Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046502 Camellia sinensis var. sinensis HOM05D007357 ORTHO05D009314 2.2e-78 295.8 177 100.0
CSS0024010 Camellia sinensis var. sinensis HOM05D007357 ORTHO05D009314 1.2e-71 273.5 166 99.4
Actinidia14748 Actinidia chinensis HOM05D007357 ORTHO05D009314 3.9e-59 231.9 166 78.3
Rhsim07G0138300 Rhododendron simsii HOM05D007357 ORTHO05D009314 9.9e-47 190.7 164 75.6
vmacro13970 Vaccinium macrocarpon HOM05D007357 ORTHO05D009314 6.6e-43 177.9 219 54.8
Nitab4.5_0001033g0080 Nicotiana tabacum HOM05D007357 ORTHO05D009314 7.6e-39 164.5 175 56.6
TAR629G3058 Trochodendron aralioides HOM05D007357 ORTHO05D009314 2.9e-38 162.5 166 62.0
Sopen08g024580 Solanum pennellii HOM05D007357 ORTHO05D009314 3.8e-38 162.2 176 57.4
PGSC0003DMG400030879 Solanum tuberosum HOM05D007357 ORTHO05D009314 4.9e-38 161.8 176 57.4
Solyc08g075930.4 Solanum lycopersicum HOM05D007357 ORTHO05D009314 1.1e-37 160.6 172 58.1
Hma1.2p1_1179F.1_g264570 Hydrangea macrophylla HOM05D007357 ORTHO05D009314 1.2e-36 157.1 177 58.2
Peaxi162Scf00408g00712 Petunia axillaris HOM05D007357 ORTHO05D009314 4.3e-34 148.7 179 53.1
Haze_08047 Corylus avellana HOM05D007357 ORTHO05D009314 5.6e-34 148.3 167 55.1
Migut.A00548 Erythranthe guttata HOM05D007357 ORTHO05D009314 2.8e-33 146.0 186 53.2
Lsat_1_v5_gn_3_28060 Lactuca sativa HOM05D007357 ORTHO05D009314 3.1e-32 142.5 176 53.4
Oeu059314.1 Olea europaea HOM05D007357 ORTHO05D009314 6.9e-32 141.4 207 49.8
CiPaw.11G103400 Carya illinoinensis HOM05D007357 ORTHO05D009314 1.2e-31 140.6 148 60.1
QL02p024644 Quercus lobata HOM05D007357 ORTHO05D009314 1.2e-31 140.6 167 56.3
Cc08_g05250 Coffea canephora HOM05D007357 ORTHO05D009314 5.8e-31 138.3 192 59.4
Duzib068G0657 Durio zibethinus HOM05D007357 ORTHO05D009314 5.8e-31 138.3 154 56.5
CAN.G1269.3 Capsicum annuum HOM05D007357 ORTHO05D009314 4.9e-30 135.2 144 56.2
SGA_v2.0_scaffold89G27413 Striga asiatica HOM05D003343 ORTHO05D003787 6.4e-30 134.8 169 55.6
Cfa012604 Carpinus fangiana HOM05D007357 ORTHO05D009314 2.4e-29 132.9 194 45.9
Gorai.008G220900 Gossypium raimondii HOM05D007357 ORTHO05D009314 9.3e-29 131.0 167 51.5
HanXRQChr17g0539311 Helianthus annuus HOM05D007357 ORTHO05D009314 1.2e-28 130.6 177 45.2
Gohir.D12G206000 Gossypium hirsutum HOM05D007357 ORTHO05D009314 2.7e-28 129.4 167 51.5
COL.COLO4_16848 Corchorus olitorius HOM05D007357 ORTHO05D009314 3.5e-28 129.0 102 71.6
Gohir.A12G203400 Gossypium hirsutum HOM05D007357 ORTHO05D009314 6.0e-28 128.3 168 51.8
ECA246G3443 Erigeron canadensis HOM05D007357 ORTHO05D009314 7.9e-28 127.9 175 47.4
VMungo1215G1709 Vigna mungo HOM05D007357 ORTHO05D009314 3.9e-27 125.6 168 50.6
CsaV3_3G030320 Cucumis sativus L. HOM05D007357 ORTHO05D009314 1.9e-26 123.2 170 47.6
Phvul.002G128100 Phaseolus vulgaris HOM05D007357 ORTHO05D009314 3.3e-26 122.5 168 50.0
Sed0001819 Sechium edule HOM05D007357 ORTHO05D009314 3.3e-26 122.5 162 51.2
Sc07g0008390 Simmondsia chinensis HOM05D007357 ORTHO05D009314 3.3e-26 122.5 142 52.8
FvH4_5g24040 Fragaria vesca HOM05D007357 ORTHO05D009314 5.6e-26 121.7 105 64.8
FAN18G2492 Fragaria x ananassa HOM05D007357 ORTHO05D009314 5.6e-26 121.7 105 64.8
FAN18G4511 Fragaria x ananassa HOM05D007357 ORTHO05D009314 5.6e-26 121.7 105 64.8
Ah.07g201200 Amaranthus hybridus HOM05D007357 ORTHO05D009314 7.4e-26 121.3 174 48.3
Prupe.5G019800 Prunus persica HOM05D007357 ORTHO05D009314 7.4e-26 121.3 165 47.9
RcHm_v2.0_Chr7g0213521 Rosa chinensis HOM05D007357 ORTHO05D009314 9.6e-26 120.9 114 61.4
Nn4g25471 Nelumbo nucifera HOM05D007357 ORTHO05D009314 1.6e-25 120.2 170 49.4
arahy.Tifrunner.gnm1.ann1.0Q5JCD Arachis hypogaea HOM05D007357 ORTHO05D009314 2.1e-25 119.8 166 48.8
arahy.Tifrunner.gnm1.ann1.JPN6B0 Arachis hypogaea HOM05D007357 ORTHO05D009314 2.1e-25 119.8 166 48.8
FvH4_3g08760 Fragaria vesca HOM05D007357 ORTHO05D009314 2.1e-25 119.8 104 64.4
Potri.001G132232 Populus trichocarpa HOM05D007357 ORTHO05D009314 2.1e-25 119.8 96 67.7
ClCG07G002370 Citrullus lanatus HOM05D007357 ORTHO05D009314 2.8e-25 119.4 170 47.1
MD06G1015900 Malus domestica HOM05D007357 ORTHO05D009314 2.8e-25 119.4 98 67.3
AUR62044266 Chenopodium quinoa HOM05D007357 ORTHO05D009314 3.7e-25 119.0 159 48.4
AUR62027337 Chenopodium quinoa HOM05D007357 ORTHO05D009314 6.2e-25 118.2 164 50.6
FAN08G0560 Fragaria x ananassa HOM05D007357 ORTHO05D009314 6.2e-25 118.2 105 62.9
TWI34G1422 Tripterygium wilfordii HOM05D007357 ORTHO05D009314 3.1e-24 115.9 104 62.5
TWI34G1682 Tripterygium wilfordii HOM05D007357 ORTHO05D009314 3.1e-24 115.9 104 62.5
Cpa.g.sc223.2 Carica papaya HOM05D007357 ORTHO05D009314 9.0e-24 114.4 171 49.1
DCAR_008186 Daucus carota HOM05D007357 ORTHO05D009314 9.0e-24 114.4 174 46.6
Eucgr.D02601 Eucalyptus grandis HOM05D007357 ORTHO05D009314 1.5e-23 113.6 98 64.3
Oeu042216.1 Olea europaea HOM05D007357 ORTHO05D009314 2.0e-23 113.2 192 47.9
AUR62007392 Chenopodium quinoa HOM05D007357 ORTHO05D009314 3.4e-23 112.5 159 45.3
Sed0016962 Sechium edule HOM05D007357 ORTHO05D009314 4.5e-23 112.1 167 46.7
unitig_32.g10966 Utricularia gibba HOM05D007357 ORTHO05D009314 5.8e-23 111.7 180 44.4
CANSAT21G2249 Cannabis sativa HOM05D007357 ORTHO05D009314 7.6e-23 111.3 159 47.8
Thecc.03G316500 Theobroma cacao HOM05D007357 ORTHO05D009314 1.0e-22 110.9 135 54.1
arahy.Tifrunner.gnm1.ann1.L1IIZH Arachis hypogaea HOM05D007357 ORTHO05D009314 2.2e-22 109.8 109 59.6
MELO3C022754.2 Cucumis melo HOM05D007357 ORTHO05D009314 2.9e-22 109.4 175 43.4
Manes.17G008100 Manihot esculenta HOM05D007357 ORTHO05D009314 2.9e-22 109.4 173 49.1
CDE12G0114 Ceratophyllum demersum HOM05D007357 ORTHO05D009314 3.8e-22 109.0 166 47.0
HPP92_025510 Vanilla planifolia HOM05D007357 ORTHO05D009314 3.8e-22 109.0 95 61.1
MD06G1016600 Malus domestica HOM05D007357 ORTHO05D009314 6.5e-22 108.2 181 49.2
Nitab4.5_0001786g0050 Nicotiana tabacum HOM05D007357 ORTHO05D009314 6.5e-22 108.2 175 44.0
Ciclev10002529m.g Citrus clementina HOM05D007357 ORTHO05D009314 2.5e-21 106.3 170 50.6
PSO063G0202 Papaver somniferum HOM05D007357 ORTHO05D009314 2.5e-21 106.3 92 66.3
HPP92_025525 Vanilla planifolia HOM05D007357 ORTHO05D009314 3.2e-21 105.9 95 58.9
TWI79G1144 Tripterygium wilfordii HOM05D007357 ORTHO05D009314 9.3e-21 104.4 109 56.9
PSO782G0982 Papaver somniferum HOM05D007357 ORTHO05D009314 2.1e-20 103.2 181 49.7
Glyma.01G150100 Glycine max HOM05D007357 ORTHO05D009314 4.6e-20 102.1 168 45.8
ECA240G0146 Erigeron canadensis HOM05D007357 ORTHO05D009314 1.9e-18 96.7 167 38.9
Medtr5g026790 Medicago truncatula HOM05D007357 ORTHO05D009314 3.3e-18 95.9 170 45.9
ATR0829G081 Amborella trichopoda HOM05D007357 ORTHO05D009314 4.3e-18 95.5 167 38.9
Aqoxy5G03983 Aquilegia oxysepala HOM05D007357 ORTHO05D009314 6.2e-17 91.7 110 48.2
Zm00001eb171770 Zea mays HOM05D007357 ORTHO05D009314 1.4e-16 90.5 106 47.2
Psat2g142360 Pisum sativum HOM05D007357 ORTHO05D009314 2.4e-16 89.7 168 41.7
Os07g0452600 Oryza sativa ssp. japonica HOM05D007357 ORTHO05D009314 3.1e-16 89.4 93 51.6
Lj2g0006468 Lotus japonicus HOM05D007357 ORTHO05D009314 4.1e-16 89.0 168 42.9
Zm00001eb096560 Zea mays HOM05D007357 ORTHO05D009314 2.0e-15 86.7 162 38.9
Ca_25098_v3 Cicer arietinum L. HOM05D007357 ORTHO05D009314 1.0e-14 84.3 168 42.3
EL10Ac5g11952 Beta vulgaris HOM05D000153 ORTHO05D000118 6.5e-14 81.6 171 45.6
Nitab4.5_0018136g0010 Nicotiana tabacum HOM05D007357 ORTHO05D009314 1.9e-13 80.1 101 52.5
Glyma.09G214200 Glycine max HOM05D007357 ORTHO05D009314 4.6e-12 75.5 168 40.5
Lalb_Chr05g0215411 Lupinus albus HOM05D007357 ORTHO05D009314 1.3e-11 73.9 167 39.5
Hund11140 Selenicereus undatus HOM05D007357 ORTHO05D009314 1.3e-11 73.9 94 48.9
arahy.Tifrunner.gnm1.ann1.F5EPY8 Arachis hypogaea HOM05D007357 ORTHO05D009314 2.3e-11 73.2 50 82.0
Haze_08057 Corylus avellana HOM05D007357 ORTHO05D009314 6.7e-11 71.6 166 39.2
Hma1.2p1_0784F.1_g217055 Hydrangea macrophylla HOM05D007357 ORTHO05D009314 5.7e-10 68.6 83 51.8
Hma1.2p1_0944F.1_g240000 Hydrangea macrophylla HOM05D007357 ORTHO05D009314 5.7e-10 68.6 83 51.8
Oeu059300.1 Olea europaea HOM05D007357 ORTHO05D009314 6.3e-09 65.1 57 66.7
TPR.G17258 Trifolium pratense HOM05D007357 ORTHO05D009314 6.3e-09 65.1 47 72.3
FAN11G2380 Fragaria x ananassa HOM05D007357 ORTHO05D009314 8.2e-09 64.7 46 73.9
Sabra01G0102000 Salix brachista HOM05D007357 ORTHO05D009314 2.6e-07 59.7 47 63.8
Hma1.2p1_0784F.1_g217060 Hydrangea macrophylla HOM05D007357 ORTHO05D009314 1.7e-06 57.0 39 76.9
Hma1.2p1_0944F.1_g240015 Hydrangea macrophylla HOM05D007357 ORTHO05D009314 1.7e-06 57.0 39 76.9
Os08g0180400 Oryza sativa ssp. japonica HOM05D007357 ORTHO05D009314 1.7e-06 57.0 47 63.8
Lsat_1_v5_gn_5_56181 Lactuca sativa HOM05D007357 ORTHO05D009314 2.2e-06 56.6 165 30.9


User provided reference genes

Program Settings