Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046486 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D016847 1.7e-58 229.2 119 100.0
CSS0020325 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D016847 3.6e-53 211.5 129 88.4
CSS0042115 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 1.9e-49 199.1 138 79.7
CSS0036492 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D016847 6.2e-37 157.5 131 70.2
Atru.chr9.1015 Acer truncatum HOM05D003221 ORTHO05D004432 7.2e-25 117.5 100 70.0
Actinidia16191 Actinidia chinensis HOM05D003221 ORTHO05D004432 7.2e-25 117.5 100 70.0
Ah.08g218090 Amaranthus hybridus HOM05D003221 ORTHO05D004432 7.2e-25 117.5 100 70.0
Ah.15g095310 Amaranthus hybridus HOM05D003221 ORTHO05D004432 7.2e-25 117.5 100 70.0
EL10Ac7g18076 Beta vulgaris HOM05D003221 ORTHO05D004432 7.2e-25 117.5 100 70.0
CSS0000758 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 7.2e-25 117.5 100 70.0
CSS0008999 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 7.2e-25 117.5 100 70.0
AUR62001280 Chenopodium quinoa HOM05D003221 ORTHO05D004432 7.2e-25 117.5 100 70.0
AUR62025726 Chenopodium quinoa HOM05D003221 ORTHO05D004432 7.2e-25 117.5 100 70.0
Duzib084G0381 Durio zibethinus HOM05D003221 ORTHO05D004432 7.2e-25 117.5 100 70.0
Gohir.D09G245900 Gossypium hirsutum HOM05D003221 ORTHO05D004432 7.2e-25 117.5 100 70.0
Gorai.006G270400 Gossypium raimondii HOM05D003221 ORTHO05D004432 7.2e-25 117.5 100 70.0
Manes.14G055233 Manihot esculenta HOM05D003221 ORTHO05D004432 7.2e-25 117.5 100 70.0
Potri.012G093500 Populus trichocarpa HOM05D003221 ORTHO05D004432 7.2e-25 117.5 100 70.0
QL10p005036 Quercus lobata HOM05D003221 ORTHO05D004432 7.2e-25 117.5 100 70.0
Rhsim08G0185100 Rhododendron simsii HOM05D003221 ORTHO05D004432 7.2e-25 117.5 100 70.0
Hund05648 Selenicereus undatus HOM05D003221 ORTHO05D004432 7.2e-25 117.5 100 70.0
Thecc.03G123100 Theobroma cacao HOM05D003221 ORTHO05D004432 7.2e-25 117.5 100 70.0
vmacro19238 Vaccinium macrocarpon HOM05D003221 ORTHO05D004432 7.2e-25 117.5 100 70.0
GSVIVG01007538001 Vitis vinifera HOM05D003221 ORTHO05D004432 7.2e-25 117.5 100 70.0
COL.COLO4_22963 Corchorus olitorius HOM05D003221 ORTHO05D004432 9.3e-25 117.1 100 69.0
TWI14G1333 Tripterygium wilfordii HOM05D003221 ORTHO05D004432 9.3e-25 117.1 100 69.0
Duzib205G0731 Durio zibethinus HOM05D003221 ORTHO05D004432 1.2e-24 116.7 100 71.0
Gorai.003G109300 Gossypium raimondii HOM05D003221 ORTHO05D004432 1.2e-24 116.7 100 69.0
arahy.Tifrunner.gnm1.ann1.BX07LP Arachis hypogaea HOM05D003221 ORTHO05D004432 1.6e-24 116.3 100 69.0
arahy.Tifrunner.gnm1.ann1.UKG7ME Arachis hypogaea HOM05D003221 ORTHO05D004432 1.6e-24 116.3 100 69.0
MSTRG.4587 Avicennia marina HOM05D003221 ORTHO05D004432 1.6e-24 116.3 100 69.0
CANSAT80G0340 Cannabis sativa HOM05D003221 ORTHO05D004432 1.6e-24 116.3 100 69.0
Cfa018890 Carpinus fangiana HOM05D003221 ORTHO05D004432 1.6e-24 116.3 100 69.0
CiPaw.12G035900 Carya illinoinensis HOM05D003221 ORTHO05D004432 1.6e-24 116.3 100 69.0
Ciclev10020559m.g Citrus clementina HOM05D003221 ORTHO05D004432 1.6e-24 116.3 100 69.0
Dinv11105 Davidia involucrata HOM05D003221 ORTHO05D004432 1.6e-24 116.3 100 69.0
Gohir.D03G103700 Gossypium hirsutum HOM05D003221 ORTHO05D004432 1.6e-24 116.3 100 68.0
Manes.06G115400 Manihot esculenta HOM05D003221 ORTHO05D004432 1.6e-24 116.3 100 69.0
Oeu011575.1 Olea europaea HOM05D003221 ORTHO05D004432 1.6e-24 116.3 100 69.0
Phvul.003G208200 Phaseolus vulgaris HOM05D003221 ORTHO05D004432 1.6e-24 116.3 100 69.0
Potri.015G090900 Populus trichocarpa HOM05D003221 ORTHO05D004432 1.6e-24 116.3 100 69.0
VMungo1215G0589 Vigna mungo HOM05D003221 ORTHO05D004432 1.6e-24 116.3 100 69.0
HanXRQChr09g0272871 Helianthus annuus HOM05D003221 ORTHO05D004432 2.1e-24 115.9 100 68.0
HanXRQChr16g0497921 Helianthus annuus HOM05D003221 ORTHO05D004432 2.1e-24 115.9 100 68.0
Lsat_1_v5_gn_4_78821 Lactuca sativa HOM05D003221 ORTHO05D004432 2.1e-24 115.9 100 68.0
Lj9A475T64 Lonicera japonica HOM05D003221 ORTHO05D004432 2.1e-24 115.9 100 68.0
Gohir.A09G245000 Gossypium hirsutum HOM05D003221 ORTHO05D004432 2.7e-24 115.5 100 69.0
Sc04g0000950 Simmondsia chinensis HOM05D003221 ORTHO05D004432 2.7e-24 115.5 100 68.0
Duzib068G0069 Durio zibethinus HOM05D003221 ORTHO05D004432 3.5e-24 115.2 100 68.0
Glyma.17G127100 Glycine max HOM05D003221 ORTHO05D004432 3.5e-24 115.2 100 68.0
Lj5A100G57 Lonicera japonica HOM05D003221 ORTHO05D004432 3.5e-24 115.2 100 68.0
Lj4g0007668 Lotus japonicus HOM05D003221 ORTHO05D004432 3.5e-24 115.2 100 68.0
Lalb_Chr07g0183231 Lupinus albus HOM05D003221 ORTHO05D004432 3.5e-24 115.2 100 68.0
Oeu033323.1 Olea europaea HOM05D003221 ORTHO05D004432 3.5e-24 115.2 100 68.0
Sabra15G0113000 Salix brachista HOM05D003221 ORTHO05D004432 3.5e-24 115.2 100 68.0
Sed0024107 Sechium edule HOM05D003221 ORTHO05D004432 3.5e-24 115.2 100 69.0
TWI39G0859 Tripterygium wilfordii HOM05D003221 ORTHO05D004432 3.5e-24 115.2 100 68.0
ClCG03G003520 Citrullus lanatus HOM05D003221 ORTHO05D004432 4.6e-24 114.8 100 68.0
Cc04_g10290 Coffea canephora HOM05D003221 ORTHO05D004432 4.6e-24 114.8 100 68.0
MELO3C002335.2 Cucumis melo HOM05D003221 ORTHO05D004432 4.6e-24 114.8 100 68.0
CsaV3_1G009320 Cucumis sativus L. HOM05D003221 ORTHO05D004432 4.6e-24 114.8 100 68.0
Migut.I00477 Erythranthe guttata HOM05D003221 ORTHO05D004432 4.6e-24 114.8 100 67.0
Gohir.A03G062400 Gossypium hirsutum HOM05D003221 ORTHO05D004432 4.6e-24 114.8 100 68.0
Gohir.D12G190900 Gossypium hirsutum HOM05D003221 ORTHO05D004432 4.6e-24 114.8 100 68.0
Lalb_Chr23g0273491 Lupinus albus HOM05D003221 ORTHO05D004432 4.6e-24 114.8 100 67.0
MD06G1151500 Malus domestica HOM05D003221 ORTHO05D004432 4.6e-24 114.8 100 67.0
Prupe.5G156700 Prunus persica HOM05D003221 ORTHO05D004432 4.6e-24 114.8 100 67.0
CSS0035074 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 6.1e-24 114.4 100 69.0
Dinv38467 Davidia involucrata HOM05D003221 ORTHO05D004432 6.1e-24 114.4 100 68.0
ECA232G2465 Erigeron canadensis HOM05D003221 ORTHO05D004432 6.1e-24 114.4 101 66.3
Eucgr.I00301 Eucalyptus grandis HOM05D003221 ORTHO05D004432 6.1e-24 114.4 100 68.0
PSO445G0024 Papaver somniferum HOM05D003221 ORTHO05D004432 6.1e-24 114.4 100 68.0
THA.LOC104825005 Tarenaya hassleriana HOM05D003221 ORTHO05D004432 6.1e-24 114.4 100 68.0
CSS0006566 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 7.9e-24 114.0 100 69.0
PSO063G7046 Papaver somniferum HOM05D003221 ORTHO05D004432 7.9e-24 114.0 100 68.0
PSO782G0707 Papaver somniferum HOM05D003221 ORTHO05D004432 7.9e-24 114.0 100 68.0
Ca_05563_v3 Cicer arietinum L. HOM05D003221 ORTHO05D004432 1.0e-23 113.6 100 67.0
FvH4_3g25540 Fragaria vesca HOM05D003221 ORTHO05D004432 1.0e-23 113.6 100 66.0
FAN11G1198 Fragaria x ananassa HOM05D003221 ORTHO05D004432 1.0e-23 113.6 100 66.0
FAN21G3720 Fragaria x ananassa HOM05D003221 ORTHO05D004432 1.0e-23 113.6 100 66.0
FAN25G3633 Fragaria x ananassa HOM05D003221 ORTHO05D004432 1.0e-23 113.6 100 66.0
Hma1.2p1_0209F.1_g088430 Hydrangea macrophylla HOM05D003221 ORTHO05D004432 1.0e-23 113.6 100 67.0
Lalb_Chr08g0236971 Lupinus albus HOM05D003221 ORTHO05D004432 1.0e-23 113.6 100 66.0
Medtr4g104080 Medicago truncatula HOM05D003221 ORTHO05D004432 1.0e-23 113.6 100 67.0
RcHm_v2.0_Chr7g0191061 Rosa chinensis HOM05D003221 ORTHO05D004432 1.0e-23 113.6 100 66.0
Sed0014675 Sechium edule HOM05D003221 ORTHO05D004432 1.0e-23 113.6 100 67.0
SGA_v2.0_scaffold350G49637 Striga asiatica HOM05D003221 ORTHO05D004432 1.0e-23 113.6 100 66.0
TPR.G16844 Trifolium pratense HOM05D003221 ORTHO05D004432 1.0e-23 113.6 100 67.0
TPR.G37528 Trifolium pratense HOM05D003221 ORTHO05D004432 1.0e-23 113.6 100 67.0
DCAR_027511 Daucus carota HOM05D003221 ORTHO05D004432 1.3e-23 113.2 100 66.0
Gorai.008G204800 Gossypium raimondii HOM05D003221 ORTHO05D004432 1.3e-23 113.2 100 67.0
MBI06_g05239_MAGBIO Magnolia biondii HOM05D003221 ORTHO05D004432 1.3e-23 113.2 108 62.0
vmacro01936 Vaccinium macrocarpon HOM05D003221 ORTHO05D004432 1.3e-23 113.2 100 67.0
Aqoxy1G01463 Aquilegia oxysepala HOM05D003221 ORTHO05D004432 1.8e-23 112.8 100 67.0
MBI11_g19363_MAGBIO Magnolia biondii HOM05D003221 ORTHO05D004432 1.8e-23 112.8 100 67.0
Nn4g22458 Nelumbo nucifera HOM05D003221 ORTHO05D004432 1.8e-23 112.8 100 67.0
SalBow5G2462 Salvia bowleyana HOM05D003221 ORTHO05D004432 1.8e-23 112.8 100 65.0
CAN.G990.4 Capsicum annuum HOM05D003221 ORTHO05D004432 2.3e-23 112.5 100 67.0
MBI06_g43853_MAGBIO Magnolia biondii HOM05D003221 ORTHO05D004432 2.3e-23 112.5 100 66.0
MD14G1163300 Malus domestica HOM05D003221 ORTHO05D004432 2.3e-23 112.5 100 66.0
Peaxi162Scf00324g00334 Petunia axillaris HOM05D003221 ORTHO05D004432 2.3e-23 112.5 100 67.0
PGR083G1499 Punica granatum HOM05D003221 ORTHO05D004432 2.3e-23 112.5 100 67.0
Solyc07g009140.3 Solanum lycopersicum HOM05D003221 ORTHO05D004432 2.3e-23 112.5 100 67.0
Sopen07g017130 Solanum pennellii HOM05D003221 ORTHO05D004432 2.3e-23 112.5 100 67.0
PGSC0003DMG402024210 Solanum tuberosum HOM05D003221 ORTHO05D004432 2.3e-23 112.5 100 67.0
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 2.3e-23 112.5 100 66.0
unitig_747.g21330 Utricularia gibba HOM05D003221 ORTHO05D004432 2.3e-23 112.5 100 66.0
Aa31LG7G11020 Aethionema arabicum HOM05D003221 ORTHO05D004432 3.0e-23 112.1 100 66.0
ATR0681G172 Amborella trichopoda HOM05D003221 ORTHO05D004432 3.0e-23 112.1 100 66.0
AL7G28360 Arabidopsis lyrata HOM05D003221 ORTHO05D004432 3.0e-23 112.1 100 66.0
AT4G24820 Arabidopsis thaliana HOM05D003221 ORTHO05D004432 3.0e-23 112.1 100 66.0
Carub.0007s1623 Capsella rubella HOM05D003221 ORTHO05D004432 3.0e-23 112.1 100 66.0
CARHR232220 Cardamine hirsuta HOM05D003221 ORTHO05D004432 3.0e-23 112.1 100 66.0
Thhalv10025431m.g Eutrema salsugineum HOM05D003221 ORTHO05D004432 3.0e-23 112.1 100 66.0
MD06G1156100 Malus domestica HOM05D003221 ORTHO05D004432 3.9e-23 111.7 100 65.0
Nn3g16577 Nelumbo nucifera HOM05D003221 ORTHO05D004432 3.9e-23 111.7 100 67.0
Psat4g064960 Pisum sativum HOM05D003221 ORTHO05D004432 3.9e-23 111.7 100 66.0
CDE07G0656 Ceratophyllum demersum HOM05D003221 ORTHO05D004432 5.1e-23 111.3 100 65.0
Hma1.2p1_0046F.1_g027520 Hydrangea macrophylla HOM05D003221 ORTHO05D004432 5.1e-23 111.3 100 66.0
Lj5g0004669 Lotus japonicus HOM05D003221 ORTHO05D004432 5.1e-23 111.3 100 65.0
Sp7g22810 Schrenkiella parvula HOM05D003221 ORTHO05D004432 5.1e-23 111.3 100 66.0
Glyma.05G044500 Glycine max HOM05D003221 ORTHO05D004432 6.7e-23 110.9 100 66.0
Glyma.05G044900 Glycine max HOM05D003221 ORTHO05D004432 6.7e-23 110.9 100 66.0
THA.LOC104811603 Tarenaya hassleriana HOM05D003221 ORTHO05D004432 8.7e-23 110.5 100 68.0
TAR371G1119 Trochodendron aralioides HOM05D003221 ORTHO05D004432 8.7e-23 110.5 100 66.0
BcaC06g32856 Brassica carinata HOM05D003221 ORTHO05D004432 1.1e-22 110.2 100 65.0
Cpa.g.sc4.74 Carica papaya HOM05D003221 ORTHO05D004432 1.1e-22 110.2 82 74.4
CDE04G0976 Ceratophyllum demersum HOM05D003221 ORTHO05D004432 1.1e-22 110.2 100 64.0
Gohir.D02G137350 Gossypium hirsutum HOM05D003221 ORTHO05D004432 1.1e-22 110.2 100 67.0
Nitab4.5_0000366g0070 Nicotiana tabacum HOM05D003221 ORTHO05D004432 1.1e-22 110.2 100 66.0
Nitab4.5_0006219g0010 Nicotiana tabacum HOM05D003221 ORTHO05D004432 1.1e-22 110.2 100 66.0
SEGI_11838 Sequoiadendron giganteum HOM05D003221 ORTHO05D004432 1.1e-22 110.2 100 65.0
SEGI_32179 Sequoiadendron giganteum HOM05D003221 ORTHO05D004432 1.1e-22 110.2 100 65.0
ATR0824G170 Amborella trichopoda HOM05D003221 ORTHO05D004432 1.5e-22 109.8 100 64.0
CAN.G886.11 Capsicum annuum HOM05D003221 ORTHO05D004432 1.5e-22 109.8 100 65.0
Eucgr.K02756 Eucalyptus grandis HOM05D003221 ORTHO05D004432 1.5e-22 109.8 100 66.0
FAN16G0231 Fragaria x ananassa HOM05D003221 ORTHO05D004432 1.5e-22 109.8 100 65.0
Os04g0485000 Oryza sativa ssp. japonica HOM05D003221 ORTHO05D004432 1.5e-22 109.8 100 65.0
BcaB03g12449 Brassica carinata HOM05D003221 ORTHO05D004432 1.9e-22 109.4 100 65.0
BcaC07g38153 Brassica carinata HOM05D003221 ORTHO05D004432 1.9e-22 109.4 100 65.0
BcaNung07243 Brassica carinata HOM05D003221 ORTHO05D004432 1.9e-22 109.4 100 65.0
A01p16130 Brassica napus HOM05D003221 ORTHO05D004432 1.9e-22 109.4 100 65.0
A03p55560 Brassica napus HOM05D003221 ORTHO05D004432 1.9e-22 109.4 100 65.0
A08p21360 Brassica napus HOM05D003221 ORTHO05D004432 1.9e-22 109.4 100 65.0
C01p20120 Brassica napus HOM05D003221 ORTHO05D004432 1.9e-22 109.4 100 65.0
C07p53800 Brassica napus HOM05D003221 ORTHO05D004432 1.9e-22 109.4 100 65.0
BolC1t01941H Brassica oleracea HOM05D003221 ORTHO05D004432 1.9e-22 109.4 100 65.0
BolC7t45870H Brassica oleracea HOM05D003221 ORTHO05D004432 1.9e-22 109.4 100 65.0
BraA01t01549Z Brassica rapa HOM05D003221 ORTHO05D004432 1.9e-22 109.4 100 65.0
BraA03t14625Z Brassica rapa HOM05D003221 ORTHO05D004432 1.9e-22 109.4 100 65.0
BraA08t34085Z Brassica rapa HOM05D003221 ORTHO05D004432 1.9e-22 109.4 100 65.0
Gorai.005G153700 Gossypium raimondii HOM05D003221 ORTHO05D004432 1.9e-22 109.4 100 66.0
HPP92_024646 Vanilla planifolia HOM05D003221 ORTHO05D004432 1.9e-22 109.4 100 65.0
MSTRG.22924 Avicennia marina HOM05D003221 ORTHO05D004432 2.5e-22 109.0 99 64.6
TAR626G0734 Trochodendron aralioides HOM05D003221 ORTHO05D004432 2.5e-22 109.0 100 64.0
CSS0004138 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 5.7e-22 107.8 100 66.0
Os02g0600100 Oryza sativa ssp. japonica HOM05D003221 ORTHO05D004432 5.7e-22 107.8 100 64.0
Zm00001eb079270 Zea mays HOM05D003221 ORTHO05D004432 5.7e-22 107.8 100 64.0
Haze_07275 Corylus avellana HOM05D003221 ORTHO05D004630 1.3e-21 106.7 135 52.6
BolC8t48588H Brassica oleracea HOM05D003221 ORTHO05D004432 3.7e-21 105.1 100 63.0
CARHR238350 Cardamine hirsuta HOM05D003221 ORTHO05D004432 8.2e-21 104.0 99 62.6
SMO118G0024 Selaginella moellendorffii HOM05D003221 ORTHO05D004432 2.4e-20 102.4 100 61.0
Pp3c12_14600 Physcomitrium patens HOM05D003221 ORTHO05D004432 3.1e-20 102.1 100 61.0
CSS0000638 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 4.1e-20 101.7 100 63.0
Pp3c10_7470 Physcomitrium patens HOM05D003221 ORTHO05D004432 6.9e-20 100.9 100 61.0
Mapoly0014s0216 Marchantia polymorpha HOM05D003221 ORTHO05D004432 3.4e-19 98.6 100 60.0
AagrBONN_evm.TU.Sc2ySwM_228.4449 Anthoceros agrestis HOM05D003221 ORTHO05D004432 1.0e-18 97.1 100 58.0
FAN04G2436 Fragaria x ananassa HOM05D003221 ORTHO05D004432 1.1e-17 93.6 86 64.0
QL05p041001 Quercus lobata HOM05D003221 ORTHO05D016847 5.5e-17 91.3 52 86.5
CBR_g40800 Chara braunii HOM05D003221 ORTHO05D004432 7.2e-17 90.9 83 61.4
Cre13.g581450 Chlamydomonas reinhardtii HOM05D003221 ORTHO05D004432 8.8e-15 84.0 82 52.4
Haze_26412 Corylus avellana HOM05D003221 ORTHO05D004432 1.7e-13 79.7 82 53.7
MCO04G155 Micromonas commoda HOM05D003221 ORTHO05D004432 6.3e-13 77.8 82 54.9
QL10p005029 Quercus lobata HOM05D003221 ORTHO05D004432 6.3e-13 77.8 82 59.8
Lsat_1_v5_gn_4_21520 Lactuca sativa HOM05D003221 ORTHO05D016847 1.8e-12 76.3 67 62.7
FAN13G1328 Fragaria x ananassa HOM05D003221 ORTHO05D016847 2.4e-12 75.9 52 75.0
RcHm_v2.0_Chr5g0044171 Rosa chinensis HOM05D003221 ORTHO05D016847 6.9e-12 74.3 90 52.2
Medtr8g046560 Medicago truncatula HOM05D003221 ORTHO05D004432 2.6e-11 72.4 81 55.6
RcHm_v2.0_Chr7g0191031 Rosa chinensis HOM05D003221 ORTHO05D016847 1.1e-09 67.0 61 60.7
PRCOL_00002590 Prasinoderma coloniale HOM05D003221 ORTHO05D004432 8.8e-07 57.4 80 41.2


User provided reference genes

Program Settings