Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046627 Camellia sinensis var. sinensis HOM05D001287 ORTHO05D109411 6.0e-58 227.3 111 100.0
CSS0008331 Camellia sinensis var. sinensis HOM05D001287 ORTHO05D001226 1.1e-14 83.6 80 53.8
Sabra17G0063800 Salix brachista HOM05D001287 ORTHO05D001226 1.1e-14 83.6 84 51.2
vmacro18335 Vaccinium macrocarpon HOM05D001287 ORTHO05D001226 1.1e-14 83.6 80 53.8
ECA238G1812 Erigeron canadensis HOM05D005888 ORTHO05D001226 3.1e-14 82.0 80 52.5
TAR371G0909 Trochodendron aralioides HOM05D001287 ORTHO05D001226 4.1e-14 81.6 80 52.5
Actinidia05912 Actinidia chinensis HOM05D001287 ORTHO05D001226 5.3e-14 81.3 80 51.2
GSVIVG01001806001 Vitis vinifera HOM05D001287 ORTHO05D001226 5.3e-14 81.3 80 53.8
Aqoxy7G00121 Aquilegia oxysepala HOM05D001287 ORTHO05D001226 6.9e-14 80.9 80 52.5
Potri.017G069600 Populus trichocarpa HOM05D001287 ORTHO05D001226 6.9e-14 80.9 80 52.5
Nn3g16503 Nelumbo nucifera HOM05D001287 ORTHO05D001226 9.0e-14 80.5 80 52.5
Cc07_g00700 Coffea canephora HOM05D001287 ORTHO05D001226 1.2e-13 80.1 80 52.5
Eucgr.J02325 Eucalyptus grandis HOM05D001287 ORTHO05D001226 1.2e-13 80.1 92 46.7
vmacro05949 Vaccinium macrocarpon HOM05D001287 ORTHO05D001226 1.2e-13 80.1 94 48.9
HanXRQChr14g0450681 Helianthus annuus HOM05D001287 ORTHO05D001226 1.5e-13 79.7 80 51.2
PSO017G5670 Papaver somniferum HOM05D001287 ORTHO05D001226 1.5e-13 79.7 80 51.2
PSO478G3579 Papaver somniferum HOM05D001287 ORTHO05D001226 1.5e-13 79.7 80 51.2
Sed0006933 Sechium edule HOM05D001287 ORTHO05D001226 1.5e-13 79.7 92 46.7
TWI12G0558 Tripterygium wilfordii HOM05D001287 ORTHO05D001226 1.5e-13 79.7 80 53.8
HPP92_001416 Vanilla planifolia HOM05D001287 ORTHO05D001226 1.5e-13 79.7 78 51.3
RcHm_v2.0_Chr2g0143071 Rosa chinensis HOM05D001287 ORTHO05D001226 2.0e-13 79.3 80 52.5
Dinv25667 Davidia involucrata HOM05D001287 ORTHO05D001226 2.6e-13 79.0 80 50.0
QL02p071668 Quercus lobata HOM05D001287 ORTHO05D001226 2.6e-13 79.0 80 52.5
Atru.chr6.2538 Acer truncatum HOM05D001287 ORTHO05D001226 3.4e-13 78.6 80 51.2
CAN.G199.37 Capsicum annuum HOM05D001287 ORTHO05D001226 3.4e-13 78.6 80 52.5
Haze_14859 Corylus avellana HOM05D001287 ORTHO05D001226 3.4e-13 78.6 80 51.2
HanXRQChr07g0198281 Helianthus annuus HOM05D001287 ORTHO05D001226 3.4e-13 78.6 80 51.2
Lsat_1_v5_gn_2_94120 Lactuca sativa HOM05D001287 ORTHO05D001226 3.4e-13 78.6 80 50.0
CANSAT64G2102 Cannabis sativa HOM05D001287 ORTHO05D001226 4.5e-13 78.2 80 52.5
Lju41A51T46 Lonicera japonica HOM05D001287 ORTHO05D001226 4.5e-13 78.2 80 51.2
Cfa007241 Carpinus fangiana HOM05D001287 ORTHO05D001226 5.9e-13 77.8 80 51.2
CiPaw.03G054200 Carya illinoinensis HOM05D001287 ORTHO05D001226 5.9e-13 77.8 80 50.0
ClCG05G011890 Citrullus lanatus HOM05D001287 ORTHO05D001226 5.9e-13 77.8 80 51.2
Ciclev10015123m.g Citrus clementina HOM05D001287 ORTHO05D001226 5.9e-13 77.8 94 46.8
COL.COLO4_17174 Corchorus olitorius HOM05D001287 ORTHO05D001226 5.9e-13 77.8 80 52.5
MELO3C023784.2 Cucumis melo HOM05D001287 ORTHO05D001226 5.9e-13 77.8 80 51.2
CsaV3_3G020520 Cucumis sativus L. HOM05D001287 ORTHO05D001226 5.9e-13 77.8 80 51.2
RcHm_v2.0_Chr2g0175311 Rosa chinensis HOM05D001287 ORTHO05D001226 5.9e-13 77.8 80 52.5
Sed0024857 Sechium edule HOM05D001287 ORTHO05D001226 5.9e-13 77.8 92 44.6
Thecc.04G033900 Theobroma cacao HOM05D001287 ORTHO05D001226 5.9e-13 77.8 80 52.5
CSS0000603 Camellia sinensis var. sinensis HOM05D001287 ORTHO05D001226 7.6e-13 77.4 138 42.0
Duzib187G1463 Durio zibethinus HOM05D001287 ORTHO05D001226 7.6e-13 77.4 80 52.5
Peaxi162Scf00075g01933 Petunia axillaris HOM05D001287 ORTHO05D001226 7.6e-13 77.4 80 52.5
Hund24910 Selenicereus undatus HOM05D001287 ORTHO05D001226 7.6e-13 77.4 80 52.5
MD09G1012900 Malus domestica HOM05D001287 ORTHO05D001226 1.0e-12 77.0 80 51.2
MD17G1013500 Malus domestica HOM05D001287 ORTHO05D001226 1.3e-12 76.6 80 51.2
QL10p004071 Quercus lobata HOM05D001287 ORTHO05D001226 1.3e-12 76.6 80 51.2
Rhsim08G0043800 Rhododendron simsii HOM05D001287 ORTHO05D001226 1.3e-12 76.6 80 51.2
Solyc06g065580.3 Solanum lycopersicum HOM05D001287 ORTHO05D001226 1.3e-12 76.6 92 45.7
Sopen06g024100 Solanum pennellii HOM05D001287 ORTHO05D001226 1.3e-12 76.6 92 45.7
PGSC0003DMG400026129 Solanum tuberosum HOM05D001287 ORTHO05D001226 1.3e-12 76.6 92 45.7
Gohir.A09G035100 Gossypium hirsutum HOM05D001287 ORTHO05D001226 1.7e-12 76.3 80 51.2
Gohir.D09G036000 Gossypium hirsutum HOM05D001287 ORTHO05D001226 1.7e-12 76.3 80 51.2
Gorai.006G041100 Gossypium raimondii HOM05D001287 ORTHO05D001226 1.7e-12 76.3 80 51.2
Os08g0530000 Oryza sativa ssp. japonica HOM05D001287 ORTHO05D001226 1.7e-12 76.3 80 48.8
BcaB06g27570 Brassica carinata HOM05D001287 ORTHO05D001226 2.2e-12 75.9 92 46.7
A04p13930 Brassica napus HOM05D001287 ORTHO05D001226 2.2e-12 75.9 92 46.7
BraA04t17058Z Brassica rapa HOM05D001287 ORTHO05D001226 2.2e-12 75.9 92 46.7
Cfa018838 Carpinus fangiana HOM05D001287 ORTHO05D001226 2.2e-12 75.9 80 50.0
FAN02G1279 Fragaria x ananassa HOM05D001287 ORTHO05D001226 2.2e-12 75.9 80 51.2
FAN05G3807 Fragaria x ananassa HOM05D001287 ORTHO05D001226 2.2e-12 75.9 80 51.2
FAN09G3185 Fragaria x ananassa HOM05D001287 ORTHO05D001226 2.2e-12 75.9 80 51.2
Sc07g0004140 Simmondsia chinensis HOM05D001287 ORTHO05D001226 2.2e-12 75.9 80 50.0
MSTRG.3082 Avicennia marina HOM05D001287 ORTHO05D001226 2.9e-12 75.5 80 50.0
Prupe.3G304300 Prunus persica HOM05D001287 ORTHO05D001226 2.9e-12 75.5 80 51.2
SalBow4G2777 Salvia bowleyana HOM05D001287 ORTHO05D001226 2.9e-12 75.5 80 50.0
SalBow4G2799 Salvia bowleyana HOM05D001287 ORTHO05D001226 2.9e-12 75.5 80 50.0
AL7G48700 Arabidopsis lyrata HOM05D001287 ORTHO05D001226 3.8e-12 75.1 80 51.2
AT5G40870 Arabidopsis thaliana HOM05D001287 ORTHO05D001226 3.8e-12 75.1 80 51.2
Thhalv10027737m.g Eutrema salsugineum HOM05D001287 ORTHO05D001226 3.8e-12 75.1 80 51.2
FvH4_6g53220 Fragaria vesca HOM05D001287 ORTHO05D001226 3.8e-12 75.1 80 51.2
FAN14G2453 Fragaria x ananassa HOM05D001287 ORTHO05D001226 3.8e-12 75.1 80 51.2
Lalb_Chr24g0403351 Lupinus albus HOM05D001287 ORTHO05D001226 3.8e-12 75.1 80 50.0
Pp3c21_7820 Physcomitrium patens HOM05D001287 ORTHO05D001226 3.8e-12 75.1 79 46.8
Aa31LG1G13610 Aethionema arabicum HOM05D001287 ORTHO05D001226 5.0e-12 74.7 80 51.2
BcaC02g08996 Brassica carinata HOM05D001287 ORTHO05D001226 5.0e-12 74.7 92 45.7
C04p47710 Brassica napus HOM05D001287 ORTHO05D001226 5.0e-12 74.7 92 45.7
BolC4t26371H Brassica oleracea HOM05D001287 ORTHO05D001226 5.0e-12 74.7 92 45.7
Carub.0007s3463 Capsella rubella HOM05D001287 ORTHO05D001226 5.0e-12 74.7 80 50.0
Potri.001G332100 Populus trichocarpa HOM05D001287 ORTHO05D001226 5.0e-12 74.7 80 48.8
unitig_21.g20478 Utricularia gibba HOM05D001287 ORTHO05D001226 5.0e-12 74.7 80 51.2
GSVIVG01008517001 Vitis vinifera HOM05D001287 ORTHO05D001226 5.0e-12 74.7 80 48.8
Sp7g01060 Schrenkiella parvula HOM05D001287 ORTHO05D001226 6.5e-12 74.3 80 51.2
Hund20630 Selenicereus undatus HOM05D001287 ORTHO05D001226 6.5e-12 74.3 80 50.0
arahy.Tifrunner.gnm1.ann1.4C5S2A Arachis hypogaea HOM05D001287 ORTHO05D001226 8.5e-12 73.9 80 48.8
arahy.Tifrunner.gnm1.ann1.56Z8NU Arachis hypogaea HOM05D001287 ORTHO05D001226 8.5e-12 73.9 80 48.8
Haze_07232 Corylus avellana HOM05D001287 ORTHO05D001226 8.5e-12 73.9 78 50.0
Lj4g0026379 Lotus japonicus HOM05D001287 ORTHO05D001226 8.5e-12 73.9 99 45.5
Lalb_Chr21g0317511 Lupinus albus HOM05D001287 ORTHO05D001226 8.5e-12 73.9 89 46.1
Sed0022182 Sechium edule HOM05D001287 ORTHO05D001226 8.5e-12 73.9 80 48.8
THA.LOC104805332 Tarenaya hassleriana HOM05D001287 ORTHO05D001226 8.5e-12 73.9 80 51.2
Medtr4g103620 Medicago truncatula HOM05D001287 ORTHO05D001226 1.1e-11 73.6 94 41.5
ATR0561G129 Amborella trichopoda HOM05D001287 ORTHO05D001226 1.4e-11 73.2 80 50.0
CiPaw.11G009000 Carya illinoinensis HOM05D001287 ORTHO05D001226 1.4e-11 73.2 80 48.8
Gohir.A10G159300 Gossypium hirsutum HOM05D001287 ORTHO05D001226 1.4e-11 73.2 80 48.8
Lj1g0009104 Lotus japonicus HOM05D001287 ORTHO05D001226 1.4e-11 73.2 89 46.1
Sc03g0006620 Simmondsia chinensis HOM05D001287 ORTHO05D001226 1.4e-11 73.2 80 48.8
PGR083G0884 Punica granatum HOM05D001287 ORTHO05D001226 1.9e-11 72.8 80 47.5
HPP92_006999 Vanilla planifolia HOM05D001287 ORTHO05D001226 1.9e-11 72.8 80 46.2
Gohir.A07G227400 Gossypium hirsutum HOM05D001287 ORTHO05D001226 3.2e-11 72.0 92 43.5
Gohir.D07G234500 Gossypium hirsutum HOM05D001287 ORTHO05D001226 3.2e-11 72.0 80 48.8
Gorai.001G270100 Gossypium raimondii HOM05D001287 ORTHO05D001226 3.2e-11 72.0 80 48.8
Oeu011961.1 Olea europaea HOM05D001287 ORTHO05D001226 3.2e-11 72.0 80 48.8
SMO240G0042 Selaginella moellendorffii HOM05D001287 ORTHO05D001226 3.2e-11 72.0 80 48.8
SMO340G0126 Selaginella moellendorffii HOM05D001287 ORTHO05D001226 3.2e-11 72.0 80 48.8
TPR.G18597 Trifolium pratense HOM05D001287 ORTHO05D001226 3.2e-11 72.0 94 42.6
Zm00001eb102380 Zea mays HOM05D001287 ORTHO05D001226 3.2e-11 72.0 80 46.2
Cpa.g.sc701.3 Carica papaya HOM05D001287 ORTHO05D001226 4.2e-11 71.6 93 43.0
Nitab4.5_0002000g0070 Nicotiana tabacum HOM05D001287 ORTHO05D001226 4.2e-11 71.6 65 55.4
Nitab4.5_0007227g0050 Nicotiana tabacum HOM05D001287 ORTHO05D001226 4.2e-11 71.6 65 55.4
Phvul.003G210100 Phaseolus vulgaris HOM05D001287 ORTHO05D001226 4.2e-11 71.6 99 43.4
THA.LOC104825615 Tarenaya hassleriana HOM05D001287 ORTHO05D001226 4.2e-11 71.6 80 50.0
BcaC03g17431 Brassica carinata HOM05D001287 ORTHO05D001226 5.5e-11 71.2 92 44.6
A02p35160 Brassica napus HOM05D001287 ORTHO05D001226 5.5e-11 71.2 92 44.6
C02p53810 Brassica napus HOM05D001287 ORTHO05D001226 5.5e-11 71.2 92 44.6
BolC2t11448H Brassica oleracea HOM05D001287 ORTHO05D001226 5.5e-11 71.2 92 44.6
BraA02t08523Z Brassica rapa HOM05D001287 ORTHO05D001226 5.5e-11 71.2 92 44.6
Migut.F00074 Erythranthe guttata HOM05D001287 ORTHO05D001226 5.5e-11 71.2 80 47.5
A06p41420 Brassica napus HOM05D001287 ORTHO05D001226 7.2e-11 70.9 92 42.4
BolC7t44138H Brassica oleracea HOM05D001287 ORTHO05D001226 7.2e-11 70.9 92 42.4
BraA06t27068Z Brassica rapa HOM05D001287 ORTHO05D001226 7.2e-11 70.9 92 42.4
Zm00001eb036480 Zea mays HOM05D001287 ORTHO05D001226 7.2e-11 70.9 92 39.1
EL10Ac2g03223 Beta vulgaris HOM05D001287 ORTHO05D001226 9.4e-11 70.5 80 48.8
Os09g0505800 Oryza sativa ssp. japonica HOM05D001287 ORTHO05D001226 9.4e-11 70.5 80 46.2
Ca_00912_v3 Cicer arietinum L. HOM05D001287 ORTHO05D001226 1.2e-10 70.1 94 40.4
DCAR_011317 Daucus carota HOM05D001287 ORTHO05D001226 1.2e-10 70.1 80 48.8
Manes.15G159500 Manihot esculenta HOM05D001287 ORTHO05D001226 1.2e-10 70.1 80 48.8
BcaC06g33845 Brassica carinata HOM05D001287 ORTHO05D001226 1.6e-10 69.7 92 42.4
BcaNung06418 Brassica carinata HOM05D001287 ORTHO05D001226 1.6e-10 69.7 92 42.4
CARHR213630 Cardamine hirsuta HOM05D001287 ORTHO05D001226 1.6e-10 69.7 92 43.5
CDE02G1042 Ceratophyllum demersum HOM05D001287 ORTHO05D001226 1.6e-10 69.7 73 47.9
Phvul.001G114500 Phaseolus vulgaris HOM05D001287 ORTHO05D001226 1.6e-10 69.7 80 47.5
VMungo1215G2400 Vigna mungo HOM05D001287 ORTHO05D001226 1.6e-10 69.7 85 48.2
Aa31LG2G5200 Aethionema arabicum HOM05D001287 ORTHO05D001226 2.1e-10 69.3 92 41.3
BcaB07g30183 Brassica carinata HOM05D001287 ORTHO05D001226 2.1e-10 69.3 92 43.5
C07p36220 Brassica napus HOM05D001287 ORTHO05D001226 2.1e-10 69.3 92 41.3
Glyma.16G058200 Glycine max HOM05D001287 ORTHO05D001226 2.1e-10 69.3 80 47.5
Glyma.17G129000 Glycine max HOM05D001287 ORTHO05D001226 2.1e-10 69.3 99 42.4
Glyma.19G089100 Glycine max HOM05D001287 ORTHO05D001226 2.1e-10 69.3 80 47.5
Ca_02736_v3 Cicer arietinum L. HOM05D001287 ORTHO05D001226 2.7e-10 68.9 80 47.5
Ca_30931_v3 Cicer arietinum L. HOM05D001287 ORTHO05D001226 2.7e-10 68.9 80 47.5
Hma1.2p1_0279F.1_g112630 Hydrangea macrophylla HOM05D001287 ORTHO05D001226 2.7e-10 68.9 75 49.3
Pp3c15_5700 Physcomitrium patens HOM05D001287 ORTHO05D001226 2.7e-10 68.9 80 43.8
Psat0s3053g0120 Pisum sativum HOM05D001287 ORTHO05D001226 2.7e-10 68.9 94 38.3
Psat7g264200 Pisum sativum HOM05D001287 ORTHO05D001226 2.7e-10 68.9 89 42.7
SGA_v2.0_scaffold44G16908 Striga asiatica HOM05D001287 ORTHO05D001226 2.7e-10 68.9 80 46.2
VMungo1383G1651 Vigna mungo HOM05D001287 ORTHO05D001226 2.7e-10 68.9 80 47.5
AT3G27190 Arabidopsis thaliana HOM05D001287 ORTHO05D001226 3.6e-10 68.6 92 41.3
Lalb_Chr02g0157741 Lupinus albus HOM05D001287 ORTHO05D001226 3.6e-10 68.6 80 46.2
Pp3c18_8810 Physcomitrium patens HOM05D001287 ORTHO05D001226 3.6e-10 68.6 80 43.8
Sp2g16320 Schrenkiella parvula HOM05D001287 ORTHO05D001226 3.6e-10 68.6 92 41.3
AL5G16310 Arabidopsis lyrata HOM05D001287 ORTHO05D001226 4.6e-10 68.2 92 41.3
Pp3c9_5950 Physcomitrium patens HOM05D001287 ORTHO05D001226 4.6e-10 68.2 80 41.2
TPR.G2799 Trifolium pratense HOM05D001287 ORTHO05D001226 4.6e-10 68.2 89 42.7
AUR62037771 Chenopodium quinoa HOM05D001287 ORTHO05D001226 6.1e-10 67.8 73 50.7
arahy.Tifrunner.gnm1.ann1.YU8K39 Arachis hypogaea HOM05D001287 ORTHO05D001226 7.9e-10 67.4 80 46.2
Thhalv10004106m.g Eutrema salsugineum HOM05D001287 ORTHO05D001226 7.9e-10 67.4 92 41.3
Mapoly0101s0040 Marchantia polymorpha HOM05D001287 ORTHO05D001226 1.0e-09 67.0 80 43.8
Medtr7g029450 Medicago truncatula HOM05D001287 ORTHO05D001226 1.0e-09 67.0 80 45.0
Carub.0005s0542 Capsella rubella HOM05D001287 ORTHO05D001226 1.4e-09 66.6 92 40.2
Thecc.03G127200 Theobroma cacao HOM05D001287 ORTHO05D001226 1.4e-09 66.6 78 46.2
arahy.Tifrunner.gnm1.ann1.D0J2JD Arachis hypogaea HOM05D001287 ORTHO05D001226 1.8e-09 66.2 80 45.0
Oeu058776.2 Olea europaea HOM05D001287 ORTHO05D001226 1.8e-09 66.2 79 44.3
Sabra16G0213000 Salix brachista HOM05D001287 ORTHO05D001226 2.3e-09 65.9 73 46.6
DCAR_015092 Daucus carota HOM05D001287 ORTHO05D001226 3.9e-09 65.1 65 50.8
CARHR148390 Cardamine hirsuta HOM05D001287 ORTHO05D001226 1.1e-08 63.5 92 38.0
SGA_v2.0_scaffold18G08530 Striga asiatica HOM05D001287 ORTHO05D001226 4.3e-08 61.6 65 47.7
AagrBONN_evm.TU.Sc2ySwM_368.697 Anthoceros agrestis HOM05D001287 ORTHO05D001226 7.4e-08 60.8 80 38.8
CDE02G1686 Ceratophyllum demersum HOM05D001287 ORTHO05D001226 7.4e-08 60.8 78 44.9
Pp3c22_13790 Physcomitrium patens HOM05D001287 ORTHO05D001226 2.2e-07 59.3 92 35.9
Phvul.004G066400 Phaseolus vulgaris HOM05D001287 ORTHO05D001226 5.3e-06 54.7 99 34.3
SEGI_07688 Sequoiadendron giganteum HOM05D001287 ORTHO05D001226 9.1e-06 53.9 92 34.8


User provided reference genes

Program Settings