Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046525 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.3e-37 159.1 72 100.0
CSS0040221 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 4.1e-15 84.3 51 66.7
Actinidia25283 Actinidia chinensis HOM05D007628 ORTHO05D007342 5.3e-15 84.0 50 72.0
CSS0048807 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.3e-13 79.3 51 62.7
CSS0007364 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 5.0e-13 77.4 51 62.7
CSS0008166 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 8.5e-13 76.6 47 66.0
Rhsim11G0055100 Rhododendron simsii HOM05D007628 ORTHO05D007342 8.5e-13 76.6 66 53.0
PGR042G2312 Punica granatum HOM05D007628 ORTHO05D007342 1.4e-12 75.9 50 58.0
Eucgr.F03003 Eucalyptus grandis HOM05D007628 ORTHO05D007342 3.2e-12 74.7 50 58.0
Manes.18G103800 Manihot esculenta HOM05D007628 ORTHO05D007342 4.2e-12 74.3 49 59.2
Carub.0002s1884 Capsella rubella HOM05D007628 ORTHO05D007342 5.5e-12 73.9 50 58.0
Aa31LG4G8570 Aethionema arabicum HOM05D007628 ORTHO05D007342 7.2e-12 73.6 50 58.0
BcaC03g15330 Brassica carinata HOM05D007628 ORTHO05D007342 1.2e-11 72.8 50 58.0
C02p29350 Brassica napus HOM05D007628 ORTHO05D007342 1.2e-11 72.8 50 58.0
BolC2t08986H Brassica oleracea HOM05D007628 ORTHO05D007342 1.2e-11 72.8 50 58.0
CARHR064880 Cardamine hirsuta HOM05D007628 ORTHO05D007342 1.2e-11 72.8 47 59.6
BraA02t06812Z Brassica rapa HOM05D007628 ORTHO05D007342 1.6e-11 72.4 50 58.0
Potri.019G080600 Populus trichocarpa HOM05D007628 ORTHO05D007342 1.6e-11 72.4 50 58.0
Cfa012934 Carpinus fangiana HOM05D007628 ORTHO05D007342 2.1e-11 72.0 51 51.0
Manes.18G104000 Manihot esculenta HOM05D007628 ORTHO05D007342 2.1e-11 72.0 46 58.7
QL02p025803 Quercus lobata HOM05D007628 ORTHO05D007342 2.1e-11 72.0 60 51.7
AT1G72060 Arabidopsis thaliana HOM05D007628 ORTHO05D007342 3.6e-11 71.2 50 56.0
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 3.6e-11 71.2 51 58.8
QL93p0163_0041 Quercus lobata HOM05D007628 ORTHO05D007342 3.6e-11 71.2 51 58.8
BcaB05g24703 Brassica carinata HOM05D007628 ORTHO05D007342 6.1e-11 70.5 50 54.0
DCAR_001460 Daucus carota HOM05D001035 ORTHO05D001045 7.9e-11 70.1 49 55.1
CiPaw.08G002000 Carya illinoinensis HOM05D007628 ORTHO05D007342 1.8e-10 68.9 56 50.0
Hund02181 Selenicereus undatus HOM05D007628 ORTHO05D007342 1.8e-10 68.9 49 57.1
QL02p025976 Quercus lobata HOM05D007628 ORTHO05D007342 2.3e-10 68.6 51 56.9
QL93p0163_0044 Quercus lobata HOM05D007628 ORTHO05D007342 2.3e-10 68.6 51 56.9
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 2.3e-10 68.6 50 54.0
Zm00001eb127310 Zea mays HOM05D007628 ORTHO05D007342 2.3e-10 68.6 49 49.0
Ah.06g183420 Amaranthus hybridus HOM05D007628 ORTHO05D007342 3.0e-10 68.2 49 53.1
Rhsim06G0114400 Rhododendron simsii HOM05D007628 ORTHO05D007342 3.9e-10 67.8 53 52.8
GSVIVG01023245001 Vitis vinifera HOM05D007628 ORTHO05D007342 5.1e-10 67.4 49 53.1
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 6.7e-10 67.0 49 59.2
Sc16g0006710 Simmondsia chinensis HOM05D007628 ORTHO05D007342 6.7e-10 67.0 48 52.1
THA.LOC104800123 Tarenaya hassleriana HOM05D007628 ORTHO05D007342 6.7e-10 67.0 50 50.0
Psat7g225880 Pisum sativum HOM05D007628 ORTHO05D007342 8.8e-10 66.6 46 60.9
Hund27101 Selenicereus undatus HOM05D007628 ORTHO05D007342 1.5e-09 65.9 71 39.4
Cc10_g10180 Coffea canephora HOM05D013878 ORTHO05D007342 2.5e-09 65.1 48 50.0
Cc10_g10200 Coffea canephora HOM05D007628 ORTHO05D007342 5.7e-09 63.9 48 54.2
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 5.7e-09 63.9 45 60.0
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 5.7e-09 63.9 66 50.0
arahy.Tifrunner.gnm1.ann1.UI0JR9 Arachis hypogaea HOM05D007628 ORTHO05D007342 7.4e-09 63.5 46 54.3
Migut.C01297 Erythranthe guttata HOM05D007628 ORTHO05D007342 1.7e-08 62.4 51 49.0
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 2.2e-08 62.0 42 57.1
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 2.2e-08 62.0 47 55.3
Duzib177G0741 Durio zibethinus HOM05D007628 ORTHO05D007342 2.8e-08 61.6 65 41.5
Psat7g225920 Pisum sativum HOM05D007628 ORTHO05D007342 2.8e-08 61.6 46 56.5
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 3.7e-08 61.2 43 55.8
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 3.7e-08 61.2 44 56.8
Lj4g0016425 Lotus japonicus HOM05D007628 ORTHO05D007342 4.8e-08 60.8 46 60.9
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 8.2e-08 60.1 47 57.4
TPR.G34100 Trifolium pratense HOM05D007628 ORTHO05D007342 1.4e-07 59.3 43 58.1
arahy.Tifrunner.gnm1.ann1.I9AMSX Arachis hypogaea HOM05D007628 ORTHO05D007342 2.4e-07 58.5 46 50.0
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 3.1e-07 58.2 52 48.1
arahy.Tifrunner.gnm1.ann1.GT4ITC Arachis hypogaea HOM05D007628 ORTHO05D007342 4.1e-07 57.8 44 56.8
arahy.Tifrunner.gnm1.ann1.L82REB Arachis hypogaea HOM05D007628 ORTHO05D007342 4.1e-07 57.8 44 56.8
SHI05836 Sapria himalayana HOM05D007628 ORTHO05D007342 4.1e-07 57.8 62 43.5
Rhsim06G0114500 Rhododendron simsii HOM05D007628 ORTHO05D007342 5.3e-07 57.4 53 43.4
SalBow7G0776 Salvia bowleyana HOM05D007628 ORTHO05D007342 6.9e-07 57.0 44 52.3
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 9.1e-07 56.6 47 55.3
Lalb_Chr25g0283251 Lupinus albus HOM05D007628 ORTHO05D007342 1.5e-06 55.8 42 50.0
Lj4g0001077 Lotus japonicus HOM05D007628 ORTHO05D007342 2.0e-06 55.5 47 51.1
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 2.0e-06 55.5 52 50.0
RcHm_v2.0_Chr7g0228301 Rosa chinensis HOM05D007628 ORTHO05D007342 2.0e-06 55.5 47 53.2
AUR62004619 Chenopodium quinoa HOM05D007628 ORTHO05D007342 2.6e-06 55.1 42 52.4
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 2.6e-06 55.1 47 53.2
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.6e-06 55.1 47 53.2
Os03g0734300 Oryza sativa ssp. japonica HOM05D007628 ORTHO05D007342 2.6e-06 55.1 78 38.5
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 5.9e-06 53.9 43 51.2
Haze_21289 Corylus avellana HOM05D017027 ORTHO05D007342 7.7e-06 53.5 66 43.9
Lalb_Chr01g0016231 Lupinus albus HOM05D007628 ORTHO05D007342 7.7e-06 53.5 41 53.7


User provided reference genes

Program Settings