Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.1e-78 296.6 146 100.0
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 3.1e-14 82.4 40 97.5
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 3.1e-14 82.4 40 97.5
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 3.5e-13 79.0 40 92.5
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 4.5e-13 78.6 40 92.5
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 5.9e-13 78.2 61 65.6
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 7.7e-13 77.8 40 90.0
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 7.7e-13 77.8 40 90.0
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 7.7e-13 77.8 40 90.0
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.0e-12 77.4 64 65.6
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.0e-12 77.4 64 65.6
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 1.0e-12 77.4 40 90.0
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 1.0e-12 77.4 40 90.0
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 1.3e-12 77.0 59 67.8
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 1.7e-12 76.6 59 66.1
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 2.2e-12 76.3 40 87.5
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 2.2e-12 76.3 40 87.5
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 2.2e-12 76.3 59 64.4
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 2.2e-12 76.3 40 87.5
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 2.2e-12 76.3 40 87.5
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 2.2e-12 76.3 40 87.5
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 2.2e-12 76.3 40 87.5
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 2.2e-12 76.3 40 87.5
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 2.2e-12 76.3 40 87.5
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 2.2e-12 76.3 40 87.5
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 2.2e-12 76.3 40 87.5
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 2.2e-12 76.3 40 87.5
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 2.9e-12 75.9 40 87.5
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 2.9e-12 75.9 40 87.5
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 2.9e-12 75.9 40 87.5
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 2.9e-12 75.9 40 87.5
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 3.8e-12 75.5 40 85.0
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 3.8e-12 75.5 40 85.0
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 3.8e-12 75.5 59 64.4
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 5.0e-12 75.1 59 66.1
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 5.0e-12 75.1 40 85.0
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 6.5e-12 74.7 40 87.5
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 6.5e-12 74.7 40 85.0
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 6.5e-12 74.7 40 85.0
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 6.5e-12 74.7 40 85.0
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 6.5e-12 74.7 40 85.0
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 6.5e-12 74.7 40 85.0
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 6.5e-12 74.7 40 85.0
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 8.5e-12 74.3 40 85.0
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 8.5e-12 74.3 40 85.0
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 8.5e-12 74.3 40 85.0
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 1.1e-11 73.9 59 64.4
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 1.1e-11 73.9 42 78.6
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 1.5e-11 73.6 40 82.5
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.5e-11 73.6 40 82.5
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.5e-11 73.6 40 82.5
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.5e-11 73.6 40 82.5
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.5e-11 73.6 40 82.5
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 1.5e-11 73.6 40 82.5
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 1.5e-11 73.6 40 85.0
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 1.9e-11 73.2 40 82.5
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 1.9e-11 73.2 40 82.5
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 1.9e-11 73.2 40 82.5
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.9e-11 73.2 57 64.9
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 2.5e-11 72.8 40 82.5
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 2.5e-11 72.8 60 60.0
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 3.2e-11 72.4 40 82.5
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 3.2e-11 72.4 40 82.5
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 3.2e-11 72.4 40 82.5
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 3.2e-11 72.4 40 80.0
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 4.2e-11 72.0 40 80.0
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 4.2e-11 72.0 40 80.0
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 4.2e-11 72.0 40 80.0
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 4.2e-11 72.0 40 80.0
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 4.2e-11 72.0 40 80.0
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 4.2e-11 72.0 40 82.5
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 4.2e-11 72.0 42 76.2
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 4.2e-11 72.0 40 80.0
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 4.2e-11 72.0 51 68.6
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 4.2e-11 72.0 40 80.0
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 4.2e-11 72.0 40 82.5
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 4.2e-11 72.0 40 82.5
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 5.5e-11 71.6 40 80.0
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 5.5e-11 71.6 40 80.0
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 5.5e-11 71.6 41 78.0
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 5.5e-11 71.6 40 80.0
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 7.2e-11 71.2 40 80.0
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 7.2e-11 71.2 40 80.0
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 7.2e-11 71.2 40 80.0
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 9.4e-11 70.9 47 66.0
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 9.4e-11 70.9 41 75.6
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 9.4e-11 70.9 55 61.8
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 1.2e-10 70.5 40 75.0
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 1.2e-10 70.5 40 75.0
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 1.2e-10 70.5 40 75.0
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 1.2e-10 70.5 40 77.5
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 1.2e-10 70.5 40 75.0
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 1.2e-10 70.5 40 75.0
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 1.2e-10 70.5 60 58.3
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 1.6e-10 70.1 40 75.0
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 1.6e-10 70.1 40 85.0
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 1.6e-10 70.1 40 85.0
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 1.6e-10 70.1 57 66.7
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.6e-10 70.1 40 80.0
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 2.1e-10 69.7 40 75.0
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 2.1e-10 69.7 40 85.0
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 2.1e-10 69.7 40 85.0
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 2.1e-10 69.7 46 65.2
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 2.1e-10 69.7 40 77.5
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 2.1e-10 69.7 40 77.5
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 2.7e-10 69.3 47 76.6
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 3.6e-10 68.9 40 77.5
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 3.6e-10 68.9 40 77.5
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 3.6e-10 68.9 40 77.5
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 3.6e-10 68.9 40 75.0
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 3.6e-10 68.9 40 82.5
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 4.7e-10 68.6 40 77.5
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 6.1e-10 68.2 40 72.5
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 8.0e-10 67.8 40 82.5
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 8.0e-10 67.8 40 82.5
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 8.0e-10 67.8 40 72.5
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 8.0e-10 67.8 40 82.5
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 8.0e-10 67.8 40 82.5
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 8.0e-10 67.8 48 66.7
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 1.0e-09 67.4 40 82.5
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 1.0e-09 67.4 40 82.5
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 1.0e-09 67.4 40 70.0
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.0e-09 67.4 57 57.9
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 1.0e-09 67.4 40 77.5
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 1.0e-09 67.4 40 82.5
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 1.8e-09 66.6 43 67.4
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 1.8e-09 66.6 40 80.0
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 3.0e-09 65.9 40 72.5
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 3.0e-09 65.9 57 56.1
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 3.0e-09 65.9 40 75.0
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 4.0e-09 65.5 43 67.4
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 4.0e-09 65.5 43 65.1
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 4.0e-09 65.5 43 67.4
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 4.0e-09 65.5 40 70.0
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 4.0e-09 65.5 40 70.0
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 4.0e-09 65.5 40 70.0
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 5.2e-09 65.1 43 65.1
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 5.2e-09 65.1 40 75.0
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 1.2e-08 63.9 36 75.0
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 1.2e-08 63.9 40 77.5
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 5.7e-08 61.6 48 58.3
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 1.3e-07 60.5 55 54.5
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.7e-07 60.1 40 70.0
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 1.7e-07 60.1 40 70.0
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 1.7e-07 60.1 40 72.5
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 3.7e-07 58.9 40 70.0
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 4.8e-07 58.5 40 67.5
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.8e-06 56.6 40 67.5
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 7.0e-06 54.7 64 45.3
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 7.0e-06 54.7 64 45.3
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 9.1e-06 54.3 60 48.3


User provided reference genes

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