Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046481 Camellia sinensis var. sinensis HOM05D000878 ORTHO05D018218 2.5e-22 108.6 89 100.0
Actinidia18791 Actinidia chinensis HOM05D000878 ORTHO05D001408 1.4e-12 76.3 42 88.1
Actinidia12555 Actinidia chinensis HOM05D000878 ORTHO05D001408 4.0e-12 74.7 42 85.7
Actinidia31606 Actinidia chinensis HOM05D000878 ORTHO05D018218 4.0e-12 74.7 42 85.7
Rhsim06G0205300 Rhododendron simsii HOM05D000878 ORTHO05D001408 5.2e-12 74.3 42 85.7
Thecc.07G104800 Theobroma cacao HOM05D000878 ORTHO05D001408 5.2e-12 74.3 42 85.7
Peaxi162Scf01503g00019 Petunia axillaris HOM05D000878 ORTHO05D001408 6.8e-12 73.9 42 81.0
Hma1.2p1_0580F.1_g182830 Hydrangea macrophylla HOM05D000878 ORTHO05D001408 8.9e-12 73.6 43 81.4
Atru.chr10.1706 Acer truncatum HOM05D000878 ORTHO05D001408 1.2e-11 73.2 42 81.0
Dinv14968 Davidia involucrata HOM05D000878 ORTHO05D001408 1.2e-11 73.2 42 83.3
ECA234G0163 Erigeron canadensis HOM05D000878 ORTHO05D001408 1.2e-11 73.2 42 81.0
PGR083G1354 Punica granatum HOM05D000878 ORTHO05D001408 1.2e-11 73.2 42 81.0
vmacro11910 Vaccinium macrocarpon HOM05D000878 ORTHO05D001408 1.5e-11 72.8 42 83.3
Cc02_g32320 Coffea canephora HOM05D000878 ORTHO05D001408 2.0e-11 72.4 42 81.0
Cc05_g11390 Coffea canephora HOM05D000878 ORTHO05D001408 2.0e-11 72.4 42 81.0
PGR031G0857 Punica granatum HOM05D000878 ORTHO05D001408 2.0e-11 72.4 42 81.0
Duzib170G0254 Durio zibethinus HOM05D000878 ORTHO05D001408 2.6e-11 72.0 42 81.0
Gohir.A04G038400 Gossypium hirsutum HOM05D000878 ORTHO05D001408 2.6e-11 72.0 42 81.0
Gohir.D05G344600 Gossypium hirsutum HOM05D000878 ORTHO05D001408 2.6e-11 72.0 42 81.0
Gorai.009G372600 Gossypium raimondii HOM05D000878 ORTHO05D001408 2.6e-11 72.0 42 81.0
vmacro09502 Vaccinium macrocarpon HOM05D000878 ORTHO05D001408 2.6e-11 72.0 42 81.0
DCAR_019590 Daucus carota HOM05D000878 ORTHO05D001408 3.4e-11 71.6 42 81.0
DCAR_021015 Daucus carota HOM05D000878 ORTHO05D001408 3.4e-11 71.6 42 81.0
Actinidia35221 Actinidia chinensis HOM05D000878 ORTHO05D001408 4.4e-11 71.2 42 83.3
Lj1A833T51 Lonicera japonica HOM05D000878 ORTHO05D001408 4.4e-11 71.2 42 78.6
Nitab4.5_0000383g0300 Nicotiana tabacum HOM05D000878 ORTHO05D001408 4.4e-11 71.2 41 80.5
Nitab4.5_0001208g0020 Nicotiana tabacum HOM05D000878 ORTHO05D001408 4.4e-11 71.2 41 80.5
Potri.011G096300 Populus trichocarpa HOM05D000878 ORTHO05D001408 5.7e-11 70.9 43 79.1
Sabra11G0092600 Salix brachista HOM05D000878 ORTHO05D001408 5.7e-11 70.9 43 79.1
TWI38G1905 Tripterygium wilfordii HOM05D000878 ORTHO05D001408 5.7e-11 70.9 43 76.7
Hma1.2p1_0416F.1_g148670 Hydrangea macrophylla HOM05D000878 ORTHO05D001408 7.5e-11 70.5 41 80.5
Nn1g09065 Nelumbo nucifera HOM05D000878 ORTHO05D001408 7.5e-11 70.5 41 82.9
Aa31LG8G2230 Aethionema arabicum HOM05D000878 ORTHO05D001408 9.8e-11 70.1 43 79.1
CSS0050211 Camellia sinensis var. sinensis HOM05D000878 ORTHO05D001408 9.8e-11 70.1 42 81.0
Eucgr.F03251 Eucalyptus grandis HOM05D000878 ORTHO05D001408 9.8e-11 70.1 43 79.1
Nitab4.5_0000035g0050 Nicotiana tabacum HOM05D000878 ORTHO05D001408 9.8e-11 70.1 41 80.5
Nitab4.5_0005440g0040 Nicotiana tabacum HOM05D000878 ORTHO05D001408 9.8e-11 70.1 41 80.5
VMungo1127G2118 Vigna mungo HOM05D000878 ORTHO05D001408 9.8e-11 70.1 43 81.4
ECA240G4101 Erigeron canadensis HOM05D000878 ORTHO05D001408 1.3e-10 69.7 42 78.6
Gohir.A01G057700 Gossypium hirsutum HOM05D000878 ORTHO05D001408 1.3e-10 69.7 42 78.6
Gohir.D01G044100 Gossypium hirsutum HOM05D000878 ORTHO05D001408 1.3e-10 69.7 42 78.6
Gorai.002G063300 Gossypium raimondii HOM05D000878 ORTHO05D001408 1.3e-10 69.7 42 78.6
Peaxi162Scf00069g02021 Petunia axillaris HOM05D000878 ORTHO05D001408 1.3e-10 69.7 42 73.8
A06p01110 Brassica napus HOM05D000878 ORTHO05D001408 1.7e-10 69.3 43 76.7
BraA06t23338Z Brassica rapa HOM05D000878 ORTHO05D001408 1.7e-10 69.3 43 76.7
MBI06_g18012_MAGBIO Magnolia biondii HOM05D000878 ORTHO05D001408 1.7e-10 69.3 43 79.1
Potri.004G054200 Populus trichocarpa HOM05D000878 ORTHO05D001408 1.7e-10 69.3 42 76.2
Ciclev10016114m.g Citrus clementina HOM05D000878 ORTHO05D001408 2.2e-10 68.9 42 78.6
Nn1g04356 Nelumbo nucifera HOM05D000878 ORTHO05D001408 2.2e-10 68.9 42 78.6
Rhsim04G0024600 Rhododendron simsii HOM05D000878 ORTHO05D001408 2.2e-10 68.9 42 76.2
CAN.G292.7 Capsicum annuum HOM05D000878 ORTHO05D001408 2.8e-10 68.6 41 80.5
Lsat_1_v5_gn_5_127301 Lactuca sativa HOM05D000878 ORTHO05D001408 2.8e-10 68.6 42 76.2
Potri.001G376500 Populus trichocarpa HOM05D000878 ORTHO05D001408 2.8e-10 68.6 43 76.7
GSVIVG01021185001 Vitis vinifera HOM05D000878 ORTHO05D001408 2.8e-10 68.6 42 81.0
AL1G61640 Arabidopsis lyrata HOM05D000878 ORTHO05D001408 3.7e-10 68.2 43 74.4
AT1G53240 Arabidopsis thaliana HOM05D000878 ORTHO05D001408 3.7e-10 68.2 43 74.4
BcaB01g01549 Brassica carinata HOM05D000878 ORTHO05D001408 3.7e-10 68.2 43 74.4
BcaB02g10943 Brassica carinata HOM05D000878 ORTHO05D001408 3.7e-10 68.2 43 74.4
BcaB04g17101 Brassica carinata HOM05D000878 ORTHO05D001408 3.7e-10 68.2 43 74.4
BcaB07g33344 Brassica carinata HOM05D000878 ORTHO05D001408 3.7e-10 68.2 43 74.4
BcaC01g01371 Brassica carinata HOM05D000878 ORTHO05D001408 3.7e-10 68.2 43 74.4
BcaC08g43513 Brassica carinata HOM05D000878 ORTHO05D001408 3.7e-10 68.2 43 74.4
BcaC08g44067 Brassica carinata HOM05D000878 ORTHO05D001408 3.7e-10 68.2 43 74.4
A05p18470 Brassica napus HOM05D000878 ORTHO05D001408 3.7e-10 68.2 43 74.4
A08p01720 Brassica napus HOM05D000878 ORTHO05D001408 3.7e-10 68.2 43 74.4
C03p91280 Brassica napus HOM05D000878 ORTHO05D001408 3.7e-10 68.2 43 74.4
C06p09010 Brassica napus HOM05D000878 ORTHO05D001408 3.7e-10 68.2 43 74.4
C06p14630 Brassica napus HOM05D000878 ORTHO05D001408 3.7e-10 68.2 43 74.4
BolC3t21444H Brassica oleracea HOM05D000878 ORTHO05D001408 3.7e-10 68.2 43 74.4
BolC6t35979H Brassica oleracea HOM05D000878 ORTHO05D001408 3.7e-10 68.2 43 74.4
BolC6t36644H Brassica oleracea HOM05D000878 ORTHO05D001408 3.7e-10 68.2 43 74.4
BraA05t20739Z Brassica rapa HOM05D000878 ORTHO05D001408 3.7e-10 68.2 43 74.4
BraA08t32225Z Brassica rapa HOM05D000878 ORTHO05D001408 3.7e-10 68.2 43 74.4
CANSAT35G0995 Cannabis sativa HOM05D000878 ORTHO05D001408 3.7e-10 68.2 42 78.6
Carub.0001s4242 Capsella rubella HOM05D000878 ORTHO05D001408 3.7e-10 68.2 43 74.4
CARHR043460 Cardamine hirsuta HOM05D000878 ORTHO05D001408 3.7e-10 68.2 43 74.4
Thhalv10011552m.g Eutrema salsugineum HOM05D000878 ORTHO05D001408 3.7e-10 68.2 43 74.4
Oeu031214.2 Olea europaea HOM05D000878 ORTHO05D001408 3.7e-10 68.2 42 76.2
Sp1g39810 Schrenkiella parvula HOM05D000878 ORTHO05D001408 3.7e-10 68.2 43 74.4
TWI39G0631 Tripterygium wilfordii HOM05D000878 ORTHO05D001408 3.7e-10 68.2 43 74.4
HPP92_004046 Vanilla planifolia HOM05D000878 ORTHO05D001408 3.7e-10 68.2 42 76.2
arahy.Tifrunner.gnm1.ann1.3PZ9K2 Arachis hypogaea HOM05D000878 ORTHO05D001408 4.9e-10 67.8 43 79.1
FAN16G1257 Fragaria x ananassa HOM05D000878 ORTHO05D001408 4.9e-10 67.8 42 76.2
FAN21G0131 Fragaria x ananassa HOM05D000878 ORTHO05D001408 4.9e-10 67.8 42 76.2
HanXRQChr10g0304821 Helianthus annuus HOM05D000878 ORTHO05D001408 4.9e-10 67.8 42 76.2
QL08p026900 Quercus lobata HOM05D000878 ORTHO05D001408 4.9e-10 67.8 42 78.6
TAR629G1834 Trochodendron aralioides HOM05D000878 ORTHO05D001408 4.9e-10 67.8 42 73.8
Aqoxy4G00476 Aquilegia oxysepala HOM05D000878 ORTHO05D001408 6.3e-10 67.4 39 84.6
COL.COLO4_17607 Corchorus olitorius HOM05D000878 ORTHO05D006327 6.3e-10 67.4 42 76.2
FvH4_3g18670 Fragaria vesca HOM05D000878 ORTHO05D001408 6.3e-10 67.4 42 76.2
FAN11G1858 Fragaria x ananassa HOM05D000878 ORTHO05D001408 6.3e-10 67.4 42 76.2
HanXRQChr12g0373491 Helianthus annuus HOM05D000878 ORTHO05D001408 6.3e-10 67.4 42 76.2
Lj8A151T52 Lonicera japonica HOM05D000878 ORTHO05D001408 6.3e-10 67.4 42 76.2
Sabra16G0247900 Salix brachista HOM05D000878 ORTHO05D001408 6.3e-10 67.4 43 76.7
Solyc12g014180.2 Solanum lycopersicum HOM05D000878 ORTHO05D001408 6.3e-10 67.4 41 78.0
GSVIVG01014231001 Vitis vinifera HOM05D000878 ORTHO05D001408 6.3e-10 67.4 42 76.2
Prupe.4G170500 Prunus persica HOM05D000878 ORTHO05D001408 8.3e-10 67.0 42 76.2
Solyc07g062650.4 Solanum lycopersicum HOM05D000878 ORTHO05D001408 8.3e-10 67.0 42 76.2
Sopen07g030880 Solanum pennellii HOM05D000878 ORTHO05D001408 8.3e-10 67.0 42 76.2
PGSC0003DMG400012395 Solanum tuberosum HOM05D000878 ORTHO05D001408 8.3e-10 67.0 42 76.2
HPP92_024033 Vanilla planifolia HOM05D000878 ORTHO05D018218 8.3e-10 67.0 42 73.8
Cpa.g.sc131.66 Carica papaya HOM05D000878 ORTHO05D001408 1.1e-09 66.6 42 73.8
MD11G1259400 Malus domestica HOM05D000878 ORTHO05D001408 1.1e-09 66.6 42 73.8
PSO063G4507 Papaver somniferum HOM05D000878 ORTHO05D001408 1.1e-09 66.6 43 69.8
PSO782G1666 Papaver somniferum HOM05D000878 ORTHO05D001408 1.1e-09 66.6 43 69.8
Prupe.4G058400 Prunus persica HOM05D000878 ORTHO05D001408 1.1e-09 66.6 42 73.8
SalBow7G4777 Salvia bowleyana HOM05D000878 ORTHO05D001408 1.1e-09 66.6 41 73.2
Ciclev10008562m.g Citrus clementina HOM05D000878 ORTHO05D001408 1.4e-09 66.2 41 73.2
FAN25G1611 Fragaria x ananassa HOM05D000878 ORTHO05D001408 1.4e-09 66.2 42 73.8
Lalb_Chr19g0133911 Lupinus albus HOM05D000878 ORTHO05D001408 1.4e-09 66.2 43 76.7
Manes.03G103200 Manihot esculenta HOM05D000878 ORTHO05D001408 1.4e-09 66.2 43 76.7
RcHm_v2.0_Chr5g0031491 Rosa chinensis HOM05D000878 ORTHO05D001408 1.4e-09 66.2 42 73.8
Sopen12g005970 Solanum pennellii HOM05D000878 ORTHO05D001408 1.4e-09 66.2 41 75.6
Eucgr.F01209 Eucalyptus grandis HOM05D000878 ORTHO05D001408 1.8e-09 65.9 43 74.4
Sc16g0007440 Simmondsia chinensis HOM05D000878 ORTHO05D001408 1.8e-09 65.9 42 73.8
AL3G27360 Arabidopsis lyrata HOM05D000878 ORTHO05D001408 2.4e-09 65.5 43 74.4
AT3G15020 Arabidopsis thaliana HOM05D000878 ORTHO05D001408 2.4e-09 65.5 43 74.4
arahy.Tifrunner.gnm1.ann1.9BBP6D Arachis hypogaea HOM05D000878 ORTHO05D001408 2.4e-09 65.5 43 76.7
CAN.G162.21 Capsicum annuum HOM05D000878 ORTHO05D001408 2.4e-09 65.5 41 75.6
Cfa019593 Carpinus fangiana HOM05D000878 ORTHO05D001408 2.4e-09 65.5 42 71.4
Ca_23060_v3 Cicer arietinum L. HOM05D000878 ORTHO05D001408 2.4e-09 65.5 43 72.1
Haze_09352 Corylus avellana HOM05D000878 ORTHO05D001408 2.4e-09 65.5 42 71.4
Phvul.011G159000 Phaseolus vulgaris HOM05D000878 ORTHO05D001408 2.4e-09 65.5 43 76.7
PGSC0003DMG400015379 Solanum tuberosum HOM05D000878 ORTHO05D001408 2.4e-09 65.5 41 75.6
unitig_749.g13534 Utricularia gibba HOM05D000878 ORTHO05D001408 2.4e-09 65.5 40 77.5
CiPaw.11G163200 Carya illinoinensis HOM05D000878 ORTHO05D001408 3.1e-09 65.1 42 76.2
THA.LOC104798756 Tarenaya hassleriana HOM05D000878 ORTHO05D001408 3.1e-09 65.1 42 69.0
MSTRG.12879 Avicennia marina HOM05D000878 ORTHO05D001408 4.1e-09 64.7 41 73.2
Oeu005392.1 Olea europaea HOM05D000878 ORTHO05D001408 4.1e-09 64.7 42 73.8
CsaV3_4G008360 Cucumis sativus L. HOM05D000878 ORTHO05D001408 5.4e-09 64.3 41 73.2
Duzib235G0391 Durio zibethinus HOM05D000878 ORTHO05D001408 5.4e-09 64.3 42 69.0
Lalb_Chr01g0006731 Lupinus albus HOM05D000878 ORTHO05D001408 5.4e-09 64.3 43 74.4
Sp3g13220 Schrenkiella parvula HOM05D000878 ORTHO05D001408 5.4e-09 64.3 43 72.1
SGA_v2.0_scaffold130G34317 Striga asiatica HOM05D000878 ORTHO05D001408 5.4e-09 64.3 41 73.2
MSTRG.14954 Avicennia marina HOM05D000878 ORTHO05D001408 7.0e-09 63.9 42 71.4
MD03G1240100 Malus domestica HOM05D000878 ORTHO05D001408 7.0e-09 63.9 42 69.0
Manes.15G091900 Manihot esculenta HOM05D000878 ORTHO05D001408 7.0e-09 63.9 43 72.1
Medtr8g463760 Medicago truncatula HOM05D000878 ORTHO05D001408 7.0e-09 63.9 43 72.1
Aa31LG10G1910 Aethionema arabicum HOM05D000878 ORTHO05D001408 9.2e-09 63.5 43 67.4
BcaC08g44064 Brassica carinata HOM05D000878 ORTHO05D001408 1.2e-08 63.2 43 67.4
BolC6t36642H Brassica oleracea HOM05D000878 ORTHO05D001408 1.2e-08 63.2 43 67.4
Lalb_Chr03g0031071 Lupinus albus HOM05D000878 ORTHO05D001408 1.2e-08 63.2 43 72.1
THA.LOC104815567 Tarenaya hassleriana HOM05D000878 ORTHO05D001408 1.2e-08 63.2 42 69.0
ATR0602G293 Amborella trichopoda HOM05D000878 ORTHO05D001408 1.6e-08 62.8 42 71.4
CSS0004536 Camellia sinensis var. sinensis HOM05D000878 ORTHO05D018218 1.6e-08 62.8 45 71.1
Migut.H01978 Erythranthe guttata HOM05D000878 ORTHO05D001408 1.6e-08 62.8 41 73.2
Glyma.12G159300 Glycine max HOM05D000878 ORTHO05D001408 1.6e-08 62.8 43 74.4
Aqoxy1G03210 Aquilegia oxysepala HOM05D000878 ORTHO05D001408 2.0e-08 62.4 41 73.2
Hund02248 Selenicereus undatus HOM05D000878 ORTHO05D001408 2.0e-08 62.4 42 66.7
Thecc.06G174300 Theobroma cacao HOM05D000878 ORTHO05D001408 2.0e-08 62.4 42 71.4
TPR.G22541 Trifolium pratense HOM05D000878 ORTHO05D001408 2.0e-08 62.4 43 69.8
Zm00001eb158270 Zea mays HOM05D000878 ORTHO05D001408 2.0e-08 62.4 41 73.2
ClCG07G009970 Citrullus lanatus HOM05D000878 ORTHO05D001408 2.7e-08 62.0 41 70.7
MELO3C016095.2 Cucumis melo HOM05D000878 ORTHO05D001408 2.7e-08 62.0 41 70.7
Os01g0649100 Oryza sativa ssp. japonica HOM05D000878 ORTHO05D001408 2.7e-08 62.0 41 73.2
Sed0017885 Sechium edule HOM05D000878 ORTHO05D001408 2.7e-08 62.0 42 69.0
CARHR089980 Cardamine hirsuta HOM05D000878 ORTHO05D001408 3.5e-08 61.6 43 69.8
Psat4g180720 Pisum sativum HOM05D000878 ORTHO05D001408 5.9e-08 60.8 43 67.4
SEGI_02445 Sequoiadendron giganteum HOM05D000878 ORTHO05D001408 5.9e-08 60.8 39 74.4
CiPaw.12G114800 Carya illinoinensis HOM05D000878 ORTHO05D001408 7.8e-08 60.5 42 66.7
Sed0011466 Sechium edule HOM05D000878 ORTHO05D001408 1.0e-07 60.1 42 64.3
Zm00001eb344340 Zea mays HOM05D000878 ORTHO05D001408 1.3e-07 59.7 41 70.7
SalBow7G2468 Salvia bowleyana HOM05D000878 ORTHO05D001408 1.7e-07 59.3 37 75.7
Os05g0574400 Oryza sativa ssp. japonica HOM05D000878 ORTHO05D001408 2.3e-07 58.9 41 68.3
Lj3g0017702 Lotus japonicus HOM05D000878 ORTHO05D001408 2.9e-07 58.5 43 67.4
Ah.06g185160 Amaranthus hybridus HOM05D000878 ORTHO05D001408 3.9e-07 58.2 42 64.3
Hund02244 Selenicereus undatus HOM05D000878 ORTHO05D001408 5.0e-07 57.8 42 61.9
unitig_0.g2272 Utricularia gibba HOM05D000878 ORTHO05D001408 5.0e-07 57.8 40 67.5
Atru.chr2.2245 Acer truncatum HOM05D000878 ORTHO05D001408 6.6e-07 57.4 32 81.2
Pp3c12_8120 Physcomitrium patens HOM05D000878 ORTHO05D001408 8.6e-07 57.0 41 65.9
Zm00001eb296550 Zea mays HOM05D000878 ORTHO05D001408 8.6e-07 57.0 41 65.9
AUR62019540 Chenopodium quinoa HOM05D000878 ORTHO05D001408 1.1e-06 56.6 42 59.5
Gohir.A08G021724 Gossypium hirsutum HOM05D000878 ORTHO05D018218 1.5e-06 56.2 41 65.9
Pp3c4_20940 Physcomitrium patens HOM05D000878 ORTHO05D001408 1.9e-06 55.8 41 61.0
Ah.04g164380 Amaranthus hybridus HOM05D000878 ORTHO05D001408 4.3e-06 54.7 42 59.5
AagrBONN_evm.TU.Sc2ySwM_340.194 Anthoceros agrestis HOM05D000878 ORTHO05D001408 5.6e-06 54.3 39 66.7


User provided reference genes

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