Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 2.0e-84 315.8 172 100.0
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 3.7e-83 311.6 172 98.3
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 4.9e-43 178.3 182 61.0
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 3.2e-42 175.6 180 60.6
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 3.5e-41 172.2 181 59.7
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 4.8e-38 161.8 204 54.9
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 3.5e-33 145.6 181 55.8
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 3.5e-33 145.6 210 51.4
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 3.0e-32 142.5 186 52.2
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 5.1e-32 141.7 177 55.9
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 4.3e-31 138.7 138 60.9
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 7.4e-31 137.9 191 53.4
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 3.7e-30 135.6 172 53.5
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 6.3e-30 134.8 180 53.3
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 1.1e-29 134.0 196 51.0
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 1.1e-29 134.0 180 53.3
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 1.4e-29 133.7 90 80.0
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 1.8e-29 133.3 196 50.0
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 1.8e-29 133.3 180 52.8
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 2.4e-29 132.9 90 78.9
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 6.9e-29 131.3 161 51.6
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 9.0e-29 131.0 173 52.0
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 1.2e-28 130.6 194 45.4
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 1.5e-28 130.2 182 49.5
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 2.0e-28 129.8 194 45.9
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 2.0e-28 129.8 136 55.9
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 2.6e-28 129.4 182 47.3
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 2.6e-28 129.4 144 56.2
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 2.6e-28 129.4 82 84.1
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 3.4e-28 129.0 185 50.8
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 4.5e-28 128.6 125 59.2
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 4.5e-28 128.6 185 47.0
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 5.9e-28 128.3 88 75.0
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 7.6e-28 127.9 173 48.0
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 7.6e-28 127.9 186 51.1
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 1.0e-27 127.5 128 58.6
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 1.0e-27 127.5 101 70.3
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 1.3e-27 127.1 125 60.0
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 1.3e-27 127.1 130 62.3
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 1.7e-27 126.7 88 72.7
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 1.7e-27 126.7 90 75.6
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 2.2e-27 126.3 90 75.6
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 2.9e-27 125.9 90 73.3
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 2.9e-27 125.9 88 77.3
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 3.8e-27 125.6 168 50.0
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 3.8e-27 125.6 188 47.3
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 6.5e-27 124.8 173 49.1
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 8.5e-27 124.4 180 50.6
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 8.5e-27 124.4 180 49.4
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 1.1e-26 124.0 174 48.9
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 1.4e-26 123.6 213 43.7
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 1.4e-26 123.6 100 71.0
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 1.9e-26 123.2 104 67.3
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 1.9e-26 123.2 88 72.7
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 3.2e-26 122.5 88 71.6
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 4.2e-26 122.1 166 50.0
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 4.2e-26 122.1 182 47.3
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 4.2e-26 122.1 130 56.9
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 5.5e-26 121.7 175 48.6
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 5.5e-26 121.7 88 69.3
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 5.5e-26 121.7 88 69.3
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 5.5e-26 121.7 124 61.3
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 7.2e-26 121.3 88 70.5
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 7.2e-26 121.3 184 49.5
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 7.2e-26 121.3 182 47.3
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 7.2e-26 121.3 88 70.5
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 9.3e-26 120.9 88 69.3
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 9.3e-26 120.9 88 69.3
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 9.3e-26 120.9 88 69.3
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 9.3e-26 120.9 126 58.7
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 9.3e-26 120.9 126 58.7
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 1.2e-25 120.6 187 46.0
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 1.2e-25 120.6 88 70.5
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 1.6e-25 120.2 85 74.1
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 1.6e-25 120.2 85 74.1
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 1.6e-25 120.2 88 69.3
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 1.6e-25 120.2 196 43.4
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 2.1e-25 119.8 86 72.1
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 2.1e-25 119.8 86 72.1
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 2.1e-25 119.8 86 72.1
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 2.1e-25 119.8 86 72.1
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 2.7e-25 119.4 86 73.3
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 3.6e-25 119.0 103 62.1
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 6.1e-25 118.2 88 68.2
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 6.1e-25 118.2 166 51.8
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 7.9e-25 117.9 128 58.6
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 7.9e-25 117.9 90 67.8
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 1.0e-24 117.5 174 47.7
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 1.3e-24 117.1 126 54.0
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 1.3e-24 117.1 191 46.1
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 2.3e-24 116.3 173 49.1
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.3e-24 116.3 183 49.7
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 3.0e-24 115.9 182 46.2
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 3.9e-24 115.5 183 49.7
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 3.9e-24 115.5 86 70.9
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 8.7e-24 114.4 86 70.9
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 1.9e-23 113.2 175 48.6
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 1.9e-23 113.2 84 70.2
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 7.4e-23 111.3 88 68.2
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 7.4e-23 111.3 164 45.1
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 9.7e-23 110.9 186 45.7
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 1.3e-22 110.5 77 75.3
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 1.3e-22 110.5 86 66.3
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 4.8e-22 108.6 79 69.6
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 5.3e-21 105.1 73 72.6
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 5.3e-21 105.1 162 43.8
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 6.9e-21 104.8 101 58.4
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 9.1e-21 104.4 76 75.0
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 1.2e-20 104.0 81 67.9
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 1.2e-20 104.0 180 42.8
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 1.0e-19 100.9 102 52.0
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 2.2e-19 99.8 77 64.9
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 2.9e-19 99.4 116 50.0
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 1.2e-17 94.0 92 55.4
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 6.1e-17 91.7 214 36.9
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 6.1e-17 91.7 58 82.8
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 7.9e-17 91.3 80 70.0
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 3.1e-13 79.3 172 36.6
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 7.7e-12 74.7 112 43.8
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 2.9e-11 72.8 59 69.5
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 1.4e-10 70.5 132 42.4
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 1.4e-10 70.5 91 38.5
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 1.0e-08 64.3 42 76.2
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 4.4e-07 58.9 155 36.8
Nn3g16976 Nelumbo nucifera HOM05D005889 ORTHO05D007495 2.2e-06 56.6 125 40.0


User provided reference genes

Program Settings