Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046585 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 7.8e-49 196.8 100 100.0
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 7.6e-12 73.9 60 68.3
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 2.9e-11 72.0 52 71.2
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 4.9e-11 71.2 56 67.9
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 6.5e-11 70.9 54 68.5
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 1.1e-10 70.1 61 67.2
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 1.9e-10 69.3 54 66.7
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 1.9e-10 69.3 52 67.3
Lsat_1_v5_gn_4_31941 Lactuca sativa HOM05D003606 ORTHO05D004650 1.9e-10 69.3 56 66.1
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 3.2e-10 68.6 59 62.7
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 3.2e-10 68.6 52 67.3
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 3.2e-10 68.6 52 67.3
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 5.5e-10 67.8 58 58.6
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 7.1e-10 67.4 52 69.2
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 1.2e-09 66.6 52 63.5
Lj3A990T71 Lonicera japonica HOM05D003606 ORTHO05D004650 1.6e-09 66.2 53 66.0
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 2.7e-09 65.5 37 81.1
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 3.5e-09 65.1 52 65.4
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 3.5e-09 65.1 51 66.7
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 4.6e-09 64.7 50 66.0
QL06p005538 Quercus lobata HOM05D003606 ORTHO05D004650 4.6e-09 64.7 56 62.5
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 4.6e-09 64.7 53 64.2
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 6.0e-09 64.3 54 64.8
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 6.0e-09 64.3 48 62.5
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 6.0e-09 64.3 52 61.5
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 7.9e-09 63.9 52 61.5
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 7.9e-09 63.9 57 59.6
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 1.0e-08 63.5 54 64.8
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 1.0e-08 63.5 40 70.0
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 1.0e-08 63.5 40 70.0
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 1.0e-08 63.5 60 53.3
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 1.0e-08 63.5 60 53.3
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 1.0e-08 63.5 48 64.6
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 1.0e-08 63.5 60 58.3
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 1.3e-08 63.2 42 66.7
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 1.3e-08 63.2 51 58.8
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 1.8e-08 62.8 54 53.7
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 1.8e-08 62.8 54 53.7
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 2.3e-08 62.4 42 66.7
Sc03g0002540 Simmondsia chinensis HOM05D003606 ORTHO05D004650 2.3e-08 62.4 50 62.0
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 3.9e-08 61.6 47 63.8
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 5.1e-08 61.2 59 55.9
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 6.7e-08 60.8 60 60.0
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 8.7e-08 60.5 54 51.9
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 8.7e-08 60.5 54 51.9
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 8.7e-08 60.5 58 58.6
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 8.7e-08 60.5 54 53.7
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 1.1e-07 60.1 59 55.9
TAR636G3369 Trochodendron aralioides HOM05D003606 ORTHO05D003127 1.1e-07 60.1 59 52.5
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 1.5e-07 59.7 52 59.6
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 1.5e-07 59.7 48 58.3
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 1.5e-07 59.7 48 58.3
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 1.5e-07 59.7 40 67.5
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 1.5e-07 59.7 55 56.4
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 1.5e-07 59.7 40 67.5
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 1.9e-07 59.3 40 70.0
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 2.5e-07 58.9 48 58.3
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 3.3e-07 58.5 44 61.4
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 3.3e-07 58.5 54 57.4
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 3.3e-07 58.5 54 59.3
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 4.3e-07 58.2 55 52.7
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 4.3e-07 58.2 52 55.8
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 5.7e-07 57.8 59 52.5
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 5.7e-07 57.8 60 50.0
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 5.7e-07 57.8 40 62.5
BraA10t43107Z Brassica rapa HOM05D003606 ORTHO05D004650 7.4e-07 57.4 46 58.7
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 7.4e-07 57.4 47 57.4
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 7.4e-07 57.4 40 62.5
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 7.4e-07 57.4 40 62.5
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 7.4e-07 57.4 40 62.5
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 9.6e-07 57.0 40 65.0
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 9.6e-07 57.0 40 65.0
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 9.6e-07 57.0 54 53.7
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 1.3e-06 56.6 42 59.5
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 1.3e-06 56.6 53 52.8
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 1.3e-06 56.6 47 57.4
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 2.1e-06 55.8 54 57.4
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 2.1e-06 55.8 51 52.9
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 2.8e-06 55.5 40 60.0
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 2.8e-06 55.5 47 55.3
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 3.7e-06 55.1 54 55.6
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 4.8e-06 54.7 40 65.0
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 6.2e-06 54.3 48 54.2
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 6.2e-06 54.3 56 50.0
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 8.2e-06 53.9 54 51.9
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 8.2e-06 53.9 54 55.6
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 8.2e-06 53.9 50 50.0


User provided reference genes

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