Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046599 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D004184 1.1e-50 203.0 103 100.0
AUR62004319 Chenopodium quinoa HOM05D001826 ORTHO05D004184 2.0e-39 165.6 118 77.1
Prupe.2G162700 Prunus persica HOM05D001826 ORTHO05D004184 5.8e-39 164.1 121 74.4
MD01G1053700 Malus domestica HOM05D001826 ORTHO05D004184 9.8e-39 163.3 120 75.0
Ca_07891_v3 Cicer arietinum L. HOM05D001826 ORTHO05D004184 1.3e-38 162.9 120 75.0
Cc02_g37680 Coffea canephora HOM05D001826 ORTHO05D004184 1.3e-38 162.9 120 75.0
Dinv32449 Davidia involucrata HOM05D001826 ORTHO05D004184 1.3e-38 162.9 120 74.2
Lsat_1_v5_gn_3_136621 Lactuca sativa HOM05D001826 ORTHO05D004184 1.3e-38 162.9 120 75.0
Lalb_Chr19g0127041 Lupinus albus HOM05D001826 ORTHO05D004184 1.3e-38 162.9 120 76.7
MBI17_g08175_MAGBIO Magnolia biondii HOM05D005566 ORTHO05D004184 1.3e-38 162.9 120 75.0
Sed0024442 Sechium edule HOM05D001826 ORTHO05D004184 1.3e-38 162.9 120 76.7
Hund16940 Selenicereus undatus HOM05D001826 ORTHO05D004184 1.3e-38 162.9 120 75.0
arahy.Tifrunner.gnm1.ann1.8F4Z70 Arachis hypogaea HOM05D001826 ORTHO05D004184 1.7e-38 162.5 120 75.0
arahy.Tifrunner.gnm1.ann1.SLD8LW Arachis hypogaea HOM05D001826 ORTHO05D004184 1.7e-38 162.5 120 75.0
CSS0021518 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D004184 1.7e-38 162.5 120 75.0
CANSAT56G1923 Cannabis sativa HOM05D001826 ORTHO05D004184 1.7e-38 162.5 120 75.0
Cpa.g.sc18.224 Carica papaya HOM05D001826 ORTHO05D004184 1.7e-38 162.5 120 75.0
ClCG05G001700 Citrullus lanatus HOM05D001826 ORTHO05D004184 1.7e-38 162.5 120 75.0
COL.COLO4_12675 Corchorus olitorius HOM05D001826 ORTHO05D004184 1.7e-38 162.5 120 76.7
MELO3C006129.2 Cucumis melo HOM05D001826 ORTHO05D004184 1.7e-38 162.5 120 75.0
CsaV3_3G009090 Cucumis sativus L. HOM05D001826 ORTHO05D004184 1.7e-38 162.5 120 75.0
Gohir.A12G105000 Gossypium hirsutum HOM05D001826 ORTHO05D004184 1.7e-38 162.5 120 75.0
Gohir.D12G108900 Gossypium hirsutum HOM05D001826 ORTHO05D004184 1.7e-38 162.5 120 75.0
Gorai.008G118000 Gossypium raimondii HOM05D001826 ORTHO05D004184 1.7e-38 162.5 120 75.0
Lj1g0018622 Lotus japonicus HOM05D001826 ORTHO05D004184 1.7e-38 162.5 120 75.8
Manes.05G037400 Manihot esculenta HOM05D001826 ORTHO05D004184 1.7e-38 162.5 120 75.0
Nn6g33530 Nelumbo nucifera HOM05D001826 ORTHO05D004184 1.7e-38 162.5 120 75.0
Psat3g110880 Pisum sativum HOM05D001826 ORTHO05D004184 1.7e-38 162.5 120 75.0
QL08p049532 Quercus lobata HOM05D001826 ORTHO05D004184 1.7e-38 162.5 120 75.0
Rhsim07G0018000 Rhododendron simsii HOM05D001826 ORTHO05D004184 1.7e-38 162.5 120 75.0
Thecc.01G363300 Theobroma cacao HOM05D001826 ORTHO05D004184 1.7e-38 162.5 120 75.0
GSVIVG01026846001 Vitis vinifera HOM05D001826 ORTHO05D004184 1.7e-38 162.5 120 75.0
Aqoxy5G04023 Aquilegia oxysepala HOM05D001826 ORTHO05D004184 2.2e-38 162.2 120 75.8
Ciclev10018563m.g Citrus clementina HOM05D001826 ORTHO05D004184 2.2e-38 162.2 120 75.8
Eucgr.E00180 Eucalyptus grandis HOM05D001826 ORTHO05D004184 2.2e-38 162.2 120 74.2
FAN03G3317 Fragaria x ananassa HOM05D001826 ORTHO05D004184 2.2e-38 162.2 121 73.6
HanXRQChr13g0426341 Helianthus annuus HOM05D001826 ORTHO05D004184 2.2e-38 162.2 120 74.2
Hma1.2p1_0033F.1_g020380 Hydrangea macrophylla HOM05D001826 ORTHO05D004184 2.2e-38 162.2 120 75.0
Lsat_1_v5_gn_7_5161 Lactuca sativa HOM05D001826 ORTHO05D004184 2.2e-38 162.2 120 74.2
Nitab4.5_0001620g0100 Nicotiana tabacum HOM05D001826 ORTHO05D004184 2.2e-38 162.2 120 75.8
Nitab4.5_0003111g0100 Nicotiana tabacum HOM05D001826 ORTHO05D004184 2.2e-38 162.2 120 75.8
TPR.G37729 Trifolium pratense HOM05D001826 ORTHO05D004184 2.2e-38 162.2 120 75.8
HPP92_020862 Vanilla planifolia HOM05D001826 ORTHO05D004184 2.2e-38 162.2 120 74.2
CiPaw.01G057800 Carya illinoinensis HOM05D001826 ORTHO05D004184 2.9e-38 161.8 120 74.2
Haze_15465 Corylus avellana HOM05D001826 ORTHO05D004184 2.9e-38 161.8 120 74.2
DCAR_006915 Daucus carota HOM05D001826 ORTHO05D004184 2.9e-38 161.8 120 75.0
ECA240G3725 Erigeron canadensis HOM05D001826 ORTHO05D004184 2.9e-38 161.8 120 74.2
HanXRQChr03g0093471 Helianthus annuus HOM05D001826 ORTHO05D004184 2.9e-38 161.8 120 74.2
SalBow5G0163 Salvia bowleyana HOM05D001826 ORTHO05D004184 2.9e-38 161.8 121 73.6
Ah.05g176450 Amaranthus hybridus HOM05D001826 ORTHO05D004184 3.7e-38 161.4 120 74.2
CAN.G78.31 Capsicum annuum HOM05D001826 ORTHO05D004184 3.7e-38 161.4 120 74.2
CDE04G2063 Ceratophyllum demersum HOM05D001826 ORTHO05D004184 3.7e-38 161.4 120 74.2
CDE06G1001 Ceratophyllum demersum HOM05D001826 ORTHO05D004184 3.7e-38 161.4 120 74.2
DCAR_015945 Daucus carota HOM05D001826 ORTHO05D004184 3.7e-38 161.4 120 74.2
Glyma.09G262000 Glycine max HOM05D001826 ORTHO05D004184 3.7e-38 161.4 120 74.2
Glyma.18G230100 Glycine max HOM05D001826 ORTHO05D004184 3.7e-38 161.4 120 74.2
Medtr7g076700 Medicago truncatula HOM05D001826 ORTHO05D004184 3.7e-38 161.4 120 75.0
Oeu014675.3 Olea europaea HOM05D001826 ORTHO05D004184 3.7e-38 161.4 120 74.2
Phvul.008G067800 Phaseolus vulgaris HOM05D001826 ORTHO05D004184 3.7e-38 161.4 122 72.1
Potri.014G080800 Populus trichocarpa HOM05D001826 ORTHO05D004184 3.7e-38 161.4 120 74.2
SGA_v2.0_scaffold277G46674 Striga asiatica HOM05D001826 ORTHO05D004184 3.7e-38 161.4 120 73.3
FvH4_7g13660 Fragaria vesca HOM05D001826 ORTHO05D004184 4.9e-38 161.0 120 74.2
FAN01G1586 Fragaria x ananassa HOM05D001826 ORTHO05D004184 4.9e-38 161.0 120 74.2
Hma1.2p1_0001F.1_g001660 Hydrangea macrophylla HOM05D001826 ORTHO05D004184 4.9e-38 161.0 120 75.0
Lj7A516T61 Lonicera japonica HOM05D001826 ORTHO05D004184 4.9e-38 161.0 120 75.8
Peaxi162Scf00397g00111 Petunia axillaris HOM05D001826 ORTHO05D004184 4.9e-38 161.0 120 75.0
Potri.002G157200 Populus trichocarpa HOM05D001826 ORTHO05D004184 4.9e-38 161.0 120 75.0
RcHm_v2.0_Chr1g0353741 Rosa chinensis HOM05D001826 ORTHO05D004184 4.9e-38 161.0 120 74.2
Sabra02G0124800 Salix brachista HOM05D001826 ORTHO05D004184 4.9e-38 161.0 120 75.0
Sed0005198 Sechium edule HOM05D001826 ORTHO05D004184 4.9e-38 161.0 120 75.8
Solyc01g094290.3 Solanum lycopersicum HOM05D001826 ORTHO05D004184 4.9e-38 161.0 120 75.0
Sopen01g038090 Solanum pennellii HOM05D001826 ORTHO05D004184 4.9e-38 161.0 120 75.0
TAR375G0082 Trochodendron aralioides HOM05D001826 ORTHO05D004184 4.9e-38 161.0 120 73.3
vmacro13307 Vaccinium macrocarpon HOM05D001826 ORTHO05D004184 4.9e-38 161.0 120 74.2
vmacro20955 Vaccinium macrocarpon HOM05D001826 ORTHO05D004184 4.9e-38 161.0 120 75.8
Atru.chr5.450 Acer truncatum HOM05D001826 ORTHO05D004184 6.4e-38 160.6 120 74.2
Actinidia20930 Actinidia chinensis HOM05D001826 ORTHO05D004184 6.4e-38 160.6 120 74.2
EL10Ac1g00529 Beta vulgaris HOM05D001826 ORTHO05D004184 6.4e-38 160.6 120 74.2
CSS0017008 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D004184 6.4e-38 160.6 120 73.3
CSS0033058 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D004184 6.4e-38 160.6 120 73.3
CiPaw.02G028500 Carya illinoinensis HOM05D001826 ORTHO05D004184 6.4e-38 160.6 120 75.0
AUR62033325 Chenopodium quinoa HOM05D001826 ORTHO05D004184 6.4e-38 160.6 120 75.8
AUR62033334 Chenopodium quinoa HOM05D001826 ORTHO05D004184 6.4e-38 160.6 120 75.8
MD07G1141400 Malus domestica HOM05D001826 ORTHO05D004184 6.4e-38 160.6 120 74.2
VMungo1383G3314 Vigna mungo HOM05D001826 ORTHO05D004184 6.4e-38 160.6 120 73.3
HanXRQChr06g0169881 Helianthus annuus HOM05D001826 ORTHO05D004184 8.3e-38 160.2 120 75.0
Hund27301 Selenicereus undatus HOM05D001826 ORTHO05D004184 8.3e-38 160.2 120 73.3
MSTRG.4866 Avicennia marina HOM05D001826 ORTHO05D004184 1.1e-37 159.8 120 73.3
Duzib138G1216 Durio zibethinus HOM05D001826 ORTHO05D004184 1.1e-37 159.8 120 75.0
PSO782G0182 Papaver somniferum HOM05D001826 ORTHO05D004184 1.1e-37 159.8 120 74.2
TWI59G0720 Tripterygium wilfordii HOM05D001826 ORTHO05D004184 1.4e-37 159.5 120 73.3
TWI59G1454 Tripterygium wilfordii HOM05D001826 ORTHO05D004184 1.4e-37 159.5 120 73.3
MSTRG.20812 Avicennia marina HOM05D001826 ORTHO05D004184 1.9e-37 159.1 120 74.2
PSO063G0747 Papaver somniferum HOM05D001826 ORTHO05D004184 1.9e-37 159.1 120 73.3
ATR0680G345 Amborella trichopoda HOM05D001826 ORTHO05D004184 2.4e-37 158.7 120 73.3
DCAR_025143 Daucus carota HOM05D001826 ORTHO05D004184 2.4e-37 158.7 120 72.5
Duzib133G0016 Durio zibethinus HOM05D001826 ORTHO05D004184 2.4e-37 158.7 120 73.3
Sabra14G0058600 Salix brachista HOM05D001826 ORTHO05D004184 3.2e-37 158.3 120 73.3
TWI23G0863 Tripterygium wilfordii HOM05D001826 ORTHO05D004184 3.2e-37 158.3 120 72.5
ECA236G3271 Erigeron canadensis HOM05D001826 ORTHO05D004184 5.4e-37 157.5 120 72.5
VMungo0331G1572 Vigna mungo HOM05D001826 ORTHO05D004184 5.4e-37 157.5 120 75.0
Aa31LG5G380 Aethionema arabicum HOM05D001826 ORTHO05D004184 7.0e-37 157.1 120 73.3
Carub.0006s3656 Capsella rubella HOM05D001826 ORTHO05D004184 7.0e-37 157.1 120 73.3
PGR042G0308 Punica granatum HOM05D001826 ORTHO05D004184 7.0e-37 157.1 120 74.2
SalBow3G1103 Salvia bowleyana HOM05D001826 ORTHO05D004184 7.0e-37 157.1 131 68.7
HanXRQChr04g0121631 Helianthus annuus HOM05D001826 ORTHO05D004184 9.2e-37 156.8 120 72.5
Migut.B01724 Erythranthe guttata HOM05D001826 ORTHO05D004184 1.2e-36 156.4 120 73.3
AT4G00630 Arabidopsis thaliana HOM05D001826 ORTHO05D004184 1.6e-36 156.0 120 72.5
AL6G52810 Arabidopsis lyrata HOM05D001826 ORTHO05D004184 2.1e-36 155.6 120 71.7
THA.LOC104801451 Tarenaya hassleriana HOM05D001826 ORTHO05D004184 2.1e-36 155.6 120 72.5
Zm00001eb433980 Zea mays HOM05D001826 ORTHO05D004184 2.1e-36 155.6 120 71.7
DCAR_008601 Daucus carota HOM05D001826 ORTHO05D004184 2.7e-36 155.2 120 71.7
Glyma.03G014000 Glycine max HOM05D001826 ORTHO05D004184 2.7e-36 155.2 120 73.3
Glyma.07G073700 Glycine max HOM05D001826 ORTHO05D004184 2.7e-36 155.2 120 73.3
Gohir.A08G130000 Gossypium hirsutum HOM05D001826 ORTHO05D004184 2.7e-36 155.2 120 70.8
Gohir.D08G151300 Gossypium hirsutum HOM05D001826 ORTHO05D004184 2.7e-36 155.2 120 70.8
Gorai.004G157200 Gossypium raimondii HOM05D001826 ORTHO05D004184 2.7e-36 155.2 120 70.8
Phvul.010G095600 Phaseolus vulgaris HOM05D001826 ORTHO05D004184 2.7e-36 155.2 120 73.3
SalBow5G2532 Salvia bowleyana HOM05D001826 ORTHO05D004184 2.7e-36 155.2 139 64.0
Actinidia33431 Actinidia chinensis HOM05D001826 ORTHO05D004184 3.5e-36 154.8 120 70.8
arahy.Tifrunner.gnm1.ann1.253UZ6 Arachis hypogaea HOM05D001826 ORTHO05D004184 4.6e-36 154.5 120 73.3
arahy.Tifrunner.gnm1.ann1.42EX8Y Arachis hypogaea HOM05D001826 ORTHO05D004184 4.6e-36 154.5 120 73.3
Lj9C580G11 Lonicera japonica HOM05D001826 ORTHO05D004184 1.0e-35 153.3 120 73.3
Lj3g0020333 Lotus japonicus HOM05D001826 ORTHO05D004184 1.3e-35 152.9 120 72.5
Lalb_Chr10g0097211 Lupinus albus HOM05D001826 ORTHO05D004184 1.7e-35 152.5 120 73.3
CSS0042566 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D004184 2.3e-35 152.1 103 83.5
Ca_23666_v3 Cicer arietinum L. HOM05D001826 ORTHO05D004184 3.0e-35 151.8 120 70.8
Sp1g00490 Schrenkiella parvula HOM05D001826 ORTHO05D004184 5.1e-35 151.0 120 70.8
Sp1g00500 Schrenkiella parvula HOM05D001826 ORTHO05D004184 5.1e-35 151.0 120 70.8
SEGI_36521 Sequoiadendron giganteum HOM05D001826 ORTHO05D004184 5.1e-35 151.0 120 70.8
Mapoly0055s0072 Marchantia polymorpha HOM05D001826 ORTHO05D004184 8.6e-35 150.2 120 70.0
AL1G10550 Arabidopsis lyrata HOM05D001826 ORTHO05D004184 1.1e-34 149.8 120 70.0
BcaB03g13615 Brassica carinata HOM05D001826 ORTHO05D004184 1.1e-34 149.8 120 70.0
A10p00260 Brassica napus HOM05D001826 ORTHO05D004184 1.1e-34 149.8 120 70.0
C05p00270 Brassica napus HOM05D001826 ORTHO05D004184 1.1e-34 149.8 120 70.0
BolC5t28817H Brassica oleracea HOM05D001826 ORTHO05D004184 1.1e-34 149.8 120 70.0
BraA10t42302Z Brassica rapa HOM05D001826 ORTHO05D004184 1.1e-34 149.8 120 70.0
Carub.0001s0042 Capsella rubella HOM05D001826 ORTHO05D004184 1.1e-34 149.8 120 70.0
Thhalv10006595m.g Eutrema salsugineum HOM05D001826 ORTHO05D004184 1.1e-34 149.8 120 70.0
Thhalv10006607m.g Eutrema salsugineum HOM05D001826 ORTHO05D004184 1.1e-34 149.8 120 70.0
Psat4g153760 Pisum sativum HOM05D001826 ORTHO05D004184 1.1e-34 149.8 120 70.8
Medtr8g031550 Medicago truncatula HOM05D001826 ORTHO05D004184 1.5e-34 149.4 120 71.7
Phvul.010G095800 Phaseolus vulgaris HOM05D001826 ORTHO05D004184 1.5e-34 149.4 120 69.2
TPR.G4440 Trifolium pratense HOM05D001826 ORTHO05D004184 1.5e-34 149.4 120 70.0
Aa31LG1G11160 Aethionema arabicum HOM05D001826 ORTHO05D004184 1.9e-34 149.1 120 69.2
C08p53870 Brassica napus HOM05D001826 ORTHO05D004184 1.9e-34 149.1 120 70.8
BolC8t52901H Brassica oleracea HOM05D001826 ORTHO05D004184 1.9e-34 149.1 120 70.8
BraA09t42264Z Brassica rapa HOM05D001826 ORTHO05D004184 1.9e-34 149.1 120 70.8
BcaB03g13616 Brassica carinata HOM05D001826 ORTHO05D004184 3.3e-34 148.3 120 69.2
A10p00230 Brassica napus HOM05D001826 ORTHO05D004184 3.3e-34 148.3 120 69.2
C05p00260 Brassica napus HOM05D001826 ORTHO05D004184 3.3e-34 148.3 120 69.2
BolC5t28815H Brassica oleracea HOM05D001826 ORTHO05D004184 3.3e-34 148.3 120 69.2
Pp3c7_22160 Physcomitrium patens HOM05D001826 ORTHO05D004184 4.3e-34 147.9 120 69.2
SMO331G0018 Selaginella moellendorffii HOM05D001826 ORTHO05D004184 5.6e-34 147.5 120 68.3
CARHR000530 Cardamine hirsuta HOM05D001826 ORTHO05D004184 7.3e-34 147.1 120 69.2
Pp3c11_6640 Physcomitrium patens HOM05D001826 ORTHO05D004184 9.5e-34 146.7 120 68.3
AT1G01790 Arabidopsis thaliana HOM05D001826 ORTHO05D004184 3.6e-33 144.8 120 69.2
Pp3c11_22410 Physcomitrium patens HOM05D001826 ORTHO05D004184 4.7e-33 144.4 120 69.2
unitig_8.g3808 Utricularia gibba HOM05D001826 ORTHO05D004184 6.2e-33 144.1 153 57.5
CSS0021712 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D004184 1.1e-32 143.3 128 64.8
PGSC0003DMG400000153 Solanum tuberosum HOM05D001826 ORTHO05D004184 1.8e-32 142.5 75 93.3
Actinidia12714 Actinidia chinensis HOM05D001826 ORTHO05D004184 2.1e-28 129.0 76 85.5
vmacro13309 Vaccinium macrocarpon HOM05D001826 ORTHO05D004184 7.8e-28 127.1 75 84.0
Nn1g01432 Nelumbo nucifera HOM05D001826 ORTHO05D004184 1.7e-27 125.9 104 68.3
Zm00001eb065780 Zea mays HOM05D001826 ORTHO05D004184 3.0e-27 125.2 101 66.3
Cre04.g220200 Chlamydomonas reinhardtii HOM05D001826 ORTHO05D004184 1.1e-26 123.2 120 56.7
CSS0048057 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D004184 1.5e-26 122.9 136 57.4
MCO01G795 Micromonas commoda HOM05D001826 ORTHO05D004184 2.5e-26 122.1 118 55.9
CSS0049286 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D004184 5.6e-26 120.9 137 54.0
TAR374G0002 Trochodendron aralioides HOM05D001826 ORTHO05D004184 7.6e-15 84.0 78 61.5


User provided reference genes

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