Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046442 Camellia sinensis var. sinensis HOM05D006096 ORTHO05D007775 4.3e-223 777.7 399 100.0
vmacro18587 Vaccinium macrocarpon HOM05D006096 ORTHO05D007775 6.2e-174 614.4 400 76.2
Actinidia28854 Actinidia chinensis HOM05D006096 ORTHO05D007775 2.2e-166 589.3 400 75.2
Rhsim08G0012600 Rhododendron simsii HOM05D006096 ORTHO05D007775 1.2e-148 530.4 399 69.4
Potri.005G073600 Populus trichocarpa HOM05D006096 ORTHO05D007775 1.3e-142 510.4 401 65.8
Atru.chr3.1373 Acer truncatum HOM05D006096 ORTHO05D007775 5.3e-141 505.0 408 65.7
Cpa.g.sc55.89 Carica papaya HOM05D006096 ORTHO05D007775 6.5e-139 498.0 396 64.6
TAR625G1553 Trochodendron aralioides HOM05D006096 ORTHO05D007775 1.4e-136 490.3 354 70.6
Duzib187G1253 Durio zibethinus HOM05D006096 ORTHO05D007775 4.4e-135 485.3 408 62.5
Prupe.6G191000 Prunus persica HOM05D006096 ORTHO05D007775 1.7e-134 483.4 411 60.8
Gohir.A10G085100 Gossypium hirsutum HOM05D006096 ORTHO05D007775 4.8e-134 481.9 408 61.0
RcHm_v2.0_Chr2g0112761 Rosa chinensis HOM05D006096 ORTHO05D007775 2.4e-133 479.6 411 60.6
TWI53G1189 Tripterygium wilfordii HOM05D006096 ORTHO05D007775 2.4e-133 479.6 414 62.8
MD01G1033500 Malus domestica HOM05D006096 ORTHO05D007775 1.6e-132 476.9 411 60.3
Gorai.011G113400 Gossypium raimondii HOM05D006096 ORTHO05D007775 2.0e-132 476.5 408 60.8
PGSC0003DMG400016160 Solanum tuberosum HOM05D006096 ORTHO05D007775 5.9e-132 474.9 408 60.8
Nn1g05418 Nelumbo nucifera HOM05D006096 ORTHO05D007775 2.2e-131 473.0 415 61.2
FvH4_1g20510 Fragaria vesca HOM05D006096 ORTHO05D007775 1.1e-130 470.7 411 59.6
Sopen11g004830 Solanum pennellii HOM05D006096 ORTHO05D007775 1.5e-130 470.3 408 60.5
Aqoxy6G00746 Aquilegia oxysepala HOM05D006096 ORTHO05D007775 3.2e-130 469.2 404 61.4
Cc07_g14840 Coffea canephora HOM05D006096 ORTHO05D007775 4.2e-130 468.8 412 60.0
Sc16g0000180 Simmondsia chinensis HOM05D006096 ORTHO05D007775 2.1e-129 466.5 407 59.2
MBI02_g02177_MAGBIO Magnolia biondii HOM05D006096 ORTHO05D007775 8.0e-129 464.5 416 60.3
Lsat_1_v5_gn_5_34320 Lactuca sativa HOM05D006096 ORTHO05D007775 1.5e-127 460.3 402 59.0
CANSAT01G2346 Cannabis sativa HOM05D006096 ORTHO05D007775 3.4e-127 459.1 443 56.0
Eucgr.H04751 Eucalyptus grandis HOM05D006096 ORTHO05D007775 8.3e-126 454.5 409 57.9
EL10Ac6g15136 Beta vulgaris HOM05D006096 ORTHO05D007775 5.4e-125 451.8 444 55.4
Psat5g090600 Pisum sativum HOM05D006096 ORTHO05D007775 7.0e-125 451.4 412 58.5
CAN.G905.37 Capsicum annuum HOM05D006096 ORTHO05D007775 1.2e-124 450.7 372 62.6
Medtr3g087010 Medicago truncatula HOM05D006096 ORTHO05D007775 1.6e-124 450.3 412 57.0
Peaxi162Scf00381g01013 Petunia axillaris HOM05D006096 ORTHO05D007775 2.0e-124 449.9 408 57.4
TPR.G15994 Trifolium pratense HOM05D006096 ORTHO05D007775 2.7e-124 449.5 412 57.3
Phvul.001G253200 Phaseolus vulgaris HOM05D006096 ORTHO05D007775 1.9e-122 443.4 414 57.0
Migut.H02345 Erythranthe guttata HOM05D006096 ORTHO05D007775 5.6e-122 441.8 405 58.3
Glyma.18G015800 Glycine max HOM05D006096 ORTHO05D007775 5.6e-122 441.8 410 58.3
Sed0027583 Sechium edule HOM05D006096 ORTHO05D007775 9.5e-122 441.0 412 57.8
AUR62001986 Chenopodium quinoa HOM05D006096 ORTHO05D007775 1.0e-120 437.6 458 52.4
Glyma.11G241200 Glycine max HOM05D006096 ORTHO05D007775 1.0e-120 437.6 408 57.8
Lj6g0005810 Lotus japonicus HOM05D006096 ORTHO05D007775 1.4e-120 437.2 418 56.9
Oeu033049.1 Olea europaea HOM05D006096 ORTHO05D007775 1.4e-120 437.2 374 61.0
COL.COLO4_27275 Corchorus olitorius HOM05D006096 ORTHO05D007775 6.8e-120 434.9 414 59.7
VMungo1383G2853 Vigna mungo HOM05D006096 ORTHO05D007775 4.4e-119 432.2 409 56.0
AT5G10320 Arabidopsis thaliana HOM05D006096 ORTHO05D007775 1.7e-118 430.3 411 56.4
Lalb_Chr19g0127391 Lupinus albus HOM05D006096 ORTHO05D007775 1.7e-118 430.3 414 57.0
BolC9t59480H Brassica oleracea HOM05D006096 ORTHO05D007775 7.0e-117 424.9 413 55.0
arahy.Tifrunner.gnm1.ann1.C4UPUA Arachis hypogaea HOM05D006096 ORTHO05D007775 9.2e-117 424.5 417 55.6
arahy.Tifrunner.gnm1.ann1.DD3ZZY Arachis hypogaea HOM05D006096 ORTHO05D007775 9.2e-117 424.5 444 53.2
BcaC04g19312 Brassica carinata HOM05D006096 ORTHO05D007775 1.6e-116 423.7 412 55.3
BraA10t44776Z Brassica rapa HOM05D006096 ORTHO05D007775 2.7e-116 422.9 413 55.0
C09p67070 Brassica napus HOM05D006096 ORTHO05D007775 5.9e-116 421.8 407 55.3
Hund13600 Selenicereus undatus HOM05D006096 ORTHO05D007775 7.8e-116 421.4 486 50.4
A10p27260 Brassica napus HOM05D006096 ORTHO05D007775 1.3e-115 420.6 417 54.4
AL6G20820 Arabidopsis lyrata HOM05D006096 ORTHO05D007775 8.6e-115 417.9 413 55.4
PSO210G0897 Papaver somniferum HOM05D006096 ORTHO05D007775 8.6e-115 417.9 403 56.3
BcaB08g37116 Brassica carinata HOM05D006096 ORTHO05D007775 1.2e-113 414.1 418 54.8
Dinv08841 Davidia involucrata HOM05D006096 ORTHO05D007775 2.8e-113 412.9 309 70.2
Sabra05G0060100 Salix brachista HOM05D006096 ORTHO05D007775 2.8e-113 412.9 404 56.7
ATR0684G225 Amborella trichopoda HOM05D006096 ORTHO05D007775 8.0e-113 411.4 416 53.6
ECA246G2908 Erigeron canadensis HOM05D006096 ORTHO05D007775 1.4e-112 410.6 433 52.9
FAN23G0863 Fragaria x ananassa HOM05D006096 ORTHO05D007775 1.2e-111 407.5 411 53.0
QL06p048476 Quercus lobata HOM05D006096 ORTHO05D007775 2.9e-110 402.9 317 64.4
Os04g0451100 Oryza sativa ssp. japonica HOM05D006096 ORTHO05D007775 8.9e-104 381.3 427 49.9
Aa31LG3G16830 Aethionema arabicum HOM05D006096 ORTHO05D007775 1.5e-103 380.6 420 50.2
ClCG07G017370 Citrullus lanatus HOM05D006096 ORTHO05D007775 1.1e-101 374.4 534 44.8
SGA_v2.0_scaffold111G31503 Striga asiatica HOM05D006096 ORTHO05D007775 4.6e-100 369.0 405 50.9
BcaC04g19315 Brassica carinata HOM05D006096 ORTHO05D007775 1.7e-99 367.1 294 64.3
Haze_24882 Corylus avellana HOM05D006096 ORTHO05D007775 2.3e-99 366.7 472 48.7
CiPaw.03G143900 Carya illinoinensis HOM05D006096 ORTHO05D007775 5.6e-98 362.1 337 60.5
Ciclev10026196m.g Citrus clementina HOM05D006096 ORTHO05D007775 9.5e-98 361.3 299 65.2
Cfa002624 Carpinus fangiana HOM05D006096 ORTHO05D007775 2.1e-97 360.1 321 61.1
Manes.13G095500 Manihot esculenta HOM05D006096 ORTHO05D007775 4.0e-96 355.9 321 58.9
CARHR202970 Cardamine hirsuta HOM05D006096 ORTHO05D007775 5.2e-96 355.5 296 59.5
FAN19G2919 Fragaria x ananassa HOM05D006096 ORTHO05D007775 5.2e-96 355.5 414 49.5
HPP92_011214 Vanilla planifolia HOM05D006096 ORTHO05D007775 3.4e-95 352.8 435 48.3
PSO447G0355 Papaver somniferum HOM05D006096 ORTHO05D007775 6.4e-94 348.6 407 49.9
SalBow3G4176 Salvia bowleyana HOM05D006096 ORTHO05D007775 6.4e-94 348.6 441 46.7
Thhalv10013818m.g Eutrema salsugineum HOM05D006096 ORTHO05D007775 4.1e-93 345.9 419 48.9
Zm00001eb081250 Zea mays HOM05D006096 ORTHO05D007775 4.1e-93 345.9 288 61.1
CARHR202960 Cardamine hirsuta HOM05D006096 ORTHO05D007775 9.2e-93 344.7 285 61.1
Nitab4.5_0004570g0020 Nicotiana tabacum HOM05D006096 ORTHO05D007775 1.6e-92 344.0 309 57.6
QL06p048506 Quercus lobata HOM05D006096 ORTHO05D007775 1.3e-91 340.9 335 57.0
Thecc.01G097900 Theobroma cacao HOM05D006096 ORTHO05D007775 6.6e-91 338.6 312 59.3
unitig_899.g14550 Utricularia gibba HOM05D006096 ORTHO05D007775 4.7e-89 332.4 443 46.3
Gohir.D10G103900 Gossypium hirsutum HOM05D006096 ORTHO05D007775 9.9e-87 324.7 308 56.8
Solyc11g009060.2 Solanum lycopersicum HOM05D006096 ORTHO05D007775 1.9e-85 320.5 309 56.3
CsaV3_4G004600 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.6e-84 317.4 303 58.4
AUR62003818 Chenopodium quinoa HOM05D006096 ORTHO05D007775 9.6e-82 308.1 278 57.6
DCAR_014211 Daucus carota HOM05D006096 ORTHO05D007775 4.8e-81 305.8 286 59.1
CsaV3_UNG122970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 4.0e-80 302.8 327 54.1
Haze_24873 Corylus avellana HOM05D006096 ORTHO05D007775 1.5e-79 300.8 445 44.7
HanXRQChr02g0032011 Helianthus annuus HOM05D006096 ORTHO05D007775 4.9e-78 295.8 314 52.9
FAN28G1526 Fragaria x ananassa HOM05D006096 ORTHO05D007775 6.0e-76 288.9 420 43.8
Pp3c26_3770 Physcomitrium patens HOM05D006096 ORTHO05D007775 6.0e-76 288.9 391 43.2
Mapoly0077s0016 Marchantia polymorpha HOM05D006096 ORTHO05D007775 1.4e-72 277.7 472 39.2
Sp6g33110 Schrenkiella parvula HOM05D006096 ORTHO05D007775 1.4e-72 277.7 317 48.6
MELO3C017606.2 Cucumis melo HOM05D006096 ORTHO05D007775 1.4e-69 267.7 571 35.9
Pp3c3_14090 Physcomitrium patens HOM05D006096 ORTHO05D007775 1.2e-68 264.6 423 38.1
Carub.0006s0879 Capsella rubella HOM05D006096 ORTHO05D007775 6.2e-65 252.3 301 51.5
CBR_g26374 Chara braunii HOM05D006096 ORTHO05D007775 9.3e-61 238.4 330 42.1
Ca_16518_v3 Cicer arietinum L. HOM05D006096 ORTHO05D007775 6.0e-60 235.7 318 43.7
CsaV3_UNG160190 Cucumis sativus L. HOM05D006096 ORTHO05D007775 5.1e-59 232.6 147 76.9
HanXRQChr15g0477621 Helianthus annuus HOM05D006096 ORTHO05D007775 1.5e-58 231.1 317 43.2
Nitab4.5_0000743g0130 Nicotiana tabacum HOM05D006096 ORTHO05D007775 6.9e-56 222.2 409 37.2
AagrBONN_evm.TU.Sc2ySwM_344.1220 Anthoceros agrestis HOM05D006096 ORTHO05D007775 3.5e-52 209.9 328 40.5
CBR_g53530 Chara braunii HOM05D006096 ORTHO05D007775 3.5e-52 209.9 267 42.3
MSTRG.23356 Avicennia marina HOM05D006096 ORTHO05D007775 9.7e-50 201.8 301 42.2
SMO301G0024 Selaginella moellendorffii HOM05D006096 ORTHO05D007775 2.0e-47 194.1 182 53.8
CARHR202980 Cardamine hirsuta HOM05D006096 ORTHO05D007775 3.4e-47 193.4 267 43.4
CsaV3_UNG223570 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.8e-43 181.0 233 45.5
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 1.3e-41 174.9 366 34.2
GSVIVG01006632001 Vitis vinifera HOM05D006096 ORTHO05D007775 4.1e-40 169.9 100 79.0
QL06p048511 Quercus lobata HOM05D006096 ORTHO05D007775 1.3e-38 164.9 99 77.8
Actinidia28243 Actinidia chinensis HOM05D006096 ORTHO05D009823 8.2e-33 145.6 217 44.2
Cre17.g719050 Chlamydomonas reinhardtii HOM05D006096 ORTHO05D007775 6.5e-30 136.0 285 31.6
Carub.0006s0878 Capsella rubella HOM05D006096 ORTHO05D007775 2.5e-29 134.0 85 74.1
Gohir.D10G103800 Gossypium hirsutum HOM05D006096 ORTHO05D007775 8.8e-27 125.6 84 69.0
BcaB02g08416 Brassica carinata HOM05D006096 ORTHO05D007775 1.7e-22 111.3 88 63.6
HanXRQChr02g0032001 Helianthus annuus HOM05D006096 ORTHO05D007775 4.7e-20 103.2 65 75.4
SEGI_01830 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 1.4e-19 101.7 128 45.3
Ah.02g123840 Amaranthus hybridus HOM05D006096 ORTHO05D007775 4.4e-18 96.7 67 62.7
Cc03_g11790 Coffea canephora HOM05D006096 ORTHO05D007775 7.5e-18 95.9 158 36.7
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 2.7e-15 87.4 247 30.4
SEGI_02986 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 3.6e-12 77.0 61 57.4
Nitab4.5_0004570g0030 Nicotiana tabacum HOM05D006096 ORTHO05D007775 3.0e-11 73.9 94 44.7
RcHm_v2.0_Chr4g0406191 Rosa chinensis HOM05D006096 ORTHO05D007775 1.8e-08 64.7 59 61.0
CsaV3_UNG160180 Cucumis sativus L. HOM05D006096 ORTHO05D007775 5.0e-06 56.6 87 40.2


User provided reference genes

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