Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046569 Camellia sinensis var. sinensis HOM05D007808 ORTHO05D009895 6.0e-244 847.0 421 100.0
CSS0017675 Camellia sinensis var. sinensis HOM05D007808 ORTHO05D009895 1.0e-238 829.7 421 98.3
Actinidia37545 Actinidia chinensis HOM05D007808 ORTHO05D009895 7.6e-154 547.7 368 75.3
Hma1.2p1_0273F.1_g109280 Hydrangea macrophylla HOM05D007808 ORTHO05D009895 2.6e-122 443.0 379 60.4
QL09p041160 Quercus lobata HOM05D007808 ORTHO05D009895 7.6e-122 441.4 379 59.6
Lj2C1144T6 Lonicera japonica HOM05D007808 ORTHO05D009895 4.8e-116 422.2 377 59.7
CANSAT01G0990 Cannabis sativa HOM05D007808 ORTHO05D009895 2.4e-115 419.9 398 55.3
Manes.13G040600 Manihot esculenta HOM05D007808 ORTHO05D009895 1.7e-113 413.7 383 55.6
Potri.014G192200 Populus trichocarpa HOM05D007808 ORTHO05D009895 3.6e-111 406.0 382 55.5
GSVIVG01028406001 Vitis vinifera HOM05D007808 ORTHO05D009895 1.0e-110 404.4 376 55.9
TAR633G0330 Trochodendron aralioides HOM05D007808 ORTHO05D009895 1.1e-109 401.0 373 58.4
TWI18G1304 Tripterygium wilfordii HOM05D007808 ORTHO05D009895 1.7e-108 397.1 423 51.8
RcHm_v2.0_Chr6g0286881 Rosa chinensis HOM05D007808 ORTHO05D009895 3.7e-108 396.0 370 55.1
Atru.chr5.1818 Acer truncatum HOM05D007808 ORTHO05D009895 1.1e-107 394.4 381 55.4
Thecc.01G251900 Theobroma cacao HOM05D007808 ORTHO05D009895 1.1e-107 394.4 370 55.1
Prupe.8G216500 Prunus persica HOM05D007808 ORTHO05D009895 2.4e-107 393.3 359 57.4
Duzib138G1393 Durio zibethinus HOM05D007808 ORTHO05D009895 5.9e-106 388.7 387 53.2
DCAR_018515 Daucus carota HOM05D007808 ORTHO05D009895 2.9e-105 386.3 382 52.4
Gorai.001G180500 Gossypium raimondii HOM05D007808 ORTHO05D009895 1.4e-104 384.0 375 53.6
FAN20G2653 Fragaria x ananassa HOM05D007808 ORTHO05D009895 2.5e-104 383.3 356 53.7
FvH4_2g20710 Fragaria vesca HOM05D007808 ORTHO05D009895 4.2e-104 382.5 375 51.2
FAN27G2486 Fragaria x ananassa HOM05D007808 ORTHO05D009895 2.1e-103 380.2 375 51.5
Nn1g02938 Nelumbo nucifera HOM05D007808 ORTHO05D009895 2.1e-103 380.2 409 51.6
Gohir.D07G157600 Gossypium hirsutum HOM05D007808 ORTHO05D009895 4.7e-103 379.0 375 52.8
Ciclev10020041m.g Citrus clementina HOM05D007808 ORTHO05D009895 6.1e-103 378.6 381 52.5
COL.COLO4_10584 Corchorus olitorius HOM05D007808 ORTHO05D009895 1.4e-102 377.5 399 50.4
FAN15G3261 Fragaria x ananassa HOM05D007808 ORTHO05D009895 1.4e-102 377.5 375 50.7
Gohir.A07G151000 Gossypium hirsutum HOM05D007808 ORTHO05D009895 4.4e-101 372.5 375 52.0
Sabra14G0143900 Salix brachista HOM05D007808 ORTHO05D009895 3.5e-98 362.8 327 56.3
FAN24G0750 Fragaria x ananassa HOM05D007808 ORTHO05D009895 1.2e-95 354.4 357 51.0
MBI10_g30718_MAGBIO Magnolia biondii HOM05D007808 ORTHO05D009895 3.3e-93 346.3 419 47.5
PSO832G1361 Papaver somniferum HOM05D007808 ORTHO05D009895 7.5e-93 345.1 379 47.8
HanXRQChr04g0111341 Helianthus annuus HOM05D007808 ORTHO05D009895 4.1e-91 339.3 373 51.5
PGR031G1809 Punica granatum HOM05D007808 ORTHO05D009895 3.8e-89 332.8 368 49.5
Aqoxy5G00155 Aquilegia oxysepala HOM05D007808 ORTHO05D009895 1.9e-88 330.5 376 48.7
Migut.D00468 Erythranthe guttata HOM05D007808 ORTHO05D009895 2.5e-88 330.1 358 50.0
Peaxi162Scf00415g00913 Petunia axillaris HOM05D007808 ORTHO05D009895 1.8e-86 323.9 376 47.6
Lsat_1_v5_gn_8_92100 Lactuca sativa HOM05D007808 ORTHO05D009895 2.8e-84 316.6 316 54.4
SalBow4G3111 Salvia bowleyana HOM05D007808 ORTHO05D009895 6.3e-84 315.5 353 49.3
Sopen09g028660 Solanum pennellii HOM05D007808 ORTHO05D009895 1.0e-81 308.1 379 44.9
ATR0736G152 Amborella trichopoda HOM05D007808 ORTHO05D009895 1.5e-80 304.3 407 41.8
Solyc09g072860.2 Solanum lycopersicum HOM05D007808 ORTHO05D009895 2.5e-80 303.5 377 43.2
THA.LOC104801132 Tarenaya hassleriana HOM05D007808 ORTHO05D009895 2.1e-79 300.4 377 43.8
Oeu039657.1 Olea europaea HOM05D007808 ORTHO05D009895 4.7e-79 299.3 410 42.4
Cc01_g17900 Coffea canephora HOM05D007808 ORTHO05D009895 1.5e-77 294.3 373 44.8
Haze_24684 Corylus avellana HOM05D007808 ORTHO05D009895 8.3e-76 288.5 248 60.5
Nitab4.5_0010039g0030 Nicotiana tabacum HOM05D007808 ORTHO05D009895 3.5e-74 283.1 382 43.5
CARHR179280 Cardamine hirsuta HOM05D007808 ORTHO05D009895 1.5e-72 277.7 379 43.3
Nitab4.5_0000845g0040 Nicotiana tabacum HOM05D007808 ORTHO05D009895 1.5e-72 277.7 372 43.0
AL8G16070 Arabidopsis lyrata HOM05D007808 ORTHO05D009895 5.6e-72 275.8 378 42.1
AT5G44010 Arabidopsis thaliana HOM05D007808 ORTHO05D009895 3.6e-71 273.1 376 42.0
SGA_v2.0_scaffold1G00644 Striga asiatica HOM05D007808 ORTHO05D009895 4.0e-70 269.6 368 41.6
Carub.0008s0453 Capsella rubella HOM05D007808 ORTHO05D009895 4.4e-69 266.2 379 41.7
A09p20750 Brassica napus HOM05D007808 ORTHO05D009895 1.7e-68 264.2 351 42.7
BraA09t37679Z Brassica rapa HOM05D007808 ORTHO05D009895 2.9e-68 263.5 351 42.5
BcaB07g30982 Brassica carinata HOM05D007808 ORTHO05D009895 3.7e-68 263.1 351 43.0
BcaC04g21876 Brassica carinata HOM05D007808 ORTHO05D009895 8.3e-68 261.9 351 41.9
C09p26260 Brassica napus HOM05D007808 ORTHO05D009895 8.3e-68 261.9 351 41.9
BolC9t55528H Brassica oleracea HOM05D007808 ORTHO05D009895 8.3e-68 261.9 351 41.9
Cpa.g.sc87.15 Carica papaya HOM05D007808 ORTHO05D009895 4.1e-67 259.6 242 57.0
CAN.G1395.2 Capsicum annuum HOM05D007808 ORTHO05D009895 6.0e-66 255.8 318 44.7
Sc05g0003060 Simmondsia chinensis HOM05D007808 ORTHO05D009895 3.6e-63 246.5 314 43.6
PSO764G0215 Papaver somniferum HOM05D007808 ORTHO05D009895 1.8e-62 244.2 375 38.1
HPP92_025831 Vanilla planifolia HOM05D007808 ORTHO05D009895 2.6e-61 240.4 357 38.4
Eucgr.A01321 Eucalyptus grandis HOM05D007808 ORTHO05D009895 6.0e-58 229.2 290 45.5
Os02g0814600 Oryza sativa ssp. japonica HOM05D007808 ORTHO05D009895 8.1e-55 218.8 356 35.4
ECA236G2323 Erigeron canadensis HOM05D000728 ORTHO05D001586 4.9e-52 209.5 364 36.0
Gorai.002G091900 Gossypium raimondii HOM05D007808 ORTHO05D009895 1.6e-50 204.5 244 46.3
Zm00001eb191560 Zea mays HOM05D007808 ORTHO05D009895 1.6e-47 194.5 370 31.9
Thhalv10003421m.g Eutrema salsugineum HOM05D007808 ORTHO05D009895 5.8e-45 186.0 378 34.4
CDE02G3651 Ceratophyllum demersum HOM05D007808 ORTHO05D009895 1.1e-43 181.8 296 36.5
BcaC04g21877 Brassica carinata HOM05D007808 ORTHO05D009895 3.0e-41 173.7 291 36.8
CiPaw.04G189500 Carya illinoinensis HOM05D007808 ORTHO05D009895 1.0e-33 148.7 129 55.8
CiPaw.04G189400 Carya illinoinensis HOM05D007808 ORTHO05D009895 1.2e-29 135.2 89 68.5
Gohir.D11G218200 Gossypium hirsutum HOM05D007808 ORTHO05D009895 1.1e-24 118.6 159 42.1
SEGI_27571 Sequoiadendron giganteum HOM05D007808 ORTHO05D009895 8.1e-23 112.5 249 29.7
Sp2g08850 Schrenkiella parvula HOM05D007808 ORTHO05D009895 1.2e-18 98.6 375 26.4
PGSC0003DMG400003825 Solanum tuberosum HOM05D007808 ORTHO05D009895 2.5e-16 90.9 55 67.3
FAN27G0174 Fragaria x ananassa HOM05D007808 ORTHO05D009895 5.6e-16 89.7 54 66.7
CANSAT56G3388 Cannabis sativa HOM05D007808 ORTHO05D009895 1.0e-12 79.0 52 71.2
AagrBONN_evm.TU.Sc2ySwM_117.2846 Anthoceros agrestis HOM05D007808 ORTHO05D009895 4.2e-11 73.6 331 22.1
Pp3c1_42330 Physcomitrium patens HOM05D007808 ORTHO05D009895 2.7e-10 70.9 113 33.6


User provided reference genes

Program Settings