Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046633 Camellia sinensis var. sinensis HOM05D004046 ORTHO05D004716 7.8e-45 183.3 87 100.0
Nitab4.5_0003044g0050 Nicotiana tabacum HOM05D004046 ORTHO05D004716 1.2e-32 142.9 85 81.2
Nitab4.5_0011298g0030 Nicotiana tabacum HOM05D004046 ORTHO05D004716 1.2e-32 142.9 85 81.2
Sabra09G0052700 Salix brachista HOM05D004046 ORTHO05D004716 2.0e-32 142.1 82 82.9
SalBow7G4079 Salvia bowleyana HOM05D004046 ORTHO05D004716 3.4e-32 141.4 85 80.0
vmacro01590 Vaccinium macrocarpon HOM05D004046 ORTHO05D004716 3.4e-32 141.4 83 80.7
CSS0016663 Camellia sinensis var. sinensis HOM05D004046 ORTHO05D004716 4.4e-32 141.0 85 77.6
CSS0022787 Camellia sinensis var. sinensis HOM05D004046 ORTHO05D004716 4.4e-32 141.0 85 77.6
CSS0043761 Camellia sinensis var. sinensis HOM05D004046 ORTHO05D004716 4.4e-32 141.0 85 77.6
Potri.009G069800 Populus trichocarpa HOM05D004046 ORTHO05D004716 4.4e-32 141.0 85 78.8
Ah.15g096470 Amaranthus hybridus HOM05D004046 ORTHO05D004716 5.8e-32 140.6 85 78.8
MSTRG.16415 Avicennia marina HOM05D004046 ORTHO05D004716 5.8e-32 140.6 85 80.0
CiPaw.07G032200 Carya illinoinensis HOM05D004046 ORTHO05D004716 5.8e-32 140.6 85 78.8
Phvul.006G077300 Phaseolus vulgaris HOM05D004046 ORTHO05D004716 5.8e-32 140.6 85 78.8
SGA_v2.0_scaffold4G01982 Striga asiatica HOM05D004046 ORTHO05D004716 5.8e-32 140.6 85 80.0
unitig_699.g19663 Utricularia gibba HOM05D004046 ORTHO05D004716 5.8e-32 140.6 85 80.0
MD14G1013000 Malus domestica HOM05D004046 ORTHO05D004716 7.5e-32 140.2 85 78.8
Oeu024971.3 Olea europaea HOM05D004046 ORTHO05D004716 7.5e-32 140.2 78 84.6
VMungo0540G2486 Vigna mungo HOM05D004046 ORTHO05D004716 7.5e-32 140.2 85 77.6
CSS0015916 Camellia sinensis var. sinensis HOM05D004046 ORTHO05D004716 9.8e-32 139.8 76 85.5
Manes.09G093100 Manihot esculenta HOM05D004046 ORTHO05D004716 9.8e-32 139.8 85 78.8
Nn6g34665 Nelumbo nucifera HOM05D004046 ORTHO05D004716 9.8e-32 139.8 79 82.3
TWI53G0737 Tripterygium wilfordii HOM05D004046 ORTHO05D004716 9.8e-32 139.8 85 78.8
GSVIVG01031287001 Vitis vinifera HOM05D004046 ORTHO05D004716 9.8e-32 139.8 85 78.8
ATR0564G175 Amborella trichopoda HOM05D004046 ORTHO05D004716 1.3e-31 139.4 85 77.6
Aqoxy3G02119 Aquilegia oxysepala HOM05D004046 ORTHO05D004716 1.3e-31 139.4 84 79.8
MBI18_g27392_MAGBIO Magnolia biondii HOM05D004046 ORTHO05D004716 1.3e-31 139.4 86 75.6
CANSAT54G1174 Cannabis sativa HOM05D004046 ORTHO05D004716 1.7e-31 139.0 76 85.5
CiPaw.07G032600 Carya illinoinensis HOM05D004046 ORTHO05D004716 1.7e-31 139.0 85 77.6
ClCG02G014740 Citrullus lanatus HOM05D004046 ORTHO05D004716 1.7e-31 139.0 85 77.6
Peaxi162Scf00357g00620 Petunia axillaris HOM05D004046 ORTHO05D004716 1.7e-31 139.0 85 78.8
Prupe.6G309100 Prunus persica HOM05D004046 ORTHO05D004716 1.7e-31 139.0 85 77.6
QL02p093330 Quercus lobata HOM05D004046 ORTHO05D004716 1.7e-31 139.0 85 77.6
QL03p017764 Quercus lobata HOM05D004046 ORTHO05D004716 1.7e-31 139.0 85 77.6
TPR.G18674 Trifolium pratense HOM05D004046 ORTHO05D004716 1.7e-31 139.0 85 77.6
MELO3C004163.2 Cucumis melo HOM05D004046 ORTHO05D004716 2.2e-31 138.7 85 76.5
CsaV3_2G007260 Cucumis sativus L. HOM05D000028 ORTHO05D004716 2.2e-31 138.7 85 76.5
RcHm_v2.0_Chr3g0457701 Rosa chinensis HOM05D004046 ORTHO05D004716 2.2e-31 138.7 76 86.8
Hund21854 Selenicereus undatus HOM05D004046 ORTHO05D004716 2.2e-31 138.7 85 77.6
CiPaw.08G153400 Carya illinoinensis HOM05D004046 ORTHO05D004716 2.9e-31 138.3 76 85.5
Cc02_g35390 Coffea canephora HOM05D004046 ORTHO05D004716 2.9e-31 138.3 85 78.8
Glyma.11G160100 Glycine max HOM05D004046 ORTHO05D004716 2.9e-31 138.3 76 85.5
Glyma.18G053900 Glycine max HOM05D004046 ORTHO05D004716 2.9e-31 138.3 76 85.5
Nn4g23875 Nelumbo nucifera HOM05D004046 ORTHO05D004716 2.9e-31 138.3 85 77.6
Cfa006729 Carpinus fangiana HOM05D004046 ORTHO05D004716 3.7e-31 137.9 76 84.2
Glyma.09G274900 Glycine max HOM05D004046 ORTHO05D004716 3.7e-31 137.9 85 77.6
Sc09g0002540 Simmondsia chinensis HOM05D004046 ORTHO05D004716 3.7e-31 137.9 85 77.6
TWI74G0996 Tripterygium wilfordii HOM05D004046 ORTHO05D004716 3.7e-31 137.9 85 77.6
MSTRG.19613 Avicennia marina HOM05D004046 ORTHO05D004716 4.9e-31 137.5 85 77.6
AUR62000434 Chenopodium quinoa HOM05D004046 ORTHO05D004716 4.9e-31 137.5 85 75.3
AUR62006779 Chenopodium quinoa HOM05D004046 ORTHO05D004716 4.9e-31 137.5 85 75.3
Dinv24482 Davidia involucrata HOM05D004046 ORTHO05D004716 4.9e-31 137.5 85 76.5
Lalb_Chr18g0054271 Lupinus albus HOM05D004046 ORTHO05D004716 4.9e-31 137.5 85 76.5
Medtr5g075330 Medicago truncatula HOM05D004046 ORTHO05D004716 4.9e-31 137.5 85 76.5
Psat2g051160 Pisum sativum HOM05D000114 ORTHO05D000075 4.9e-31 137.5 85 76.5
TPR.G22016 Trifolium pratense HOM05D004046 ORTHO05D004716 4.9e-31 137.5 85 76.5
Actinidia16884 Actinidia chinensis HOM05D004046 ORTHO05D004716 6.4e-31 137.1 76 85.5
Actinidia27689 Actinidia chinensis HOM05D004046 ORTHO05D004716 6.4e-31 137.1 76 85.5
Aqoxy3G03929 Aquilegia oxysepala HOM05D004046 ORTHO05D004716 6.4e-31 137.1 84 78.6
Haze_04031 Corylus avellana HOM05D004046 ORTHO05D004716 6.4e-31 137.1 76 84.2
Lsat_1_v5_gn_4_12481 Lactuca sativa HOM05D004046 ORTHO05D004716 6.4e-31 137.1 76 85.5
Manes.08G080100 Manihot esculenta HOM05D004046 ORTHO05D004716 6.4e-31 137.1 85 77.6
Medtr8g103680 Medicago truncatula HOM05D004046 ORTHO05D004716 6.4e-31 137.1 85 75.3
PSO541G2302 Papaver somniferum HOM05D004046 ORTHO05D004716 6.4e-31 137.1 84 77.4
PSO675G4097 Papaver somniferum HOM05D004046 ORTHO05D004716 6.4e-31 137.1 84 77.4
PSO724G1081 Papaver somniferum HOM05D004046 ORTHO05D004716 6.4e-31 137.1 84 77.4
PSO729G0122 Papaver somniferum HOM05D004046 ORTHO05D004716 6.4e-31 137.1 84 77.4
THA.LOC104823263 Tarenaya hassleriana HOM05D004046 ORTHO05D004716 6.4e-31 137.1 85 76.5
THA.LOC104827016 Tarenaya hassleriana HOM05D004046 ORTHO05D004716 6.4e-31 137.1 85 76.5
Ciclev10012951m.g Citrus clementina HOM05D004046 ORTHO05D004716 8.3e-31 136.7 85 76.5
COL.COLO4_14791 Corchorus olitorius HOM05D004046 ORTHO05D004716 8.3e-31 136.7 85 76.5
Dinv30922 Davidia involucrata HOM05D004046 ORTHO05D004716 8.3e-31 136.7 85 78.8
FAN14G5596 Fragaria x ananassa HOM05D004046 ORTHO05D004716 8.3e-31 136.7 76 84.2
Rhsim11G0098900 Rhododendron simsii HOM05D004046 ORTHO05D004716 8.3e-31 136.7 76 85.5
TAR362G0840 Trochodendron aralioides HOM05D004046 ORTHO05D004716 8.3e-31 136.7 85 77.6
Duzib106G1933 Durio zibethinus HOM05D004046 ORTHO05D004716 1.1e-30 136.3 85 76.5
Gohir.D09G151200 Gossypium hirsutum HOM05D004046 ORTHO05D004716 1.1e-30 136.3 85 76.5
Gorai.006G172500 Gossypium raimondii HOM05D004046 ORTHO05D004716 1.1e-30 136.3 85 76.5
Sed0010909 Sechium edule HOM05D004046 ORTHO05D004716 1.1e-30 136.3 85 75.3
Thecc.05G038900 Theobroma cacao HOM05D004046 ORTHO05D004716 1.1e-30 136.3 85 76.5
CAN.G1076.45 Capsicum annuum HOM05D004046 ORTHO05D004716 1.4e-30 136.0 85 77.6
Migut.B00856 Erythranthe guttata HOM05D004046 ORTHO05D004716 1.4e-30 136.0 76 84.2
FvH4_6g08030 Fragaria vesca HOM05D004046 ORTHO05D004716 1.4e-30 136.0 76 84.2
FAN02G0090 Fragaria x ananassa HOM05D004046 ORTHO05D004716 1.4e-30 136.0 76 84.2
FAN05G0549 Fragaria x ananassa HOM05D004046 ORTHO05D004716 1.4e-30 136.0 76 84.2
Gohir.A11G326900 Gossypium hirsutum HOM05D004046 ORTHO05D004716 1.4e-30 136.0 85 76.5
Gorai.007G376100 Gossypium raimondii HOM05D004046 ORTHO05D004716 1.4e-30 136.0 85 76.5
Solyc01g100840.3 Solanum lycopersicum HOM05D004046 ORTHO05D004716 1.4e-30 136.0 85 77.6
Sopen01g044340 Solanum pennellii HOM05D004046 ORTHO05D004716 1.4e-30 136.0 85 77.6
PGSC0003DMG400002754 Solanum tuberosum HOM05D004046 ORTHO05D004716 1.4e-30 136.0 85 77.6
Hma1.2p1_0052F.1_g030600 Hydrangea macrophylla HOM05D004046 ORTHO05D004716 1.9e-30 135.6 85 77.6
arahy.Tifrunner.gnm1.ann1.9T0Q39 Arachis hypogaea HOM05D004046 ORTHO05D004716 2.4e-30 135.2 84 76.2
arahy.Tifrunner.gnm1.ann1.D04R4W Arachis hypogaea HOM05D004046 ORTHO05D004716 2.4e-30 135.2 84 76.2
EL10Ac4g09510 Beta vulgaris HOM05D004046 ORTHO05D004716 2.4e-30 135.2 85 74.1
Cpa.g.sc188.2 Carica papaya HOM05D004046 ORTHO05D004716 2.4e-30 135.2 85 75.3
HanXRQChr05g0144301 Helianthus annuus HOM05D004046 ORTHO05D004716 2.4e-30 135.2 76 84.2
HanXRQChr14g0432401 Helianthus annuus HOM05D004046 ORTHO05D004716 2.4e-30 135.2 76 84.2
Lj3g0003008 Lotus japonicus HOM05D004046 ORTHO05D004716 2.4e-30 135.2 76 82.9
SEGI_05351 Sequoiadendron giganteum HOM05D004046 ORTHO05D004716 2.4e-30 135.2 80 80.0
HanXRQChr01g0011571 Helianthus annuus HOM05D004046 ORTHO05D004716 4.1e-30 134.4 76 82.9
MBI19_g32693_MAGBIO Magnolia biondii HOM05D004046 ORTHO05D004716 4.1e-30 134.4 76 81.6
Nitab4.5_0022238g0010 Nicotiana tabacum HOM05D004046 ORTHO05D004716 4.1e-30 134.4 76 84.2
Zm00001eb376880 Zea mays HOM05D004046 ORTHO05D004716 4.1e-30 134.4 85 74.1
ECA236G0372 Erigeron canadensis HOM05D004046 ORTHO05D004716 5.4e-30 134.0 76 82.9
Lj6g0018597 Lotus japonicus HOM05D004046 ORTHO05D004716 5.4e-30 134.0 76 80.3
Ca_05705_v3 Cicer arietinum L. HOM05D004046 ORTHO05D004716 7.0e-30 133.7 85 74.1
Ca_30743_v3 Cicer arietinum L. HOM05D004046 ORTHO05D004716 7.0e-30 133.7 85 74.1
HanXRQChr12g0382401 Helianthus annuus HOM05D004046 ORTHO05D004716 9.2e-30 133.3 76 82.9
DCAR_003336 Daucus carota HOM05D004046 ORTHO05D004716 1.2e-29 132.9 76 80.3
MD12G1203200 Malus domestica HOM05D004046 ORTHO05D004716 1.2e-29 132.9 76 81.6
PGR031G1682 Punica granatum HOM05D004046 ORTHO05D004716 1.2e-29 132.9 84 75.0
EL10Ac1g01013 Beta vulgaris HOM05D004046 ORTHO05D004716 1.6e-29 132.5 85 72.9
CDE08G1157 Ceratophyllum demersum HOM05D004046 ORTHO05D004716 1.6e-29 132.5 84 75.0
DCAR_022169 Daucus carota HOM05D004046 ORTHO05D004716 2.1e-29 132.1 76 80.3
Os07g0454700 Oryza sativa ssp. japonica HOM05D004046 ORTHO05D004716 2.1e-29 132.1 85 74.1
PGR083G0204 Punica granatum HOM05D004046 ORTHO05D004716 2.1e-29 132.1 84 75.0
BcaB01g06156 Brassica carinata HOM05D004046 ORTHO05D004716 3.5e-29 131.3 85 75.3
BcaB01g06221 Brassica carinata HOM05D004046 ORTHO05D004716 3.5e-29 131.3 85 75.3
A03p00610 Brassica napus HOM05D004046 ORTHO05D004716 3.5e-29 131.3 85 75.3
A10p33340 Brassica napus HOM05D004046 ORTHO05D004716 3.5e-29 131.3 85 75.3
C03p00880 Brassica napus HOM05D004046 ORTHO05D004716 3.5e-29 131.3 85 75.3
C09p74250 Brassica napus HOM05D004046 ORTHO05D004716 3.5e-29 131.3 85 75.3
BolC9t60158H Brassica oleracea HOM05D004046 ORTHO05D004716 3.5e-29 131.3 85 75.3
BraA10t45365Z Brassica rapa HOM05D004046 ORTHO05D004716 3.5e-29 131.3 85 75.3
AagrBONN_evm.TU.Sc2ySwM_228.3974 Anthoceros agrestis HOM05D004046 ORTHO05D004716 4.6e-29 131.0 84 70.2
Os06g0151300 Oryza sativa ssp. japonica HOM05D004046 ORTHO05D004716 4.6e-29 131.0 84 75.0
Carub.0006s0112 Capsella rubella HOM05D004046 ORTHO05D004716 6.0e-29 130.6 85 74.1
Mapoly0130s0031 Marchantia polymorpha HOM05D004046 ORTHO05D004716 6.0e-29 130.6 80 75.0
Aa31LG1G22470 Aethionema arabicum HOM05D004046 ORTHO05D004716 7.8e-29 130.2 85 74.1
AL6G11540 Arabidopsis lyrata HOM05D004046 ORTHO05D004716 7.8e-29 130.2 85 74.1
AT5G02280 Arabidopsis thaliana HOM05D004046 ORTHO05D004716 7.8e-29 130.2 85 74.1
CARHR211090 Cardamine hirsuta HOM05D004046 ORTHO05D004716 7.8e-29 130.2 85 74.1
Sp6g40170 Schrenkiella parvula HOM05D004046 ORTHO05D004716 7.8e-29 130.2 85 74.1
Duzib093G2058 Durio zibethinus HOM05D004046 ORTHO05D004716 3.0e-28 128.3 85 71.8
Thhalv10022901m.g Eutrema salsugineum HOM05D004046 ORTHO05D004716 3.0e-28 128.3 84 73.8
SMO270G0009 Selaginella moellendorffii HOM05D004046 ORTHO05D004716 3.3e-27 124.8 77 75.3
Gohir.A09G155700 Gossypium hirsutum HOM05D004046 ORTHO05D004716 7.3e-27 123.6 85 72.9
Pp3c15_20530 Physcomitrium patens HOM05D004046 ORTHO05D004716 3.6e-26 121.3 79 68.4
Pp3c9_17970 Physcomitrium patens HOM05D004046 ORTHO05D004716 8.1e-26 120.2 75 72.0
Cre02.g077500 Chlamydomonas reinhardtii HOM05D004046 ORTHO05D004716 8.9e-25 116.7 74 70.3
CBR_g30870 Chara braunii HOM05D004046 ORTHO05D004716 8.3e-23 110.2 76 59.2
Eucgr.H04106 Eucalyptus grandis HOM05D004046 ORTHO05D004716 1.7e-20 102.4 66 71.2
Gorai.003G067000 Gossypium raimondii HOM05D004046 ORTHO05D004716 3.6e-18 94.7 69 63.8
CDE02G1414 Ceratophyllum demersum HOM05D004046 ORTHO05D004716 5.2e-17 90.9 58 72.4
DCAR_022168 Daucus carota HOM05D004046 ORTHO05D004716 2.0e-16 89.0 49 81.6
PRCOL_00000225 Prasinoderma coloniale HOM05D004046 ORTHO05D004716 2.6e-16 88.6 75 53.3
Thhalv10015468m.g Eutrema salsugineum HOM05D004046 ORTHO05D004716 1.7e-15 85.9 58 69.0
Peaxi162Scf00672g00088 Petunia axillaris HOM05D004046 ORTHO05D004716 1.4e-14 82.8 49 77.6
Gohir.D11G230500 Gossypium hirsutum HOM05D004046 ORTHO05D004716 3.2e-14 81.6 58 67.2
Gohir.D07G166050 Gossypium hirsutum HOM05D004046 ORTHO05D004716 5.4e-14 80.9 49 75.5
Gorai.N004900 Gossypium raimondii HOM05D004046 ORTHO05D004716 5.4e-14 80.9 49 75.5
Gorai.010G140600 Gossypium raimondii HOM05D004046 ORTHO05D004716 1.6e-13 79.3 53 71.7
Gohir.D13G093250 Gossypium hirsutum HOM05D004046 ORTHO05D004716 2.1e-13 79.0 58 65.5
GSVIVG01031279001 Vitis vinifera HOM05D004046 ORTHO05D004716 2.1e-13 79.0 45 82.2
GSVIVG01031275001 Vitis vinifera HOM05D004046 ORTHO05D004716 6.0e-13 77.4 44 81.8
GSVIVG01031283001 Vitis vinifera HOM05D004046 ORTHO05D004716 6.0e-13 77.4 44 81.8
Haze_26580 Corylus avellana HOM05D003635 ORTHO05D004283 8.4e-07 57.0 94 40.4


User provided reference genes

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