
Gorai.005G043800 Gossypium raimondii HOM05D000229 ORTHO05D000182 1.0e-08 63.2 62 48.4
Rhsim01G0140600 Rhododendron simsii HOM05D000229 ORTHO05D000182 1.0e-08 63.2 62 51.6
CSS0003739 Camellia sinensis var. sinensis HOM05D000229 ORTHO05D000182 1.3e-08 62.8 62 48.4
CSS0032790 Camellia sinensis var. sinensis HOM05D000229 ORTHO05D000182 1.3e-08 62.8 62 48.4
MBI04_g26958_MAGBIO Magnolia biondii HOM05D000229 ORTHO05D000182 1.3e-08 62.8 62 48.4
Gohir.A01G145000 Gossypium hirsutum HOM05D000229 ORTHO05D000182 1.7e-08 62.4 62 48.4
Gorai.002G170700 Gossypium raimondii HOM05D000229 ORTHO05D000182 1.7e-08 62.4 62 48.4
Hma1.2p1_0055F.1_g031320 Hydrangea macrophylla HOM05D000229 ORTHO05D000182 1.7e-08 62.4 62 50.0
vmacro21061 Vaccinium macrocarpon HOM05D000229 ORTHO05D000182 1.7e-08 62.4 62 50.0
CiPaw.13G092900 Carya illinoinensis HOM05D000229 ORTHO05D000182 2.2e-08 62.0 62 51.6
Gohir.D01G135400 Gossypium hirsutum HOM05D000229 ORTHO05D000182 2.9e-08 61.6 62 48.4
Gohir.D02G138000 Gossypium hirsutum HOM05D000229 ORTHO05D000182 2.9e-08 61.6 62 50.0
Gorai.005G154500 Gossypium raimondii HOM05D000229 ORTHO05D000182 2.9e-08 61.6 62 50.0
Hma1.2p1_0055F.1_g031280 Hydrangea macrophylla HOM05D000229 ORTHO05D000182 2.9e-08 61.6 62 48.4
Manes.03G077000 Manihot esculenta HOM05D000229 ORTHO05D000182 2.9e-08 61.6 62 53.2
CiPaw.14G068100 Carya illinoinensis HOM05D000229 ORTHO05D000182 3.8e-08 61.2 62 46.8
Eucgr.B02642 Eucalyptus grandis HOM05D000229 ORTHO05D000182 3.8e-08 61.2 62 48.4
Eucgr.B02645 Eucalyptus grandis HOM05D000229 ORTHO05D000182 3.8e-08 61.2 62 48.4
TAR662G0001 Trochodendron aralioides HOM05D000229 ORTHO05D000182 3.8e-08 61.2 62 48.4
CiPaw.11G149000 Carya illinoinensis HOM05D000229 ORTHO05D000182 5.0e-08 60.8 62 46.8
CiPaw.13G092800 Carya illinoinensis HOM05D000229 ORTHO05D000182 5.0e-08 60.8 62 51.6
CiPaw.14G068200 Carya illinoinensis HOM05D000229 ORTHO05D000182 5.0e-08 60.8 62 46.8
Eucgr.B02567 Eucalyptus grandis HOM05D000229 ORTHO05D000182 5.0e-08 60.8 62 50.0
Eucgr.G00570 Eucalyptus grandis HOM05D000229 ORTHO05D000182 5.0e-08 60.8 62 48.4
TAR371G0951 Trochodendron aralioides HOM05D000229 ORTHO05D000182 5.0e-08 60.8 62 45.2
TAR504G0001 Trochodendron aralioides HOM05D000229 ORTHO05D000182 5.0e-08 60.8 62 46.8
COL.COLO4_27557 Corchorus olitorius HOM05D000229 ORTHO05D000182 6.5e-08 60.5 62 46.8
Manes.15G139500 Manihot esculenta HOM05D000229 ORTHO05D000182 6.5e-08 60.5 62 46.8
CSS0003271 Camellia sinensis var. sinensis HOM05D000229 ORTHO05D000182 8.5e-08 60.1 62 48.4
Ciclev10015868m.g Citrus clementina HOM05D000229 ORTHO05D000182 8.5e-08 60.1 62 45.2
COL.COLO4_37226 Corchorus olitorius HOM05D000229 ORTHO05D000182 8.5e-08 60.1 62 46.8
Gohir.A03G113700 Gossypium hirsutum HOM05D000229 ORTHO05D000182 8.5e-08 60.1 61 49.2
Gohir.A03G143300 Gossypium hirsutum HOM05D000229 ORTHO05D000182 8.5e-08 60.1 62 46.8
Gohir.A03G143600 Gossypium hirsutum HOM05D000229 ORTHO05D000182 8.5e-08 60.1 62 46.8
Gohir.D02G166500 Gossypium hirsutum HOM05D000229 ORTHO05D000182 8.5e-08 60.1 62 46.8
Gohir.D02G166600 Gossypium hirsutum HOM05D000229 ORTHO05D000182 8.5e-08 60.1 62 46.8
Gorai.005G186700 Gossypium raimondii HOM05D000229 ORTHO05D000182 8.5e-08 60.1 62 46.8
Duzib251G0370 Durio zibethinus HOM05D000229 ORTHO05D000182 1.1e-07 59.7 62 46.8
TAR629G2328 Trochodendron aralioides HOM05D000229 ORTHO05D000182 1.1e-07 59.7 62 46.8
Duzib268G1783 Durio zibethinus HOM05D000229 ORTHO05D000182 1.5e-07 59.3 62 45.2
Sed0001130 Sechium edule HOM05D000229 ORTHO05D000182 1.5e-07 59.3 62 50.0
CSS0028452 Camellia sinensis var. sinensis HOM05D000229 ORTHO05D000182 1.9e-07 58.9 61 49.2
Duzib248G1207 Durio zibethinus HOM05D000229 ORTHO05D000182 1.9e-07 58.9 62 46.8
Eucgr.B02639 Eucalyptus grandis HOM05D000229 ORTHO05D000182 1.9e-07 58.9 62 45.2
FvH4_3g20300 Fragaria vesca HOM05D000229 ORTHO05D000182 1.9e-07 58.9 62 48.4
FAN11G3233 Fragaria x ananassa HOM05D000229 ORTHO05D000182 1.9e-07 58.9 62 48.4
FAN16G1612 Fragaria x ananassa HOM05D000229 ORTHO05D000182 1.9e-07 58.9 62 48.4
Hma1.2p1_0265F.1_g106220 Hydrangea macrophylla HOM05D000229 ORTHO05D000182 1.9e-07 58.9 62 48.4
MBI19_g27703_MAGBIO Magnolia biondii HOM05D000229 ORTHO05D000182 1.9e-07 58.9 62 46.8
Potri.005G097000 Populus trichocarpa HOM05D000229 ORTHO05D000182 1.9e-07 58.9 62 46.8
Eucgr.B02647 Eucalyptus grandis HOM05D000229 ORTHO05D000182 2.5e-07 58.5 67 44.8
COL.COLO4_27563 Corchorus olitorius HOM05D000229 ORTHO05D000182 3.2e-07 58.2 62 43.5
Gohir.A03G143700 Gossypium hirsutum HOM05D000229 ORTHO05D000182 3.2e-07 58.2 62 43.5
Gorai.005G187000 Gossypium raimondii HOM05D000229 ORTHO05D000182 3.2e-07 58.2 62 43.5
Lsat_1_v5_gn_8_33661 Lactuca sativa HOM05D000229 ORTHO05D000182 3.2e-07 58.2 62 46.8
MBI19_g44519_MAGBIO Magnolia biondii HOM05D000229 ORTHO05D000182 3.2e-07 58.2 62 46.8
GSVIVG01011582001 Vitis vinifera HOM05D000229 ORTHO05D000182 3.2e-07 58.2 62 45.2
Ciclev10017512m.g Citrus clementina HOM05D000229 ORTHO05D000182 4.2e-07 57.8 62 43.5
Duzib268G0670 Durio zibethinus HOM05D000229 ORTHO05D000182 4.2e-07 57.8 62 46.8
Eucgr.B02646 Eucalyptus grandis HOM05D000229 ORTHO05D000182 4.2e-07 57.8 62 45.2
RcHm_v2.0_Chr7g0225361 Rosa chinensis HOM05D000229 ORTHO05D000182 4.2e-07 57.8 62 46.8
Duzib268G0570 Durio zibethinus HOM05D000229 ORTHO05D000182 5.5e-07 57.4 62 46.8
RcHm_v2.0_Chr1g0329311 Rosa chinensis HOM05D000229 ORTHO05D000182 5.5e-07 57.4 62 48.4
Thecc.02G301600 Theobroma cacao HOM05D000229 ORTHO05D000182 5.5e-07 57.4 62 45.2
Thecc.02G301800 Theobroma cacao HOM05D000229 ORTHO05D000182 5.5e-07 57.4 62 45.2
TPR.G21402 Trifolium pratense HOM05D000229 ORTHO05D000182 5.5e-07 57.4 62 46.8
Atru.chr11.828 Acer truncatum HOM05D000229 ORTHO05D000182 7.2e-07 57.0 62 48.4
CiPaw.14G068000 Carya illinoinensis HOM05D000229 ORTHO05D000182 7.2e-07 57.0 62 45.2
Duzib248G0745 Durio zibethinus HOM05D000229 ORTHO05D000182 7.2e-07 57.0 62 43.5
FvH4_4g35840 Fragaria vesca HOM05D000229 ORTHO05D000182 7.2e-07 57.0 62 43.5
FAN12G1665 Fragaria x ananassa HOM05D000229 ORTHO05D000182 7.2e-07 57.0 62 43.5
FAN21G1709 Fragaria x ananassa HOM05D000229 ORTHO05D000182 7.2e-07 57.0 62 46.8
Gorai.005G186800 Gossypium raimondii HOM05D000229 ORTHO05D000182 7.2e-07 57.0 62 48.4
GSVIVG01011583001 Vitis vinifera HOM05D000229 ORTHO05D000182 7.2e-07 57.0 62 43.5
CANSAT78G1394 Cannabis sativa HOM05D000229 ORTHO05D000182 9.4e-07 56.6 62 43.5
Hma1.2p1_0289F.1_g114670 Hydrangea macrophylla HOM05D000229 ORTHO05D000182 9.4e-07 56.6 62 46.8
Lj3A858T46 Lonicera japonica HOM05D000229 ORTHO05D000182 9.4e-07 56.6 62 43.5
GSVIVG01011584001 Vitis vinifera HOM05D000229 ORTHO05D000182 9.4e-07 56.6 62 48.4
Actinidia28168 Actinidia chinensis HOM05D000229 ORTHO05D000182 1.2e-06 56.2 62 43.5
Aa31LG2G10290 Aethionema arabicum HOM05D000229 ORTHO05D000182 1.2e-06 56.2 62 43.5
AT1G59950 Arabidopsis thaliana HOM05D000229 ORTHO05D000182 1.2e-06 56.2 62 43.5
Cpa.g.sc2.114 Carica papaya HOM05D000229 ORTHO05D000182 1.2e-06 56.2 62 43.5
COL.COLO4_37880 Corchorus olitorius HOM05D000229 ORTHO05D000182 1.2e-06 56.2 62 41.9
DCAR_030312 Daucus carota HOM05D000229 ORTHO05D000182 1.2e-06 56.2 62 46.8
DCAR_030314 Daucus carota HOM05D000229 ORTHO05D000182 1.2e-06 56.2 62 43.5
Dinv07303 Davidia involucrata HOM05D000229 ORTHO05D000182 1.2e-06 56.2 62 41.9
Lj6C729T8 Lonicera japonica HOM05D000229 ORTHO05D000182 1.2e-06 56.2 62 46.8
arahy.Tifrunner.gnm1.ann1.QZ74IT Arachis hypogaea HOM05D000229 ORTHO05D000182 1.6e-06 55.8 65 44.6
CSS0023009 Camellia sinensis var. sinensis HOM05D000229 ORTHO05D000182 1.6e-06 55.8 62 40.3
Cpa.g.sc33.25 Carica papaya HOM05D000229 ORTHO05D000182 1.6e-06 55.8 62 48.4
Haze_03338 Corylus avellana HOM05D000229 ORTHO05D000182 1.6e-06 55.8 62 46.8
DCAR_030311 Daucus carota HOM05D000229 ORTHO05D000182 1.6e-06 55.8 62 46.8
MBI11_g02030_MAGBIO Magnolia biondii HOM05D000229 ORTHO05D000182 1.6e-06 55.8 62 46.8
MBI11_g24655_MAGBIO Magnolia biondii HOM05D000229 ORTHO05D000182 1.6e-06 55.8 62 46.8
Sabra08G0146700 Salix brachista HOM05D000229 ORTHO05D000182 1.6e-06 55.8 62 45.2
vmacro00631 Vaccinium macrocarpon HOM05D000229 ORTHO05D000182 1.6e-06 55.8 63 44.4
Aqoxy3G03134 Aquilegia oxysepala HOM05D000229 ORTHO05D000182 2.1e-06 55.5 62 45.2
CARHR053090 Cardamine hirsuta HOM05D000229 ORTHO05D000182 2.1e-06 55.5 62 43.5
Cfa010386 Carpinus fangiana HOM05D000229 ORTHO05D000182 2.1e-06 55.5 76 40.8
COL.COLO4_24816 Corchorus olitorius HOM05D000229 ORTHO05D000182 2.1e-06 55.5 62 46.8
COL.COLO4_36291 Corchorus olitorius HOM05D000229 ORTHO05D000182 2.1e-06 55.5 62 46.8
COL.COLO4_37879 Corchorus olitorius HOM05D000229 ORTHO05D000182 2.1e-06 55.5 62 45.2
MBI11_g19679_MAGBIO Magnolia biondii HOM05D000229 ORTHO05D000182 2.1e-06 55.5 62 46.8
Peaxi162Scf01141g00033 Petunia axillaris HOM05D000229 ORTHO05D000182 2.1e-06 55.5 62 46.8
RcHm_v2.0_Chr6g0281251 Rosa chinensis HOM05D000229 ORTHO05D000182 2.1e-06 55.5 62 45.2
Atru.chr11.1938 Acer truncatum HOM05D000229 ORTHO05D000182 2.7e-06 55.1 62 41.9
CANSAT78G1717 Cannabis sativa HOM05D000229 ORTHO05D000182 2.7e-06 55.1 62 43.5
COL.COLO4_24819 Corchorus olitorius HOM05D000229 ORTHO05D000182 2.7e-06 55.1 62 46.8
ECA233G4561 Erigeron canadensis HOM05D000229 ORTHO05D000182 2.7e-06 55.1 62 41.9
Eucgr.H02498 Eucalyptus grandis HOM05D000229 ORTHO05D000182 2.7e-06 55.1 62 45.2
Manes.17G090600 Manihot esculenta HOM05D000229 ORTHO05D000182 2.7e-06 55.1 62 40.3
Manes.17G090700 Manihot esculenta HOM05D000229 ORTHO05D000182 2.7e-06 55.1 62 40.3
QL05p048482 Quercus lobata HOM05D000229 ORTHO05D000182 2.7e-06 55.1 62 45.2
Sp2g04650 Schrenkiella parvula HOM05D000229 ORTHO05D000182 2.7e-06 55.1 62 41.9
Ciclev10013925m.g Citrus clementina HOM05D000229 ORTHO05D000182 3.6e-06 54.7 62 45.2
Dinv20489 Davidia involucrata HOM05D000229 ORTHO05D000182 3.6e-06 54.7 62 40.3
Gohir.D04G179900 Gossypium hirsutum HOM05D000229 ORTHO05D000182 3.6e-06 54.7 62 48.4
Actinidia31368 Actinidia chinensis HOM05D000229 ORTHO05D000182 4.7e-06 54.3 62 43.5
Carub.0002s0533 Capsella rubella HOM05D000229 ORTHO05D000182 4.7e-06 54.3 62 41.9
Carub.0002s0534 Capsella rubella HOM05D000229 ORTHO05D000182 4.7e-06 54.3 62 41.9
Cfa010385 Carpinus fangiana HOM05D000229 ORTHO05D000182 4.7e-06 54.3 60 48.3
Duzib248G1221 Durio zibethinus HOM05D000229 ORTHO05D000182 4.7e-06 54.3 62 43.5
FvH4_4g25612 Fragaria vesca HOM05D000229 ORTHO05D000182 4.7e-06 54.3 62 45.2
FAN22G1907 Fragaria x ananassa HOM05D000229 ORTHO05D000182 4.7e-06 54.3 62 45.2
HanXRQChr08g0224491 Helianthus annuus HOM05D000229 ORTHO05D000182 4.7e-06 54.3 62 40.3
MBI11_g34192_MAGBIO Magnolia biondii HOM05D000229 ORTHO05D000182 4.7e-06 54.3 62 48.4
Prupe.1G245400 Prunus persica HOM05D000229 ORTHO05D000182 4.7e-06 54.3 62 43.5
Thecc.02G301900 Theobroma cacao HOM05D000229 ORTHO05D000182 4.7e-06 54.3 62 41.9
BcaB07g31191 Brassica carinata HOM05D000229 ORTHO05D000182 6.1e-06 53.9 62 41.9
A09p17820 Brassica napus HOM05D000229 ORTHO05D000182 6.1e-06 53.9 62 41.9
C09p22170 Brassica napus HOM05D000229 ORTHO05D000182 6.1e-06 53.9 62 41.9
BolC9t55132H Brassica oleracea HOM05D000229 ORTHO05D000182 6.1e-06 53.9 62 41.9
Cfa015810 Carpinus fangiana HOM05D000229 ORTHO05D000182 6.1e-06 53.9 61 49.2
Duzib251G0157 Durio zibethinus HOM05D000229 ORTHO05D000182 6.1e-06 53.9 62 41.9
Eucgr.L02641 Eucalyptus grandis HOM05D000229 ORTHO05D000182 6.1e-06 53.9 62 41.9
QL03p039465 Quercus lobata HOM05D000229 ORTHO05D000182 6.1e-06 53.9 62 41.9
RcHm_v2.0_Chr5g0068101 Rosa chinensis HOM05D000229 ORTHO05D000182 6.1e-06 53.9 62 40.3
THA.LOC104816733 Tarenaya hassleriana HOM05D000229 ORTHO05D000182 6.1e-06 53.9 62 41.9
VMungo0720G1973 Vigna mungo HOM05D000229 ORTHO05D000182 6.1e-06 53.9 62 45.2
BraA09t37415Z Brassica rapa HOM05D000229 ORTHO05D000182 8.0e-06 53.5 62 41.9
Cfa015799 Carpinus fangiana HOM05D000229 ORTHO05D000182 8.0e-06 53.5 61 49.2
CiPaw.13G051300 Carya illinoinensis HOM05D000229 ORTHO05D000182 8.0e-06 53.5 62 45.2
CiPaw.13G051400 Carya illinoinensis HOM05D000229 ORTHO05D000182 8.0e-06 53.5 62 45.2
COL.COLO4_36650 Corchorus olitorius HOM05D000229 ORTHO05D000182 8.0e-06 53.5 61 39.3
Dinv07016 Davidia involucrata HOM05D000229 ORTHO05D000182 8.0e-06 53.5 62 38.7
Dinv20488 Davidia involucrata HOM05D000229 ORTHO05D000182 8.0e-06 53.5 62 38.7
Dinv20553 Davidia involucrata HOM05D000229 ORTHO05D000182 8.0e-06 53.5 62 38.7
Dinv20554 Davidia involucrata HOM05D000229 ORTHO05D000182 8.0e-06 53.5 62 38.7
Duzib251G0256 Durio zibethinus HOM05D000229 ORTHO05D000182 8.0e-06 53.5 62 41.9
Nn4g22915 Nelumbo nucifera HOM05D000229 ORTHO05D000182 8.0e-06 53.5 62 43.5
Nitab4.5_0000175g0260 Nicotiana tabacum HOM05D000229 ORTHO05D000182 8.0e-06 53.5 62 40.3
Prupe.1G244700 Prunus persica HOM05D000229 ORTHO05D000182 8.0e-06 53.5 62 41.9
Prupe.1G245100 Prunus persica HOM05D000229 ORTHO05D000182 8.0e-06 53.5 62 41.9
RcHm_v2.0_Chr4g0395321 Rosa chinensis HOM05D000229 ORTHO05D000182 8.0e-06 53.5 62 43.5
RcHm_v2.0_Chr4g0445421 Rosa chinensis HOM05D000229 ORTHO05D000182 8.0e-06 53.5 62 45.2
GSVIVG01011577001 Vitis vinifera HOM05D000229 ORTHO05D000182 8.0e-06 53.5 62 41.9
GSVIVG01011579001 Vitis vinifera HOM05D000229 ORTHO05D000182 8.0e-06 53.5 62 38.7


User provided reference genes

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