Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046432 Camellia sinensis var. sinensis HOM05D007783 ORTHO05D009740 2.2e-36 155.6 93 100.0
CSS0007715 Camellia sinensis var. sinensis HOM05D007783 ORTHO05D009740 4.2e-35 151.4 93 97.8
Actinidia30505 Actinidia chinensis HOM05D007783 ORTHO05D009740 1.4e-14 83.2 57 71.9
Dinv10909 Davidia involucrata HOM05D007783 ORTHO05D009740 1.9e-14 82.8 57 73.7
FvH4_6g43650 Fragaria vesca HOM05D007783 ORTHO05D009740 1.6e-13 79.7 58 72.4
FAN05G3706 Fragaria x ananassa HOM05D007783 ORTHO05D009740 1.6e-13 79.7 58 72.4
CiPaw.03G163700 Carya illinoinensis HOM05D007783 ORTHO05D009740 6.0e-13 77.8 54 75.9
FAN09G3630 Fragaria x ananassa HOM05D007783 ORTHO05D009740 6.0e-13 77.8 58 70.7
Sabra17G0027500 Salix brachista HOM05D007783 ORTHO05D009740 6.0e-13 77.8 56 69.6
FAN14G2245 Fragaria x ananassa HOM05D007783 ORTHO05D009740 7.8e-13 77.4 58 70.7
Prupe.3G221700 Prunus persica HOM05D007783 ORTHO05D009740 1.3e-12 76.6 49 77.6
Sed0000870 Sechium edule HOM05D007783 ORTHO05D009740 1.3e-12 76.6 57 71.9
Sed0005014 Sechium edule HOM05D007783 ORTHO05D009740 1.3e-12 76.6 78 59.0
Thecc.02G163100 Theobroma cacao HOM05D007783 ORTHO05D009740 1.3e-12 76.6 56 71.4
Gorai.012G133100 Gossypium raimondii HOM05D007783 ORTHO05D009740 6.6e-12 74.3 78 57.7
QL08p033993 Quercus lobata HOM05D007783 ORTHO05D009740 6.6e-12 74.3 57 73.7
ClCG02G001700 Citrullus lanatus HOM05D000001 ORTHO05D000003 8.6e-12 73.9 78 56.4
Cpa.g.sc8.247 Carica papaya HOM05D007783 ORTHO05D009740 1.1e-11 73.6 76 61.8
Cfa014450 Carpinus fangiana HOM05D007783 ORTHO05D009740 1.1e-11 73.6 56 69.6
Ciclev10017097m.g Citrus clementina HOM05D007783 ORTHO05D009740 1.5e-11 73.2 49 79.6
Cc00_g19250 Coffea canephora HOM05D007783 ORTHO05D009740 1.5e-11 73.2 53 75.5
Cfa021131 Carpinus fangiana HOM05D007783 ORTHO05D009740 1.9e-11 72.8 57 70.2
CiPaw.04G118600 Carya illinoinensis HOM05D007783 ORTHO05D009740 1.9e-11 72.8 51 70.6
MELO3C018795.2 Cucumis melo HOM05D007783 ORTHO05D009740 1.9e-11 72.8 43 81.4
Nitab4.5_0002949g0070 Nicotiana tabacum HOM05D007783 ORTHO05D009740 1.9e-11 72.8 56 69.6
Nitab4.5_0017430g0010 Nicotiana tabacum HOM05D007783 ORTHO05D009740 1.9e-11 72.8 56 69.6
TWI36G1428 Tripterygium wilfordii HOM05D007783 ORTHO05D009740 2.5e-11 72.4 48 79.2
Cfa021551 Carpinus fangiana HOM05D007783 ORTHO05D009740 3.3e-11 72.0 77 58.4
COL.COLO4_13003 Corchorus olitorius HOM05D007783 ORTHO05D009740 5.6e-11 71.2 47 74.5
Gohir.A04G107200 Gossypium hirsutum HOM05D007783 ORTHO05D009740 5.6e-11 71.2 45 80.0
Peaxi162Scf00007g01310 Petunia axillaris HOM05D007783 ORTHO05D009740 9.5e-11 70.5 53 69.8
CANSAT64G1524 Cannabis sativa HOM05D007783 ORTHO05D009740 1.2e-10 70.1 58 67.2
Manes.10G111600 Manihot esculenta HOM05D007783 ORTHO05D009740 1.2e-10 70.1 58 69.0
Solyc07g052680.1 Solanum lycopersicum HOM05D007783 ORTHO05D009740 1.2e-10 70.1 57 71.9
Sopen07g026300 Solanum pennellii HOM05D007783 ORTHO05D009740 1.2e-10 70.1 57 71.9
PGSC0003DMG400026167 Solanum tuberosum HOM05D007783 ORTHO05D009740 1.2e-10 70.1 57 71.9
Cfa014449 Carpinus fangiana HOM05D007783 ORTHO05D009740 1.6e-10 69.7 55 72.7
Gohir.D04G147200 Gossypium hirsutum HOM05D007783 ORTHO05D009740 1.6e-10 69.7 98 48.0
RcHm_v2.0_Chr2g0160271 Rosa chinensis HOM05D007783 ORTHO05D009740 1.6e-10 69.7 58 69.0
TWI18G0657 Tripterygium wilfordii HOM05D007783 ORTHO05D009740 1.6e-10 69.7 48 75.0
Manes.07G029300 Manihot esculenta HOM05D007783 ORTHO05D009740 2.1e-10 69.3 47 80.9
Oeu041963.1 Olea europaea HOM05D007783 ORTHO05D009740 2.1e-10 69.3 52 73.1
Migut.H01214 Erythranthe guttata HOM05D007783 ORTHO05D009740 3.6e-10 68.6 59 72.9
Rhsim06G0156700 Rhododendron simsii HOM05D000213 ORTHO05D009740 3.6e-10 68.6 43 79.1
Gohir.A12G135100 Gossypium hirsutum HOM05D007783 ORTHO05D009740 4.7e-10 68.2 48 75.0
MSTRG.12290 Avicennia marina HOM05D007783 ORTHO05D009740 6.2e-10 67.8 60 71.7
HanXRQChr17g0563901 Helianthus annuus HOM05D007783 ORTHO05D009740 8.1e-10 67.4 84 52.4
EL10Ac3g05472 Beta vulgaris HOM05D007783 ORTHO05D009740 1.1e-09 67.0 46 73.9
Nn1g06962 Nelumbo nucifera HOM05D007783 ORTHO05D009740 1.1e-09 67.0 43 72.1
Gohir.D12G138800 Gossypium hirsutum HOM05D007783 ORTHO05D009740 1.4e-09 66.6 57 66.7
Gorai.008G150200 Gossypium raimondii HOM05D007783 ORTHO05D009740 1.4e-09 66.6 57 66.7
CDE05G0218 Ceratophyllum demersum HOM05D007783 ORTHO05D009740 3.1e-09 65.5 40 77.5
Lsat_1_v5_gn_8_129821 Lactuca sativa HOM05D007783 ORTHO05D009740 4.0e-09 65.1 52 65.4
Oeu011075.1 Olea europaea HOM05D007783 ORTHO05D009740 4.0e-09 65.1 54 63.0
Glyma.13G305400 Glycine max HOM05D007783 ORTHO05D009740 8.9e-09 63.9 77 55.8
Sp3g19900 Schrenkiella parvula HOM05D007783 ORTHO05D009740 2.0e-08 62.8 47 70.2
Aqoxy4G02125 Aquilegia oxysepala HOM05D007783 ORTHO05D009740 2.6e-08 62.4 54 64.8
Potri.007G120101 Populus trichocarpa HOM05D007783 ORTHO05D009740 2.6e-08 62.4 57 59.6
Sc21g0001790 Simmondsia chinensis HOM05D007783 ORTHO05D009740 2.6e-08 62.4 55 58.2
DCAR_012961 Daucus carota HOM05D007783 ORTHO05D009740 7.5e-08 60.8 61 57.4
Carub.0003s2223 Capsella rubella HOM05D007783 ORTHO05D009740 9.9e-08 60.5 98 50.0
C05p41370 Brassica napus HOM05D007783 ORTHO05D009740 1.3e-07 60.1 54 63.0
Lsat_1_v5_gn_3_43341 Lactuca sativa HOM05D007783 ORTHO05D009740 1.3e-07 60.1 57 57.9
Psat5g265520 Pisum sativum HOM05D007783 ORTHO05D009740 1.7e-07 59.7 58 58.6
Lj3g0010205 Lotus japonicus HOM05D007783 ORTHO05D009740 2.2e-07 59.3 59 64.4
Medtr2g089010 Medicago truncatula HOM05D007783 ORTHO05D009740 2.9e-07 58.9 56 62.5
A01p33040 Brassica napus HOM05D007783 ORTHO05D009740 3.7e-07 58.5 47 66.0
C01p42180 Brassica napus HOM05D007783 ORTHO05D009740 3.7e-07 58.5 47 66.0
BolC1t04180H Brassica oleracea HOM05D007783 ORTHO05D009740 3.7e-07 58.5 47 66.0
BraA01t03426Z Brassica rapa HOM05D007783 ORTHO05D009740 3.7e-07 58.5 47 66.0
CARHR097930 Cardamine hirsuta HOM05D007783 ORTHO05D009740 3.7e-07 58.5 54 61.1
AT3G22070 Arabidopsis thaliana HOM05D007783 ORTHO05D009740 4.9e-07 58.2 47 66.0
AL3G36260 Arabidopsis lyrata HOM05D007783 ORTHO05D009740 8.3e-07 57.4 54 59.3
ECA246G5319 Erigeron canadensis HOM05D007783 ORTHO05D009740 8.3e-07 57.4 57 50.9
THA.LOC104802538 Tarenaya hassleriana HOM05D007783 ORTHO05D009740 8.3e-07 57.4 46 67.4
Ca_01568_v3 Cicer arietinum L. HOM05D007783 ORTHO05D009740 1.1e-06 57.0 59 55.9
Phvul.005G112200 Phaseolus vulgaris HOM05D007783 ORTHO05D009740 1.9e-06 56.2 58 58.6
Sabra07G0097600 Salix brachista HOM05D007783 ORTHO05D009740 3.2e-06 55.5 57 59.6
HPP92_009398 Vanilla planifolia HOM05D048504 ORTHO05D009740 7.1e-06 54.3 47 63.8


User provided reference genes

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