Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046652 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.3e-60 235.3 116 100.0
CSS0032916 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.8e-52 209.1 116 90.5
CSS0002085 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.5e-43 178.7 103 86.4
CSS0046591 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.8e-42 175.3 134 72.4
CSS0001709 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.9e-39 165.2 103 82.5
CSS0028889 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 3.6e-37 158.3 118 73.7
CSS0015899 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 6.1e-37 157.5 102 81.4
CSS0031993 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.0e-35 152.5 98 81.6
QL11p012061 Quercus lobata HOM05D003515 ORTHO05D004347 2.6e-35 152.1 96 82.3
Gohir.A05G245600 Gossypium hirsutum HOM05D003515 ORTHO05D004347 2.2e-34 149.1 96 78.1
Gohir.D05G247100 Gossypium hirsutum HOM05D003515 ORTHO05D004347 2.2e-34 149.1 96 78.1
COL.COLO4_16231 Corchorus olitorius HOM05D003515 ORTHO05D004347 3.7e-34 148.3 96 77.1
Gorai.009G257800 Gossypium raimondii HOM05D003515 ORTHO05D004347 4.8e-34 147.9 96 77.1
vmacro03558 Vaccinium macrocarpon HOM05D003515 ORTHO05D004347 4.8e-34 147.9 91 82.4
Cfa001125 Carpinus fangiana HOM05D003515 ORTHO05D004347 1.1e-33 146.7 96 78.1
Rhsim13G0134000 Rhododendron simsii HOM05D003515 ORTHO05D004347 1.1e-33 146.7 91 81.3
RhsimUnG0176900 Rhododendron simsii HOM05D003515 ORTHO05D004347 1.1e-33 146.7 91 81.3
Thecc.02G003700 Theobroma cacao HOM05D003515 ORTHO05D004347 1.1e-33 146.7 96 77.1
Lj1C1149T14 Lonicera japonica HOM05D003515 ORTHO05D004347 2.4e-33 145.6 90 83.3
Atru.chr10.315 Acer truncatum HOM05D003515 ORTHO05D004347 3.1e-33 145.2 96 77.1
Haze_05267 Corylus avellana HOM05D003515 ORTHO05D004347 3.1e-33 145.2 96 78.1
Manes.03G074900 Manihot esculenta HOM05D003515 ORTHO05D004347 3.1e-33 145.2 96 78.1
Ciclev10014398m.g Citrus clementina HOM05D003515 ORTHO05D004347 5.3e-33 144.4 96 77.1
Hma1.2p1_0088F.1_g045243 Hydrangea macrophylla HOM05D003515 ORTHO05D004347 9.1e-33 143.7 91 82.4
Duzib132G1190 Durio zibethinus HOM05D003515 ORTHO05D004347 1.5e-32 142.9 96 75.0
CiPaw.10G105500 Carya illinoinensis HOM05D003515 ORTHO05D004347 2.0e-32 142.5 96 76.0
RcHm_v2.0_Chr5g0021171 Rosa chinensis HOM05D003515 ORTHO05D004347 7.7e-32 140.6 96 76.0
FAN16G1075 Fragaria x ananassa HOM05D003515 ORTHO05D004347 1.7e-31 139.4 96 76.0
FAN21G1878 Fragaria x ananassa HOM05D003515 ORTHO05D004347 1.7e-31 139.4 96 76.0
MD10G1227200 Malus domestica HOM05D003515 ORTHO05D004347 1.7e-31 139.4 96 75.0
Prupe.4G118000 Prunus persica HOM05D003515 ORTHO05D004347 1.7e-31 139.4 96 75.0
FvH4_3g13010 Fragaria vesca HOM05D003515 ORTHO05D004347 3.8e-31 138.3 96 75.0
FAN11G3814 Fragaria x ananassa HOM05D003515 ORTHO05D004347 3.8e-31 138.3 96 75.0
RcHm_v2.0_Chr5g0021201 Rosa chinensis HOM05D003515 ORTHO05D004347 5.0e-31 137.9 96 74.0
Glyma.08G088900 Glycine max HOM05D003515 ORTHO05D004347 6.5e-31 137.5 96 75.0
Lj4g0010619 Lotus japonicus HOM05D003515 ORTHO05D004347 1.5e-30 136.3 96 74.0
Medtr4g094755 Medicago truncatula HOM05D003515 ORTHO05D004347 1.5e-30 136.3 96 72.9
arahy.Tifrunner.gnm1.ann1.NQ3I2Y Arachis hypogaea HOM05D003515 ORTHO05D004347 1.9e-30 136.0 96 72.9
Eucgr.D00012 Eucalyptus grandis HOM05D003515 ORTHO05D004347 1.9e-30 136.0 96 70.8
TAR624G0550 Trochodendron aralioides HOM05D003515 ORTHO05D004347 1.9e-30 136.0 103 70.9
ECA238G0584 Erigeron canadensis HOM05D003515 ORTHO05D004347 2.5e-30 135.6 90 76.7
Nn7g38343 Nelumbo nucifera HOM05D003515 ORTHO05D004347 2.5e-30 135.6 84 83.3
Dinv07004 Davidia involucrata HOM05D003515 ORTHO05D004347 3.2e-30 135.2 78 88.5
Psat7g087560 Pisum sativum HOM05D003515 ORTHO05D004347 3.2e-30 135.2 96 72.9
PGR004G1774 Punica granatum HOM05D003515 ORTHO05D004347 3.2e-30 135.2 91 75.8
Phvul.002G188000 Phaseolus vulgaris HOM05D003515 ORTHO05D004347 4.2e-30 134.8 96 71.9
HanXRQChr14g0439721 Helianthus annuus HOM05D003515 ORTHO05D004347 5.5e-30 134.4 88 78.4
Cc09_g05170 Coffea canephora HOM05D003515 ORTHO05D004347 7.2e-30 134.0 90 75.6
Nitab4.5_0003190g0020 Nicotiana tabacum HOM05D003515 ORTHO05D004347 7.2e-30 134.0 108 64.8
Oeu008987.4 Olea europaea HOM05D003515 ORTHO05D004347 7.2e-30 134.0 90 75.6
arahy.Tifrunner.gnm1.ann1.ZWBN17 Arachis hypogaea HOM05D003515 ORTHO05D004347 9.4e-30 133.7 96 71.9
CANSAT35G1862 Cannabis sativa HOM05D003515 ORTHO05D004347 9.4e-30 133.7 87 79.3
Migut.M02011 Erythranthe guttata HOM05D003515 ORTHO05D004347 9.4e-30 133.7 103 65.0
RcHm_v2.0_Chr5g0021111 Rosa chinensis HOM05D003515 ORTHO05D004347 9.4e-30 133.7 96 72.9
Sabra03G0110800 Salix brachista HOM05D003515 ORTHO05D004347 9.4e-30 133.7 96 70.8
VMungo0251G3194 Vigna mungo HOM05D003515 ORTHO05D004347 9.4e-30 133.7 96 72.9
Lalb_Chr13g0293411 Lupinus albus HOM05D003515 ORTHO05D004347 1.2e-29 133.3 96 70.8
Nitab4.5_0000254g0140 Nicotiana tabacum HOM05D003515 ORTHO05D004347 1.2e-29 133.3 104 69.2
Carub.0008s0352 Capsella rubella HOM05D003515 ORTHO05D004347 1.6e-29 132.9 91 72.5
TWI63G0015 Tripterygium wilfordii HOM05D003515 ORTHO05D004347 2.1e-29 132.5 91 74.7
GSVIVG01012151001 Vitis vinifera HOM05D003515 ORTHO05D004347 2.1e-29 132.5 89 76.4
AL8G14790 Arabidopsis lyrata HOM05D003515 ORTHO05D004347 2.7e-29 132.1 91 72.5
Ca_18232_v3 Cicer arietinum L. HOM05D003515 ORTHO05D004347 3.6e-29 131.7 106 66.0
CsaV3_6G052970 Cucumis sativus L. HOM05D003515 ORTHO05D004347 3.6e-29 131.7 96 70.8
Solyc01g034150.4 Solanum lycopersicum HOM05D003515 ORTHO05D004347 3.6e-29 131.7 103 68.0
MELO3C007012.2 Cucumis melo HOM05D003515 ORTHO05D004347 4.7e-29 131.3 96 70.8
PSO541G6439 Papaver somniferum HOM05D003515 ORTHO05D004347 6.1e-29 131.0 88 73.9
Sopen01g017810 Solanum pennellii HOM05D003515 ORTHO05D004347 6.1e-29 131.0 103 68.0
PGSC0003DMG401001013 Solanum tuberosum HOM05D003515 ORTHO05D004347 6.1e-29 131.0 89 75.3
AT5G44740 Arabidopsis thaliana HOM05D003515 ORTHO05D004347 8.0e-29 130.6 91 72.5
BcaNung07103 Brassica carinata HOM05D003515 ORTHO05D004347 8.0e-29 130.6 96 67.7
DCAR_007777 Daucus carota HOM05D003515 ORTHO05D004347 1.0e-28 130.2 88 76.1
Sp2g09580 Schrenkiella parvula HOM05D003515 ORTHO05D004347 1.8e-28 129.4 91 71.4
AUR62037879 Chenopodium quinoa HOM05D003515 ORTHO05D004347 2.3e-28 129.0 91 74.7
TPR.G22047 Trifolium pratense HOM05D003515 ORTHO05D004347 2.3e-28 129.0 90 72.2
ClCG01G025730 Citrullus lanatus HOM05D003515 ORTHO05D004347 3.0e-28 128.6 96 69.8
Thhalv10000807m.g Eutrema salsugineum HOM05D003515 ORTHO05D004347 3.0e-28 128.6 91 70.3
EL10Ac7g17242 Beta vulgaris HOM05D003515 ORTHO05D004347 3.9e-28 128.3 91 71.4
CARHR178160 Cardamine hirsuta HOM05D003515 ORTHO05D004347 3.9e-28 128.3 91 71.4
Hma1.2p1_0088F.1_g045246 Hydrangea macrophylla HOM05D003515 ORTHO05D004347 3.9e-28 128.3 85 80.0
Lsat_1_v5_gn_2_60141 Lactuca sativa HOM05D003515 ORTHO05D004347 3.9e-28 128.3 87 74.7
Peaxi162Scf00151g00110 Petunia axillaris HOM05D003515 ORTHO05D004347 3.9e-28 128.3 90 75.6
THA.LOC104812921 Tarenaya hassleriana HOM05D003515 ORTHO05D004347 8.8e-28 127.1 96 67.7
CAN.G391.1 Capsicum annuum HOM05D003515 ORTHO05D004347 1.5e-27 126.3 91 72.5
AUR62040332 Chenopodium quinoa HOM05D003515 ORTHO05D004347 2.0e-27 125.9 90 73.3
Aqoxy2G04030 Aquilegia oxysepala HOM05D003515 ORTHO05D004347 3.3e-27 125.2 91 70.3
Sc05g0004760 Simmondsia chinensis HOM05D003515 ORTHO05D004347 7.4e-27 124.0 88 76.1
Sed0024374 Sechium edule HOM05D003515 ORTHO05D004347 1.3e-26 123.2 76 80.3
Os01g0757800 Oryza sativa ssp. japonica HOM05D003515 ORTHO05D004347 1.7e-26 122.9 103 62.1
SHI28055 Sapria himalayana HOM05D003515 ORTHO05D004347 3.7e-26 121.7 88 72.7
Zm00001eb191750 Zea mays HOM05D003515 ORTHO05D004347 3.7e-26 121.7 102 62.7
BraA06t27567Z Brassica rapa HOM05D003515 ORTHO05D004347 4.8e-26 121.3 101 64.4
SEGI_02016 Sequoiadendron giganteum HOM05D003515 ORTHO05D004347 6.3e-26 120.9 91 65.9
Zm00001eb225590 Zea mays HOM05D003515 ORTHO05D004347 6.3e-26 120.9 102 62.7
ATR0763G272 Amborella trichopoda HOM05D003515 ORTHO05D004347 8.2e-26 120.6 103 63.1
unitig_748.g8071 Utricularia gibba HOM05D003515 ORTHO05D004347 1.1e-25 120.2 89 70.8
Zm00001eb070690 Zea mays HOM05D003515 ORTHO05D004347 1.1e-25 120.2 102 61.8
Zm00001eb303570 Zea mays HOM05D003515 ORTHO05D004347 1.1e-25 120.2 102 61.8
Zm00001eb388450 Zea mays HOM05D003515 ORTHO05D004347 1.1e-25 120.2 102 61.8
Zm00001eb441390 Zea mays HOM05D003515 ORTHO05D004347 1.1e-25 120.2 102 61.8
Zm00001eb441960 Zea mays HOM05D003515 ORTHO05D004347 1.1e-25 120.2 102 61.8
A06p46940 Brassica napus HOM05D003515 ORTHO05D004347 1.4e-25 119.8 95 65.3
BolC7t43303H Brassica oleracea HOM05D003515 ORTHO05D004347 1.4e-25 119.8 95 65.3
C07p27710 Brassica napus HOM05D003515 ORTHO05D004347 2.4e-25 119.0 95 65.3
Zm00001eb440130 Zea mays HOM05D003515 ORTHO05D004347 3.1e-25 118.6 102 60.8
Aa31LG9G8430 Aethionema arabicum HOM05D003515 ORTHO05D004347 7.0e-25 117.5 91 68.1
Zm00001eb152650 Zea mays HOM05D003515 ORTHO05D004347 9.1e-25 117.1 87 67.8
Zm00001eb409210 Zea mays HOM05D003515 ORTHO05D004347 9.1e-25 117.1 87 67.8
Zm00001eb203100 Zea mays HOM05D003515 ORTHO05D004347 1.2e-24 116.7 102 59.8
HPP92_026459 Vanilla planifolia HOM05D003515 ORTHO05D004347 2.6e-24 115.5 87 67.8
Mapoly0100s0031 Marchantia polymorpha HOM05D003515 ORTHO05D004347 5.0e-23 111.3 90 63.3
AagrBONN_evm.TU.Sc2ySwM_228.4437 Anthoceros agrestis HOM05D003515 ORTHO05D004347 8.5e-23 110.5 96 58.3
SGA_v2.0_scaffold298G47708 Striga asiatica HOM05D003515 ORTHO05D004347 2.5e-22 109.0 120 53.3
HPP92_014201 Vanilla planifolia HOM05D003515 ORTHO05D004347 3.2e-22 108.6 83 67.5
SMO118G0165 Selaginella moellendorffii HOM05D003515 ORTHO05D004347 8.0e-21 104.0 88 60.2
CSS0015745 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.8e-20 102.8 69 73.9
Pp3c8_17250 Physcomitrium patens HOM05D003515 ORTHO05D004347 1.5e-19 99.8 104 50.0
BcaNung06821 Brassica carinata HOM05D003515 ORTHO05D004347 8.3e-18 94.0 73 68.5
CBR_g30567 Chara braunii HOM05D003515 ORTHO05D004347 1.8e-17 92.8 67 67.2
Potri.003G152600 Populus trichocarpa HOM05D003515 ORTHO05D004347 2.4e-17 92.4 54 85.2
CSS0033549 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.0e-15 87.0 66 71.2
RcHm_v2.0_Chr4g0406921 Rosa chinensis HOM05D003515 ORTHO05D004347 6.5e-15 84.3 62 69.4
Zm00001eb031780 Zea mays HOM05D003515 ORTHO05D004347 1.2e-13 80.1 68 58.8
Zm00001eb277800 Zea mays HOM05D003515 ORTHO05D004347 6.1e-13 77.8 68 57.4
CDE06G2844 Ceratophyllum demersum HOM05D003515 ORTHO05D004363 4.4e-11 71.6 56 62.5
CDE06G0434 Ceratophyllum demersum HOM05D003515 ORTHO05D004347 1.3e-10 70.1 50 68.0
Cre12.g524150 Chlamydomonas reinhardtii HOM05D003515 ORTHO05D004347 6.3e-10 67.8 72 50.0
AagrBONN_evm.TU.Sc2ySwM_344.1043 Anthoceros agrestis HOM05D003515 ORTHO05D004347 8.3e-10 67.4 69 47.8
PRCOL_00006902 Prasinoderma coloniale HOM05D003515 ORTHO05D004347 2.4e-09 65.9 69 46.4
MCO03G362 Micromonas commoda HOM05D003515 ORTHO05D004347 1.2e-08 63.5 75 48.0
AagrBONN_evm.TU.Sc2ySwM_117.2476 Anthoceros agrestis HOM05D003515 ORTHO05D004347 2.0e-08 62.8 108 38.0
Mapoly0044s0119 Marchantia polymorpha HOM05D003515 ORTHO05D004347 7.7e-08 60.8 70 42.9
Mapoly0226s0007 Marchantia polymorpha HOM05D003515 ORTHO05D004347 7.7e-08 60.8 69 42.0
Pp3c14_23660 Physcomitrium patens HOM05D003515 ORTHO05D004347 7.7e-08 60.8 69 43.5
SMO367G0229 Selaginella moellendorffii HOM05D003515 ORTHO05D004347 1.3e-07 60.1 69 43.5
MSTRG.2876 Avicennia marina HOM05D003515 ORTHO05D004347 5.0e-07 58.2 46 65.2
CBR_g20120 Chara braunii HOM05D003515 ORTHO05D004347 1.5e-06 56.6 94 37.2
Cre07.g338602 Chlamydomonas reinhardtii HOM05D003515 ORTHO05D004347 1.5e-06 56.6 69 43.5
MCO16G582 Micromonas commoda HOM05D003515 ORTHO05D004347 1.5e-06 56.6 69 44.9


User provided reference genes

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