Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 3.8e-182 641.3 317 100.0
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 6.7e-171 604.0 298 99.7
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 1.5e-133 479.9 317 76.3
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 3.6e-132 475.3 317 72.9
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 6.8e-131 471.1 329 74.5
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 1.2e-130 470.3 299 79.3
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 4.9e-129 464.9 317 70.0
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 3.9e-126 455.3 319 71.2
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 5.0e-126 454.9 317 71.0
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 8.6e-126 454.1 317 69.7
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 1.1e-125 453.8 302 72.5
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 7.3e-125 451.1 316 70.9
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 2.1e-124 449.5 317 70.7
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 3.6e-124 448.7 319 70.5
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 6.2e-124 448.0 316 68.0
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 1.8e-123 446.4 316 67.7
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 3.1e-123 445.7 293 73.7
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 4.0e-123 445.3 316 69.0
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 4.0e-123 445.3 317 70.0
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 1.2e-122 443.7 315 71.1
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 1.2e-122 443.7 317 70.3
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 3.4e-122 442.2 319 69.9
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 7.5e-122 441.0 316 67.7
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 2.2e-121 439.5 316 68.4
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 2.2e-121 439.5 322 67.1
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 2.9e-121 439.1 317 68.5
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 3.7e-121 438.7 317 69.4
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 1.1e-120 437.2 318 67.6
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 2.4e-120 436.0 318 71.1
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 1.2e-119 433.7 318 67.3
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 8.6e-118 427.6 293 71.7
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 1.5e-117 426.8 316 69.6
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 1.2e-116 423.7 246 78.9
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 1.1e-115 420.6 314 65.6
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 2.3e-115 419.5 317 65.9
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 4.0e-115 418.7 317 67.2
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 4.0e-115 418.7 317 67.8
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 5.2e-115 418.3 271 72.3
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 6.8e-115 417.9 231 84.0
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 1.2e-114 417.2 264 73.9
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 2.0e-114 416.4 264 73.1
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 2.0e-114 416.4 290 69.7
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 2.6e-114 416.0 325 64.0
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 9.8e-114 414.1 264 73.9
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 1.3e-113 413.7 318 66.7
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 1.3e-113 413.7 318 66.4
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 1.3e-113 413.7 317 65.9
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 1.7e-113 413.3 324 63.9
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 2.2e-113 412.9 319 63.9
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 6.4e-113 411.4 317 64.7
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 6.4e-113 411.4 317 64.7
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 1.4e-112 410.2 251 76.1
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 1.4e-112 410.2 251 75.7
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 2.4e-112 409.5 321 64.5
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 4.1e-112 408.7 232 81.0
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 4.1e-112 408.7 232 81.0
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 5.4e-112 408.3 252 74.2
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 1.2e-111 407.1 317 64.4
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 3.5e-111 405.6 317 63.7
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 6.0e-111 404.8 316 63.6
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.3e-110 403.7 334 62.3
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.3e-110 403.7 334 62.3
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 5.1e-110 401.7 317 63.7
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 1.1e-109 400.6 317 64.0
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 2.5e-109 399.4 317 64.7
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 3.3e-109 399.1 346 59.0
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 5.6e-109 398.3 317 62.8
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 2.8e-108 396.0 315 63.5
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 1.1e-107 394.0 230 80.4
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 5.2e-107 391.7 232 78.4
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 2.0e-106 389.8 250 71.2
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 3.4e-106 389.0 266 70.3
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 1.7e-105 386.7 250 71.6
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 2.2e-105 386.3 279 65.2
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 3.8e-105 385.6 315 61.6
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 1.2e-103 380.6 295 65.8
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 2.1e-100 369.8 250 70.0
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 4.7e-100 368.6 250 70.0
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 6.2e-100 368.2 310 58.7
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 8.1e-100 367.9 247 68.8
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 1.1e-99 367.5 280 64.6
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 1.4e-99 367.1 320 62.2
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 4.0e-99 365.5 320 60.3
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 6.4e-97 358.2 320 58.8
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 1.7e-94 350.1 237 67.5
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 1.7e-94 350.1 244 67.6
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 1.1e-93 347.4 247 64.8
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 2.5e-93 346.3 311 57.6
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 9.6e-93 344.4 280 62.9
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 3.9e-86 322.4 317 57.4
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 2.5e-85 319.7 280 57.9
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 4.8e-84 315.5 252 63.9
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 1.5e-82 310.5 251 60.2
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 1.7e-81 307.0 344 51.2
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 7.9e-79 298.1 257 58.8
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 6.7e-78 295.0 193 71.0
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 1.4e-75 287.3 267 53.9
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 6.9e-75 285.0 234 59.4
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 2.8e-68 263.1 227 57.7
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 1.1e-67 261.2 151 77.5
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 1.4e-67 260.8 172 66.3
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 3.4e-66 256.1 177 70.1
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 1.1e-56 224.6 173 61.8
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 2.9e-49 199.9 264 40.9
Oeu018171.1 Olea europaea HOM05D006249 ORTHO05D007643 3.2e-48 196.4 174 62.6
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 6.3e-44 182.2 245 40.8
arahy.Tifrunner.gnm1.ann1.U7WVQR Arachis hypogaea HOM05D006249 ORTHO05D007643 5.3e-43 179.1 199 48.2
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 1.5e-40 171.0 154 55.2
Sp1g02020 Schrenkiella parvula HOM05D006249 ORTHO05D007643 2.3e-38 163.7 198 48.0
Ca_15970_v3 Cicer arietinum L. HOM05D006249 ORTHO05D007643 1.9e-32 144.1 107 58.9
Hund30725 Selenicereus undatus HOM05D006249 ORTHO05D007643 7.2e-32 142.1 99 66.7
Medtr8g064430 Medicago truncatula HOM05D006249 ORTHO05D007643 1.2e-31 141.4 123 57.7
Glyma.03G158766 Glycine max HOM05D006249 ORTHO05D007643 2.6e-29 133.7 94 70.2
Hund30696 Selenicereus undatus HOM05D006249 ORTHO05D007643 5.7e-29 132.5 98 63.3
arahy.Tifrunner.gnm1.ann1.AHQ53Z Arachis hypogaea HOM05D006249 ORTHO05D007643 2.9e-25 120.2 119 52.1
arahy.Tifrunner.gnm1.ann1.FBQK8B Arachis hypogaea HOM05D006249 ORTHO05D007643 2.9e-25 120.2 119 53.8
Cfa022768 Carpinus fangiana HOM05D006249 ORTHO05D007643 3.8e-25 119.8 148 44.6
PRCOL_00003971 Prasinoderma coloniale HOM05D006249 ORTHO05D007643 5.0e-25 119.4 152 42.8
CSS0005124 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 1.9e-24 117.5 58 96.6
Glyma.03G158832 Glycine max HOM05D006249 ORTHO05D007643 1.5e-21 107.8 63 76.2
SHI34902 Sapria himalayana HOM05D006249 ORTHO05D007643 3.1e-19 100.1 143 39.9
SHI29847 Sapria himalayana HOM05D006249 ORTHO05D007643 4.1e-19 99.8 137 38.7
SHI29011 Sapria himalayana HOM05D006249 ORTHO05D007643 8.9e-14 82.0 202 30.2
SHI34501 Sapria himalayana HOM05D006249 ORTHO05D007643 1.4e-11 74.7 94 43.6
SHI16544 Sapria himalayana HOM05D006249 ORTHO05D007643 5.4e-11 72.8 116 37.9
SHI36883 Sapria himalayana HOM05D006249 ORTHO05D007643 1.0e-09 68.6 56 53.6
SHI54291 Sapria himalayana HOM05D006249 ORTHO05D007643 1.7e-09 67.8 159 36.5
SHI04506 Sapria himalayana HOM05D006249 ORTHO05D007643 3.9e-09 66.6 121 31.4
SHI31647 Sapria himalayana HOM05D006249 ORTHO05D007643 6.6e-09 65.9 61 49.2
SHI49503 Sapria himalayana HOM05D000624 ORTHO05D000495 2.5e-08 63.9 50 62.0
SHI36882 Sapria himalayana HOM05D006249 ORTHO05D007643 3.3e-08 63.5 117 33.3
SEGI_29111 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 4.3e-08 63.2 41 65.9
SHI27267 Sapria himalayana HOM05D000624 ORTHO05D000495 2.1e-07 60.8 52 50.0
SHI41947 Sapria himalayana HOM05D000624 ORTHO05D000495 6.2e-07 59.3 50 58.0
SHI43714 Sapria himalayana HOM05D000624 ORTHO05D007643 8.0e-07 58.9 49 55.1
SHI45616 Sapria himalayana HOM05D000624 ORTHO05D000495 8.0e-07 58.9 50 58.0
SHI49364 Sapria himalayana HOM05D000624 ORTHO05D000495 1.1e-06 58.5 50 56.0
Dinv15968 Davidia involucrata HOM05D065274 ORTHO05D179967 8.9e-06 55.5 55 52.7
Dinv18228 Davidia involucrata HOM05D065274 ORTHO05D180883 8.9e-06 55.5 55 52.7


User provided reference genes

Program Settings