Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046543 Camellia sinensis var. sinensis HOM05D001272 ORTHO05D109637 1.7e-45 185.7 96 100.0
CSS0020551 Camellia sinensis var. sinensis HOM05D001272 ORTHO05D009067 5.6e-12 74.3 44 88.6
Duzib068G0070 Durio zibethinus HOM05D001272 ORTHO05D009067 9.6e-12 73.6 44 84.1
QL12p031896 Quercus lobata HOM05D001272 ORTHO05D009067 1.6e-11 72.8 44 86.4
CiPaw.12G089700 Carya illinoinensis HOM05D001272 ORTHO05D009067 2.1e-11 72.4 44 81.8
ClCG01G002370 Citrullus lanatus HOM05D001272 ORTHO05D009067 2.1e-11 72.4 44 84.1
MELO3C005708.2 Cucumis melo HOM05D001272 ORTHO05D009067 2.1e-11 72.4 44 84.1
CsaV3_5G002470 Cucumis sativus L. HOM05D001272 ORTHO05D009067 2.1e-11 72.4 44 84.1
Dinv38902 Davidia involucrata HOM05D001272 ORTHO05D009067 2.1e-11 72.4 44 84.1
TAR375G0428 Trochodendron aralioides HOM05D001272 ORTHO05D009067 2.1e-11 72.4 44 81.8
CSS0006743 Camellia sinensis var. sinensis HOM05D001272 ORTHO05D009067 2.8e-11 72.0 44 86.4
COL.COLO4_08367 Corchorus olitorius HOM05D001272 ORTHO05D009067 2.8e-11 72.0 44 81.8
PGR042G0751 Punica granatum HOM05D001272 ORTHO05D009067 2.8e-11 72.0 44 84.1
Thecc.03G285900 Theobroma cacao HOM05D001272 ORTHO05D009067 2.8e-11 72.0 44 81.8
vmacro13971 Vaccinium macrocarpon HOM05D001272 ORTHO05D009067 2.8e-11 72.0 44 84.1
Actinidia33733 Actinidia chinensis HOM05D001272 ORTHO05D009067 3.6e-11 71.6 44 84.1
Ciclev10019842m.g Citrus clementina HOM05D001272 ORTHO05D009067 4.7e-11 71.2 44 81.8
ECA240G0171 Erigeron canadensis HOM05D001272 ORTHO05D009067 4.7e-11 71.2 44 81.8
FvH4_5g03130 Fragaria vesca HOM05D001272 ORTHO05D009067 4.7e-11 71.2 49 77.6
FAN04G1180 Fragaria x ananassa HOM05D001272 ORTHO05D009067 4.7e-11 71.2 49 77.6
FAN08G2811 Fragaria x ananassa HOM05D001272 ORTHO05D009067 4.7e-11 71.2 49 77.6
FAN13G0903 Fragaria x ananassa HOM05D001272 ORTHO05D009067 4.7e-11 71.2 49 77.6
FAN18G1124 Fragaria x ananassa HOM05D001272 ORTHO05D009067 4.7e-11 71.2 49 77.6
Lj8A216T74 Lonicera japonica HOM05D001272 ORTHO05D009067 4.7e-11 71.2 43 86.0
Manes.01G057400 Manihot esculenta HOM05D001272 ORTHO05D009067 4.7e-11 71.2 44 81.8
Hma1.2p1_0216F.1_g091010 Hydrangea macrophylla HOM05D001272 ORTHO05D009067 6.2e-11 70.9 44 81.8
Hma1.2p1_0216F.1_g091020 Hydrangea macrophylla HOM05D001272 ORTHO05D009067 6.2e-11 70.9 44 81.8
RcHm_v2.0_Chr7g0196651 Rosa chinensis HOM05D001272 ORTHO05D009067 6.2e-11 70.9 44 79.5
Sabra01G0074700 Salix brachista HOM05D001272 ORTHO05D009067 6.2e-11 70.9 44 81.8
Actinidia27365 Actinidia chinensis HOM05D001272 ORTHO05D009067 8.1e-11 70.5 44 81.8
MSTRG.13858 Avicennia marina HOM05D001272 ORTHO05D009067 8.1e-11 70.5 44 81.8
Rhsim07G0087700 Rhododendron simsii HOM05D001272 ORTHO05D009067 8.1e-11 70.5 44 81.8
Sed0006187 Sechium edule HOM05D001272 ORTHO05D009067 8.1e-11 70.5 44 81.8
GSVIVG01019412001 Vitis vinifera HOM05D001272 ORTHO05D009067 8.1e-11 70.5 44 79.5
Cc08_g15200 Coffea canephora HOM05D001272 ORTHO05D009067 1.1e-10 70.1 44 77.3
SalBow8G3189 Salvia bowleyana HOM05D001272 ORTHO05D009067 1.1e-10 70.1 44 79.5
TPR.G12899 Trifolium pratense HOM05D001272 ORTHO05D009067 1.1e-10 70.1 44 81.8
Duzib205G0044 Durio zibethinus HOM05D001272 ORTHO05D009067 1.4e-10 69.7 44 77.3
PSO063G0795 Papaver somniferum HOM05D001272 ORTHO05D009067 1.4e-10 69.7 44 79.5
PSO170G3348 Papaver somniferum HOM05D001272 ORTHO05D009067 1.4e-10 69.7 44 79.5
CSS0027614 Camellia sinensis var. sinensis HOM05D001272 ORTHO05D009067 1.8e-10 69.3 81 51.9
DCAR_005569 Daucus carota HOM05D001272 ORTHO05D009067 1.8e-10 69.3 49 77.6
Lalb_Chr05g0224521 Lupinus albus HOM05D001272 ORTHO05D009067 1.8e-10 69.3 44 81.8
Nn1g01649 Nelumbo nucifera HOM05D001272 ORTHO05D009067 1.8e-10 69.3 44 79.5
SGA_v2.0_scaffold521G52695 Striga asiatica HOM05D001272 ORTHO05D009067 1.8e-10 69.3 44 79.5
HanXRQChr03g0085961 Helianthus annuus HOM05D001272 ORTHO05D009067 2.4e-10 68.9 44 79.5
Psat7g030360 Pisum sativum HOM05D001272 ORTHO05D009067 2.4e-10 68.9 44 79.5
Prupe.5G106000 Prunus persica HOM05D001272 ORTHO05D009067 2.4e-10 68.9 44 77.3
CANSAT21G0654 Cannabis sativa HOM05D001272 ORTHO05D009067 3.1e-10 68.6 44 77.3
Sc01g0009800 Simmondsia chinensis HOM05D001272 ORTHO05D009067 3.1e-10 68.6 44 77.3
Gohir.A12G233700 Gossypium hirsutum HOM05D001272 ORTHO05D009067 4.0e-10 68.2 44 77.3
Potri.001G099600 Populus trichocarpa HOM05D001272 ORTHO05D009067 4.0e-10 68.2 44 77.3
Gohir.D12G233700 Gossypium hirsutum HOM05D001272 ORTHO05D009067 5.2e-10 67.8 44 77.3
Gorai.008G250000 Gossypium raimondii HOM05D001272 ORTHO05D009067 5.2e-10 67.8 44 77.3
Atru.chr9.2124 Acer truncatum HOM05D001272 ORTHO05D009067 6.8e-10 67.4 44 77.3
MSTRG.1844 Avicennia marina HOM05D001272 ORTHO05D009067 6.8e-10 67.4 44 75.0
EL10Ac5g12830 Beta vulgaris HOM05D001272 ORTHO05D009067 6.8e-10 67.4 44 77.3
Glyma.08G017800 Glycine max HOM05D001272 ORTHO05D009067 6.8e-10 67.4 44 77.3
Medtr8g098910 Medicago truncatula HOM05D001272 ORTHO05D009067 6.8e-10 67.4 44 77.3
Migut.A00725 Erythranthe guttata HOM05D001272 ORTHO05D009067 8.9e-10 67.0 44 77.3
Haze_08764 Corylus avellana HOM05D001272 ORTHO05D009067 1.2e-09 66.6 44 75.0
Haze_08767 Corylus avellana HOM05D001272 ORTHO05D009067 1.2e-09 66.6 44 75.0
VMungo0251G0543 Vigna mungo HOM05D001272 ORTHO05D009067 1.2e-09 66.6 46 73.9
CAN.G532.34 Capsicum annuum HOM05D001272 ORTHO05D009067 1.5e-09 66.2 44 77.3
Nitab4.5_0003015g0030 Nicotiana tabacum HOM05D001272 ORTHO05D009067 1.5e-09 66.2 44 77.3
Nitab4.5_0004051g0060 Nicotiana tabacum HOM05D001272 ORTHO05D009067 1.5e-09 66.2 44 77.3
Oeu042355.1 Olea europaea HOM05D001272 ORTHO05D009067 1.5e-09 66.2 44 77.3
Peaxi162Scf00074g01819 Petunia axillaris HOM05D001272 ORTHO05D009067 1.5e-09 66.2 44 77.3
Solyc08g081530.3 Solanum lycopersicum HOM05D001272 ORTHO05D009067 1.5e-09 66.2 44 77.3
Sopen08g029850 Solanum pennellii HOM05D001272 ORTHO05D009067 1.5e-09 66.2 44 77.3
PGSC0003DMG400012322 Solanum tuberosum HOM05D001272 ORTHO05D009067 1.5e-09 66.2 44 77.3
Hund14276 Selenicereus undatus HOM05D001272 ORTHO05D009067 2.6e-09 65.5 44 75.0
Ah.12g051870 Amaranthus hybridus HOM05D001272 ORTHO05D009067 3.4e-09 65.1 44 75.0
Cfa012237 Carpinus fangiana HOM05D001272 ORTHO05D009067 3.4e-09 65.1 44 72.7
AUR62010744 Chenopodium quinoa HOM05D001272 ORTHO05D009067 3.4e-09 65.1 44 75.0
AUR62019748 Chenopodium quinoa HOM05D001272 ORTHO05D009067 3.4e-09 65.1 44 75.0
Phvul.002G292800 Phaseolus vulgaris HOM05D001272 ORTHO05D009067 3.4e-09 65.1 44 75.0
THA.LOC104809369 Tarenaya hassleriana HOM05D001272 ORTHO05D009067 3.4e-09 65.1 44 75.0
Aa31LG2G1050 Aethionema arabicum HOM05D001272 ORTHO05D009067 4.4e-09 64.7 44 72.7
ATR0661G449 Amborella trichopoda HOM05D001272 ORTHO05D009067 4.4e-09 64.7 44 72.7
Lsat_1_v5_gn_6_85001 Lactuca sativa HOM05D001272 ORTHO05D009067 4.4e-09 64.7 44 75.0
Lj4g0020327 Lotus japonicus HOM05D001272 ORTHO05D009067 4.4e-09 64.7 44 75.0
Os08g0151800 Oryza sativa ssp. japonica HOM05D001272 ORTHO05D009067 4.4e-09 64.7 44 70.5
Ca_10948_v3 Cicer arietinum L. HOM05D001272 ORTHO05D009067 5.8e-09 64.3 44 75.0
Ca_17510_v3 Cicer arietinum L. HOM05D001272 ORTHO05D009067 5.8e-09 64.3 44 75.0
arahy.Tifrunner.gnm1.ann1.BN59M2 Arachis hypogaea HOM05D001272 ORTHO05D009067 9.9e-09 63.5 44 75.0
arahy.Tifrunner.gnm1.ann1.MISE4Z Arachis hypogaea HOM05D001272 ORTHO05D009067 9.9e-09 63.5 44 75.0
Carub.0002s0090 Capsella rubella HOM05D001272 ORTHO05D009067 9.9e-09 63.5 44 72.7
CARHR047030 Cardamine hirsuta HOM05D001272 ORTHO05D009067 9.9e-09 63.5 44 72.7
Thhalv10023425m.g Eutrema salsugineum HOM05D001272 ORTHO05D009067 9.9e-09 63.5 44 72.7
Sp2g00750 Schrenkiella parvula HOM05D001272 ORTHO05D009067 1.3e-08 63.2 44 70.5
AL2G11170 Arabidopsis lyrata HOM05D001272 ORTHO05D009067 2.2e-08 62.4 44 70.5
BcaC04g22664 Brassica carinata HOM05D001272 ORTHO05D009067 2.2e-08 62.4 44 70.5
A09p14030 Brassica napus HOM05D001272 ORTHO05D009067 2.2e-08 62.4 44 70.5
C09p16920 Brassica napus HOM05D001272 ORTHO05D009067 2.2e-08 62.4 44 70.5
BolC9t54589H Brassica oleracea HOM05D001272 ORTHO05D009067 2.2e-08 62.4 44 70.5
BraA09t37050Z Brassica rapa HOM05D001272 ORTHO05D009067 2.2e-08 62.4 44 70.5
MD14G1111300 Malus domestica HOM05D001272 ORTHO05D009067 2.2e-08 62.4 44 72.7
unitig_748.g7425 Utricularia gibba HOM05D001272 ORTHO05D009067 2.2e-08 62.4 44 68.2
AT1G63940 Arabidopsis thaliana HOM05D001272 ORTHO05D009067 2.9e-08 62.0 44 68.2
Zm00001eb416430 Zea mays HOM05D001272 ORTHO05D009067 2.9e-08 62.0 44 68.2
Glyma.05G211502 Glycine max HOM05D001272 ORTHO05D009067 3.8e-08 61.6 42 76.2
BcaB07g31535 Brassica carinata HOM05D001272 ORTHO05D009067 4.9e-08 61.2 44 70.5
Eucgr.E00656 Eucalyptus grandis HOM05D001272 ORTHO05D009067 4.9e-08 61.2 44 70.5
AagrBONN_evm.TU.Sc2ySwM_117.3796 Anthoceros agrestis HOM05D001272 ORTHO05D009067 7.1e-07 57.4 51 56.9
CDE04G1183 Ceratophyllum demersum HOM05D001272 ORTHO05D009067 9.3e-07 57.0 44 56.8
CSS0034571 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D013495 3.5e-06 55.1 33 87.9
Mapoly0057s0016 Marchantia polymorpha HOM05D001272 ORTHO05D009067 7.8e-06 53.9 44 54.5


User provided reference genes

Program Settings