Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033501 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.9e-98 362.5 176 100.0
CSS0046634 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.9e-98 362.5 176 100.0
CSS0007702 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 5.1e-96 354.4 176 98.3
CSS0022527 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 4.7e-89 331.3 171 96.5
CSS0021914 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 7.4e-87 323.9 171 94.2
CSS0012413 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.8e-77 292.7 172 83.1
Dinv41871 Davidia involucrata HOM05D005203 ORTHO05D006383 1.2e-76 290.0 172 83.7
Rhsim11G0198000 Rhododendron simsii HOM05D005203 ORTHO05D006383 2.0e-76 289.3 164 84.8
Thecc.02G146000 Theobroma cacao HOM05D005203 ORTHO05D006383 3.5e-76 288.5 172 80.8
Atru.chr5.3533 Acer truncatum HOM05D005203 ORTHO05D006383 6.5e-75 284.3 172 79.7
Oeu006117.1 Olea europaea HOM05D005203 ORTHO05D006383 1.5e-74 283.1 170 80.0
Lj5A171G136 Lonicera japonica HOM05D005203 ORTHO05D006383 2.5e-74 282.3 172 78.5
Potri.004G206900 Populus trichocarpa HOM05D005203 ORTHO05D006383 4.2e-74 281.6 163 81.0
GSVIVG01002028001 Vitis vinifera HOM05D005203 ORTHO05D006383 5.5e-74 281.2 172 79.1
CiPaw.06G115500 Carya illinoinensis HOM05D005203 ORTHO05D006383 2.1e-73 279.3 172 77.9
Lj1g0021981 Lotus japonicus HOM05D005203 ORTHO05D006383 2.1e-73 279.3 163 79.1
Gohir.A12G013200 Gossypium hirsutum HOM05D005203 ORTHO05D006383 4.7e-73 278.1 172 76.2
Gohir.D12G014000 Gossypium hirsutum HOM05D005203 ORTHO05D006383 4.7e-73 278.1 172 76.2
Gorai.008G014000 Gossypium raimondii HOM05D005203 ORTHO05D006383 4.7e-73 278.1 172 76.2
Potri.009G168000 Populus trichocarpa HOM05D005203 ORTHO05D006383 4.7e-73 278.1 163 81.0
Prupe.8G179800 Prunus persica HOM05D005203 ORTHO05D006383 6.1e-73 277.7 163 81.0
Cc09_g10810 Coffea canephora HOM05D005203 ORTHO05D006383 8.0e-73 277.3 172 77.3
CANSAT25G3783 Cannabis sativa HOM05D005203 ORTHO05D006383 1.0e-72 276.9 172 77.9
Migut.B00006 Erythranthe guttata HOM05D005203 ORTHO05D006383 1.0e-72 276.9 172 76.2
MD05G1138700 Malus domestica HOM05D005203 ORTHO05D006383 1.0e-72 276.9 163 81.0
Ciclev10028418m.g Citrus clementina HOM05D005203 ORTHO05D006383 1.4e-72 276.6 172 76.7
Dinv14173 Davidia involucrata HOM05D005203 ORTHO05D006383 1.8e-72 276.2 205 70.7
MD10G1141600 Malus domestica HOM05D005203 ORTHO05D006383 2.3e-72 275.8 163 81.0
QL11p056319 Quercus lobata HOM05D005203 ORTHO05D006383 2.3e-72 275.8 172 77.3
MSTRG.19946 Avicennia marina HOM05D005203 ORTHO05D006383 3.0e-72 275.4 172 77.3
Manes.11G110000 Manihot esculenta HOM05D005203 ORTHO05D006383 8.8e-72 273.9 172 76.7
Glyma.04G000400 Glycine max HOM05D005203 ORTHO05D006383 1.2e-71 273.5 163 78.5
Glyma.06G000300 Glycine max HOM05D005203 ORTHO05D006383 1.5e-71 273.1 163 78.5
SalBow1G5214 Salvia bowleyana HOM05D005203 ORTHO05D006383 1.5e-71 273.1 172 76.7
TWI75G1664 Tripterygium wilfordii HOM05D005203 ORTHO05D006383 1.5e-71 273.1 162 79.6
FAN27G1508 Fragaria x ananassa HOM05D005203 ORTHO05D006383 4.4e-71 271.6 163 79.1
Cfa005369 Carpinus fangiana HOM05D005203 ORTHO05D006383 7.5e-71 270.8 170 76.5
Nitab4.5_0000783g0090 Nicotiana tabacum HOM05D005203 ORTHO05D006383 1.3e-70 270.0 170 76.5
CiPaw.05G093000 Carya illinoinensis HOM05D005203 ORTHO05D006383 1.7e-70 269.6 170 77.6
MBI05_g33297_MAGBIO Magnolia biondii HOM05D005203 ORTHO05D006383 2.8e-70 268.9 163 77.9
Sed0018804 Sechium edule HOM05D005203 ORTHO05D006383 2.8e-70 268.9 170 75.9
PGSC0003DMG402014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 3.7e-70 268.5 161 78.3
Peaxi162Scf00362g00132 Petunia axillaris HOM05D005203 ORTHO05D006383 4.8e-70 268.1 170 76.5
Solyc01g112240.4 Solanum lycopersicum HOM05D005203 ORTHO05D006383 4.8e-70 268.1 170 74.7
Sopen01g054300 Solanum pennellii HOM05D005203 ORTHO05D006383 4.8e-70 268.1 170 74.7
CsaV3_7G001910 Cucumis sativus L. HOM05D005203 ORTHO05D006383 1.1e-69 266.9 172 74.4
VMungo1309G0298 Vigna mungo HOM05D005203 ORTHO05D006383 1.1e-69 266.9 163 75.5
FvH4_2g16770 Fragaria vesca HOM05D005203 ORTHO05D006383 1.8e-69 266.2 163 77.9
Eucgr.H04989 Eucalyptus grandis HOM05D005203 ORTHO05D006383 2.4e-69 265.8 161 78.3
arahy.Tifrunner.gnm1.ann1.H6WGQ1 Arachis hypogaea HOM05D005203 ORTHO05D006383 3.1e-69 265.4 163 76.1
PGR042G0992 Punica granatum HOM05D005203 ORTHO05D006383 3.1e-69 265.4 170 75.3
Carub.0007s0018 Capsella rubella HOM05D005203 ORTHO05D006383 4.1e-69 265.0 172 75.0
FAN15G3115 Fragaria x ananassa HOM05D005203 ORTHO05D006383 4.1e-69 265.0 163 77.9
HanXRQChr10g0298431 Helianthus annuus HOM05D005203 ORTHO05D006383 4.1e-69 265.0 172 72.7
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 5.4e-69 264.6 172 73.8
CAN.G1725.2 Capsicum annuum HOM05D005203 ORTHO05D006383 5.4e-69 264.6 170 74.7
RcHm_v2.0_Chr6g0280891 Rosa chinensis HOM05D005203 ORTHO05D006383 5.4e-69 264.6 163 76.7
MELO3C013249.2 Cucumis melo HOM05D005203 ORTHO05D006383 7.0e-69 264.2 173 72.8
Sp7g37480 Schrenkiella parvula HOM05D005203 ORTHO05D006383 7.0e-69 264.2 172 73.8
THA.LOC104824732 Tarenaya hassleriana HOM05D005203 ORTHO05D006383 1.2e-68 263.5 172 73.8
Ca_15273_v3 Cicer arietinum L. HOM05D005203 ORTHO05D006383 1.6e-68 263.1 163 76.1
FAN24G3349 Fragaria x ananassa HOM05D005203 ORTHO05D006383 2.0e-68 262.7 163 77.3
Lalb_Chr08g0246871 Lupinus albus HOM05D005203 ORTHO05D006383 2.0e-68 262.7 165 74.5
Lsat_1_v5_gn_4_71380 Lactuca sativa HOM05D005203 ORTHO05D006383 3.5e-68 261.9 172 70.9
Phvul.009G115600 Phaseolus vulgaris HOM05D005203 ORTHO05D006383 3.5e-68 261.9 162 75.9
Lsat_1_v5_gn_3_48560 Lactuca sativa HOM05D005203 ORTHO05D006383 4.5e-68 261.5 172 72.1
Nn6g31681 Nelumbo nucifera HOM05D005203 ORTHO05D006383 5.9e-68 261.2 162 75.3
Sc18g0005820 Simmondsia chinensis HOM05D005203 ORTHO05D006383 7.7e-68 260.8 172 71.5
Actinidia20576 Actinidia chinensis HOM05D005203 ORTHO05D006383 1.0e-67 260.4 157 78.3
ECA234G1180 Erigeron canadensis HOM05D005203 ORTHO05D006383 1.0e-67 260.4 172 70.9
ECA246G3822 Erigeron canadensis HOM05D005203 ORTHO05D006383 1.0e-67 260.4 172 70.9
HanXRQChr15g0476431 Helianthus annuus HOM05D005203 ORTHO05D006383 1.7e-67 259.6 172 71.5
Eucgr.L00584 Eucalyptus grandis HOM05D005203 ORTHO05D006383 2.3e-67 259.2 156 78.2
Thhalv10025208m.g Eutrema salsugineum HOM05D005203 ORTHO05D006383 2.3e-67 259.2 172 72.1
PSO210G4213 Papaver somniferum HOM05D005203 ORTHO05D006383 2.3e-67 259.2 163 74.8
BcaNung01996 Brassica carinata HOM05D005203 ORTHO05D006383 2.9e-67 258.8 172 74.4
Aqoxy5G00999 Aquilegia oxysepala HOM05D005203 ORTHO05D006383 5.0e-67 258.1 163 76.7
AT4G38240 Arabidopsis thaliana HOM05D005203 ORTHO05D006383 6.5e-67 257.7 172 72.7
PSO170G2598 Papaver somniferum HOM05D005203 ORTHO05D006383 6.5e-67 257.7 163 74.2
Psat5g000480 Pisum sativum HOM05D005203 ORTHO05D006383 6.5e-67 257.7 163 73.6
ClCG02G003410 Citrullus lanatus HOM05D005203 ORTHO05D006383 1.1e-66 256.9 182 69.8
Medtr3g118520 Medicago truncatula HOM05D005203 ORTHO05D006383 2.5e-66 255.8 163 73.6
AL7G10160 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 3.2e-66 255.4 163 74.8
SGA_v2.0_scaffold399G50809 Striga asiatica HOM05D005203 ORTHO05D006383 4.2e-66 255.0 194 67.0
TPR.G38553 Trifolium pratense HOM05D005203 ORTHO05D006383 4.2e-66 255.0 163 73.6
CARHR294030 Cardamine hirsuta HOM05D005203 ORTHO05D006383 4.7e-65 251.5 161 75.2
Os02g0832800 Oryza sativa ssp. japonica HOM05D005203 ORTHO05D006383 8.0e-65 250.8 163 71.8
CDE07G0143 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 2.3e-64 249.2 163 71.2
Zm00001eb421090 Zea mays HOM05D005203 ORTHO05D006383 2.3e-64 249.2 163 71.2
BNapus_Darmor_BZH_scaffold_146p00070 Brassica napus HOM05D005203 ORTHO05D006383 4.0e-64 248.4 172 70.3
BolC7t46794H Brassica oleracea HOM05D005203 ORTHO05D006383 6.8e-64 247.7 161 73.3
BraA06t27778Z Brassica rapa HOM05D005203 ORTHO05D006383 6.8e-64 247.7 161 73.9
HPP92_022155 Vanilla planifolia HOM05D005203 ORTHO05D006383 8.8e-64 247.3 161 70.8
Eucgr.L00583 Eucalyptus grandis HOM05D005203 ORTHO05D006383 2.6e-63 245.7 143 80.4
Cfa005368 Carpinus fangiana HOM05D005203 ORTHO05D006383 7.5e-63 244.2 153 77.8
Cpa.g.c28580 Carica papaya HOM05D005203 ORTHO05D006383 1.1e-61 240.4 153 74.5
Haze_02001 Corylus avellana HOM05D005203 ORTHO05D006383 9.2e-61 237.3 163 73.0
ATR0807G194 Amborella trichopoda HOM05D005203 ORTHO05D006383 3.5e-60 235.3 164 69.5
SMO201G0157 Selaginella moellendorffii HOM05D005203 ORTHO05D006383 2.9e-59 232.3 150 71.3
TAR376G0977 Trochodendron aralioides HOM05D005203 ORTHO05D006383 5.6e-58 228.0 143 74.8
COL.COLO4_19776 Corchorus olitorius HOM05D005203 ORTHO05D006383 2.1e-57 226.1 164 68.9
Aa31LG1G14200 Aethionema arabicum HOM05D005203 ORTHO05D006383 4.0e-56 221.9 146 72.6
vmacro02339 Vaccinium macrocarpon HOM05D005203 ORTHO05D006383 1.3e-54 216.9 327 41.9
Sabra04G0139200 Salix brachista HOM05D005203 ORTHO05D006383 6.4e-54 214.5 163 65.6
arahy.Tifrunner.gnm1.ann1.Z16TJ0 Arachis hypogaea HOM05D005203 ORTHO05D006383 1.6e-52 209.9 163 63.8
Pp3c12_4490 Physcomitrium patens HOM05D005203 ORTHO05D006383 5.0e-51 204.9 150 62.7
Pp3c22_17330 Physcomitrium patens HOM05D005203 ORTHO05D006383 1.1e-48 197.2 150 64.0
HPP92_004948 Vanilla planifolia HOM05D005203 ORTHO05D006383 1.8e-48 196.4 132 70.5
Mapoly0041s0049 Marchantia polymorpha HOM05D005203 ORTHO05D006383 1.1e-45 187.2 148 59.5
AagrBONN_evm.TU.Sc2ySwM_362.2915 Anthoceros agrestis HOM05D005203 ORTHO05D006383 1.4e-45 186.8 152 62.5
Hund06364 Selenicereus undatus HOM05D005203 ORTHO05D006383 4.1e-45 185.3 130 69.2
AUR62010173 Chenopodium quinoa HOM05D005203 ORTHO05D006383 1.9e-42 176.4 123 69.9
GSVIVG01002907001 Vitis vinifera HOM05D005203 ORTHO05D006383 2.5e-42 176.0 93 87.1
CBR_g40811 Chara braunii HOM05D005203 ORTHO05D006383 4.7e-41 171.8 150 55.3
Sabra09G0130500 Salix brachista HOM05D005203 ORTHO05D006383 1.1e-40 170.6 163 57.7
DCAR_026076 Daucus carota HOM05D005203 ORTHO05D006383 4.0e-40 168.7 157 57.3
EL10Ac9g21529 Beta vulgaris HOM05D005203 ORTHO05D006383 1.2e-36 157.1 135 58.5
AUR62013174 Chenopodium quinoa HOM05D005203 ORTHO05D006383 1.1e-34 150.6 169 53.3
TAR628G1330 Trochodendron aralioides HOM05D005203 ORTHO05D006383 3.6e-33 145.6 93 76.3
AL7G13060 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 9.9e-31 137.5 101 67.3
MCO10G329 Micromonas commoda HOM05D005203 ORTHO05D006383 1.7e-30 136.7 154 46.8
CANSAT78G0806 Cannabis sativa HOM05D005203 ORTHO05D006383 1.4e-24 117.1 74 75.7
MCO01G683 Micromonas commoda HOM05D005203 ORTHO05D006383 7.3e-18 94.7 162 35.8
SEGI_16108 Sequoiadendron giganteum HOM05D005203 ORTHO05D006383 2.6e-15 86.3 73 57.5
AL6G14740 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 1.4e-13 80.5 45 82.2


User provided reference genes

Program Settings