Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046601 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.6e-39 164.9 78 100.0
CSS0003706 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.5e-23 112.5 74 79.7
RcHm_v2.0_Chr3g0453691 Rosa chinensis HOM05D000002 ORTHO05D000001 2.4e-13 78.6 56 60.7
RcHm_v2.0_Chr2g0154461 Rosa chinensis HOM05D000002 ORTHO05D000001 7.0e-13 77.0 56 58.9
RcHm_v2.0_Chr7g0198271 Rosa chinensis HOM05D000002 ORTHO05D000001 9.2e-13 76.6 56 60.7
CSS0017873 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.7e-12 75.1 56 60.7
QL09p034601 Quercus lobata HOM05D000002 ORTHO05D000001 1.0e-11 73.2 56 62.5
CSS0017329 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.9e-11 71.6 56 57.1
Hma1.2p1_1498F.1_g287120 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.9e-11 71.6 56 60.7
CSS0008869 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.9e-11 71.2 58 62.1
Hma1.2p1_0184F.1_g081330 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 5.0e-11 70.9 58 60.3
Hma1.2p1_0774F.1_g216290 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 5.0e-11 70.9 56 60.7
QL11p047249 Quercus lobata HOM05D000002 ORTHO05D000001 5.0e-11 70.9 56 60.7
Hma1.2p1_1719F.1_g299230 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 8.6e-11 70.1 56 57.1
Nn7g37205 Nelumbo nucifera HOM05D000002 ORTHO05D000001 5.6e-10 67.4 56 55.4
TAR156G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 5.6e-10 67.4 56 51.8
CSS0002225 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.3e-10 67.0 56 55.4
CSS0015647 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.3e-10 67.0 56 55.4
CSS0027984 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.3e-10 67.0 56 55.4
CSS0047919 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.3e-10 67.0 56 55.4
Nn5g30083 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.2e-09 66.2 56 53.6
CSS0027562 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.1e-09 65.5 56 53.6
FvH4_1g02351 Fragaria vesca HOM05D000002 ORTHO05D000001 3.6e-09 64.7 56 55.4
Hma1.2p1_0774F.1_g216300 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.6e-09 64.7 55 58.2
CSS0009222 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.2e-09 63.9 33 93.9
RcHm_v2.0_Chr5g0056061 Rosa chinensis HOM05D000002 ORTHO05D000001 6.2e-09 63.9 61 49.2
MD01G1101100 Malus domestica HOM05D000002 ORTHO05D000001 8.0e-09 63.5 56 60.7
CSS0036210 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.0e-08 63.2 56 50.0
Nn1g02421 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.4e-08 62.8 56 53.6
Hma1.2p1_0176F.1_g077340 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.3e-08 62.0 55 52.7
Hma1.2p1_2049F.1_g312480 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.3e-08 62.0 55 52.7
FvH4_6g43842 Fragaria vesca HOM05D000002 ORTHO05D000001 5.2e-08 60.8 58 51.7
RcHm_v2.0_Chr4g0409151 Rosa chinensis HOM05D000002 ORTHO05D000001 5.2e-08 60.8 57 50.9
CSS0042948 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.9e-08 60.1 56 50.0
FvH4_7g13272 Fragaria vesca HOM05D000002 ORTHO05D000001 1.2e-07 59.7 56 46.4
Nn1g02200 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.2e-07 59.7 63 47.6
CSS0042636 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.5e-07 59.3 52 55.8
SEGI_07554 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 2.0e-07 58.9 60 50.0
ECA246G4670 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.5e-07 57.0 56 42.9
ECA232G0373 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.8e-07 56.6 56 42.9
CSS0012713 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.3e-06 56.2 55 50.9
CSS0023125 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.3e-06 56.2 55 50.9
FvH4_3g12332 Fragaria vesca HOM05D000002 ORTHO05D000001 2.9e-06 55.1 58 44.8
FvH4_4g30902 Fragaria vesca HOM05D000002 ORTHO05D000001 2.9e-06 55.1 58 44.8
Nn1g06669 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.9e-06 55.1 55 49.1
SHI52580 Sapria himalayana HOM05D000002 ORTHO05D000001 2.9e-06 55.1 52 53.8
SHI53128 Sapria himalayana HOM05D000002 ORTHO05D000001 2.9e-06 55.1 52 53.8
SHI54688 Sapria himalayana HOM05D000002 ORTHO05D000001 2.9e-06 55.1 52 53.8
SHI54989 Sapria himalayana HOM05D000002 ORTHO05D000001 2.9e-06 55.1 52 53.8
CSS0016955 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.7e-06 54.7 44 54.5
CSS0037187 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.7e-06 54.7 44 54.5
CSS0045643 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.7e-06 54.7 53 50.9
SHI05323 Sapria himalayana HOM05D000002 ORTHO05D000001 4.9e-06 54.3 49 55.1
Rhsim09G0033700 Rhododendron simsii HOM05D000002 ORTHO05D000001 6.4e-06 53.9 55 49.1
RcHm_v2.0_Chr7g0237911 Rosa chinensis HOM05D000002 ORTHO05D000001 6.4e-06 53.9 55 47.3
Sopen01g009150 Solanum pennellii HOM05D000002 ORTHO05D000001 8.3e-06 53.5 57 50.9


User provided reference genes

Program Settings