Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 9.4e-229 797.0 554 100.0
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 9.0e-155 551.2 554 71.1
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 2.3e-150 536.6 554 69.9
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 2.2e-145 520.0 592 66.9
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 6.9e-139 498.4 553 68.4
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 9.1e-139 498.0 554 65.9
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 2.6e-138 496.5 554 72.7
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 6.1e-135 485.3 554 66.1
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 3.0e-134 483.0 554 64.3
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 3.9e-134 482.6 555 67.6
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 6.7e-134 481.9 556 64.4
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 8.8e-134 481.5 560 70.2
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 1.1e-133 481.1 554 66.2
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 1.1e-133 481.1 553 66.5
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 7.4e-133 478.4 560 66.6
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 2.8e-132 476.5 556 64.7
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 5.3e-131 472.2 556 64.2
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 2.6e-130 469.9 556 64.2
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 5.9e-130 468.8 555 64.3
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.0e-129 468.0 567 63.7
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 1.7e-129 467.2 559 64.8
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 5.0e-129 465.7 567 63.5
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 6.5e-129 465.3 556 63.7
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 3.2e-128 463.0 554 63.2
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 9.4e-128 461.5 555 62.3
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 1.2e-127 461.1 557 65.2
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 1.2e-127 461.1 545 63.5
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 5.2e-126 455.7 559 63.3
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 6.7e-126 455.3 558 65.6
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 2.0e-125 453.8 554 65.5
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 5.7e-125 452.2 559 68.3
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 3.7e-124 449.5 549 64.1
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 4.8e-124 449.1 579 60.6
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 3.1e-123 446.4 556 62.9
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 2.0e-122 443.7 564 62.6
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 7.7e-122 441.8 554 61.2
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 1.3e-121 441.0 555 63.4
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 1.3e-121 441.0 559 61.7
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 5.0e-121 439.1 557 62.1
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 6.5e-121 438.7 556 58.6
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 1.9e-120 437.2 556 64.0
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 5.5e-120 435.6 557 61.2
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 5.5e-120 435.6 554 63.9
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 7.2e-120 435.3 554 63.4
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 1.2e-119 434.5 557 58.2
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 2.1e-119 433.7 558 63.8
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 4.7e-119 432.6 561 63.5
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 8.0e-119 431.8 571 61.3
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 2.3e-118 430.3 556 62.4
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 2.3e-118 430.3 557 62.8
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 6.8e-118 428.7 563 61.8
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 2.0e-117 427.2 557 62.8
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 2.6e-117 426.8 560 60.2
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 2.6e-117 426.8 555 65.6
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 5.7e-117 425.6 554 63.2
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 9.7e-117 424.9 558 61.3
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 4.8e-116 422.5 557 60.9
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 4.8e-116 422.5 567 60.3
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 1.1e-115 421.4 556 62.8
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 4.1e-115 419.5 561 62.6
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 5.9e-114 415.6 560 62.5
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 7.7e-114 415.2 557 59.4
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 1.9e-112 410.6 557 58.5
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 3.2e-112 409.8 557 58.3
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 3.2e-112 409.8 580 60.7
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 5.5e-112 409.1 562 60.3
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 2.7e-111 406.8 561 59.9
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 3.6e-111 406.4 559 58.9
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 6.1e-111 405.6 559 60.5
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 5.2e-110 402.5 561 65.6
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 4.4e-109 399.4 560 61.2
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 6.3e-108 395.6 555 60.5
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 4.1e-107 392.9 601 54.7
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 1.6e-106 391.0 558 59.7
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 1.6e-106 391.0 562 59.8
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 4.5e-106 389.4 561 62.4
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 2.1e-103 380.6 558 59.7
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 4.7e-103 379.4 543 59.3
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 6.1e-103 379.0 555 58.2
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 6.1e-103 379.0 571 57.4
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.2e-101 374.8 555 58.7
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 3.4e-101 373.2 558 59.9
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 4.4e-101 372.9 585 56.1
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 9.8e-101 371.7 557 57.8
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 3.2e-99 366.7 557 57.6
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 8.6e-97 358.6 565 55.8
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 1.1e-96 358.2 561 59.2
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 3.3e-96 356.7 555 57.1
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 4.0e-94 349.7 555 59.5
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 4.9e-92 342.8 571 55.5
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 1.1e-91 341.7 565 52.6
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 3.2e-91 340.1 599 51.1
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 3.2e-91 340.1 566 52.1
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 7.0e-91 339.0 474 60.5
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 1.0e-89 335.1 563 56.8
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 3.6e-87 326.6 561 60.1
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 4.7e-87 326.2 557 54.0
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 7.5e-85 318.9 616 47.1
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 9.8e-85 318.5 556 53.2
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 9.8e-85 318.5 559 51.3
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 1.3e-84 318.2 567 51.7
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 2.9e-84 317.0 575 50.8
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 8.3e-84 315.5 567 49.0
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 1.9e-83 314.3 561 50.8
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 3.0e-81 307.0 566 50.9
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 6.6e-81 305.8 503 63.4
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 8.6e-81 305.4 574 49.3
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 3.3e-80 303.5 581 49.9
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 1.6e-79 301.2 233 76.8
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 2.3e-78 297.4 503 56.5
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.3e-78 297.4 234 75.6
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 1.4e-75 288.1 564 50.4
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 7.1e-75 285.8 454 57.9
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 2.7e-74 283.9 591 46.5
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 3.0e-73 280.4 469 55.9
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 8.6e-73 278.9 232 71.6
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 7.3e-72 275.8 166 88.0
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 6.2e-71 272.7 178 83.1
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 6.4e-68 262.7 335 65.7
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 6.0e-66 256.1 502 48.0
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 3.0e-65 253.8 155 87.1
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 9.3e-59 232.3 445 50.8
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 3.0e-57 227.3 178 70.8
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 6.9e-54 216.1 166 73.5
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 3.7e-47 193.7 551 37.7
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 4.5e-45 186.8 237 60.8
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 5.3e-38 163.3 407 45.7
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 2.1e-34 151.4 124 74.2
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 4.6e-34 150.2 241 55.2
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 1.3e-33 148.7 517 42.6
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.0e-29 134.8 199 56.3
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 6.5e-28 129.8 115 67.0
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 2.1e-26 124.8 75 85.3
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 2.3e-25 121.3 123 62.6
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 9.7e-24 115.9 82 69.5
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 1.1e-22 112.5 137 61.3
Nitab4.5_0003744g0040 Nicotiana tabacum HOM05D004889 ORTHO05D005478 5.3e-22 110.2 115 66.1
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 6.9e-22 109.8 111 63.1
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.3e-20 105.5 64 89.1
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 2.5e-19 101.3 168 41.7
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 4.7e-18 97.1 103 61.2
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 3.3e-16 90.9 107 57.0
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 1.8e-14 85.1 58 86.2
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 2.0e-13 81.6 86 59.3
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 2.9e-12 77.8 77 64.9
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 2.9e-12 77.8 77 64.9
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 5.0e-12 77.0 46 84.8
Nitab4.5_0000003g0090 Nicotiana tabacum HOM05D004889 ORTHO05D005478 3.0e-09 67.8 115 57.4
Oeu005056.1 Olea europaea HOM05D004889 ORTHO05D005478 6.7e-09 66.6 78 61.5
MCO02G371 Micromonas commoda HOM05D004889 ORTHO05D005478 3.1e-06 57.8 156 30.8


User provided reference genes

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