Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046414 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 2.1e-64 248.8 120 100.0
Hma1.2p1_0349F.1_g132010 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 9.7e-22 107.1 124 52.4
Hma1.2p1_2624F.1_g325626 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 9.7e-22 107.1 124 52.4
Hma1.2p1_0349F.1_g131980 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 3.7e-21 105.1 123 50.4
Hma1.2p1_2624F.1_g325620 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 3.7e-21 105.1 123 50.4
CSS0000209 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 2.9e-18 95.5 109 48.6
CiPaw.01G115600 Carya illinoinensis HOM05D005927 ORTHO05D006952 5.0e-18 94.7 122 46.7
Prupe.1G167100 Prunus persica HOM05D005927 ORTHO05D006952 1.1e-17 93.6 111 51.4
Psat7g076040 Pisum sativum HOM05D005927 ORTHO05D006952 3.2e-17 92.0 104 48.1
MD04G1018100 Malus domestica HOM05D005927 ORTHO05D006952 9.4e-17 90.5 80 58.8
Nn1g08157 Nelumbo nucifera HOM05D005927 ORTHO05D006952 9.4e-17 90.5 111 48.6
arahy.Tifrunner.gnm1.ann1.N45PRE Arachis hypogaea HOM05D005927 ORTHO05D006952 2.1e-16 89.4 80 58.8
Manes.05G201886 Manihot esculenta HOM05D005927 ORTHO05D006952 2.1e-16 89.4 78 59.0
THA.LOC104804793 Tarenaya hassleriana HOM05D005927 ORTHO05D006952 2.7e-16 89.0 107 46.7
Thecc.04G193600 Theobroma cacao HOM05D005927 ORTHO05D006952 2.7e-16 89.0 124 43.5
CSS0010844 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 3.6e-16 88.6 109 46.8
Ciclev10006262m.g Citrus clementina HOM05D005927 ORTHO05D006952 3.6e-16 88.6 119 45.4
Potri.017G059800 Populus trichocarpa HOM05D005927 ORTHO05D006952 3.6e-16 88.6 101 49.5
Sabra17G0053700 Salix brachista HOM05D005927 ORTHO05D006952 3.6e-16 88.6 79 59.5
Sopen09g035160 Solanum pennellii HOM05D005927 ORTHO05D006952 3.6e-16 88.6 85 54.1
CSS0015614 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 4.7e-16 88.2 109 46.8
Solyc09g092235.1 Solanum lycopersicum HOM05D005927 ORTHO05D006952 6.1e-16 87.8 85 52.9
Thecc.04G193700 Theobroma cacao HOM05D005927 ORTHO05D006952 8.0e-16 87.4 108 50.0
arahy.Tifrunner.gnm1.ann1.DI9ALX Arachis hypogaea HOM05D005927 ORTHO05D006952 1.0e-15 87.0 80 57.5
Cpa.g.sc157.40 Carica papaya HOM05D005927 ORTHO05D006952 1.8e-15 86.3 80 57.5
FAN12G2699 Fragaria x ananassa HOM05D005927 ORTHO05D006952 1.8e-15 86.3 108 45.4
CSS0029764 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 2.3e-15 85.9 80 61.2
FvH4_4g13190 Fragaria vesca HOM05D005927 ORTHO05D006952 2.3e-15 85.9 108 45.4
Lj4g0008619 Lotus japonicus HOM05D005927 ORTHO05D006952 2.3e-15 85.9 80 57.5
VMungo0251G3792 Vigna mungo HOM05D005927 ORTHO05D006952 3.0e-15 85.5 80 57.5
CSS0025530 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 4.0e-15 85.1 109 50.5
Hma1.2p1_1201F.1_g266720 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 4.0e-15 85.1 80 58.8
Medtr8g083150 Medicago truncatula HOM05D005927 ORTHO05D006952 4.0e-15 85.1 103 45.6
Potri.001G321300 Populus trichocarpa HOM05D005927 ORTHO05D006952 4.0e-15 85.1 106 46.2
Ca_17999_v3 Cicer arietinum L. HOM05D000324 ORTHO05D004875 5.2e-15 84.7 80 56.2
Gohir.A10G129100 Gossypium hirsutum HOM05D005927 ORTHO05D006952 5.2e-15 84.7 109 48.6
Phvul.003G051400 Phaseolus vulgaris HOM05D005927 ORTHO05D006952 5.2e-15 84.7 82 54.9
QL06p026881 Quercus lobata HOM05D005927 ORTHO05D006952 5.2e-15 84.7 85 52.9
TPR.G11873 Trifolium pratense HOM05D005927 ORTHO05D006952 5.2e-15 84.7 80 55.0
Gohir.D10G137100 Gossypium hirsutum HOM05D005927 ORTHO05D006952 6.8e-15 84.3 109 48.6
Gorai.011G152200 Gossypium raimondii HOM05D005927 ORTHO05D006952 6.8e-15 84.3 109 48.6
PGSC0003DMG400026439 Solanum tuberosum HOM05D005927 ORTHO05D006952 6.8e-15 84.3 63 68.3
FAN17G1175 Fragaria x ananassa HOM05D005927 ORTHO05D006952 8.8e-15 84.0 80 55.0
FAN07G0035 Fragaria x ananassa HOM05D005927 ORTHO05D006952 1.5e-14 83.2 108 43.5
Potri.017G059900 Populus trichocarpa HOM05D005927 ORTHO05D006952 1.5e-14 83.2 125 46.4
CSS0047969 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 2.0e-14 82.8 80 58.8
Prupe.1G167200 Prunus persica HOM05D005927 ORTHO05D006952 2.6e-14 82.4 124 42.7
COL.COLO4_05438 Corchorus olitorius HOM05D005927 ORTHO05D006952 5.7e-14 81.3 80 55.0
Glyma.08G108200 Glycine max HOM05D005927 ORTHO05D006952 5.7e-14 81.3 81 55.6
CSS0021083 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 7.5e-14 80.9 80 55.0
CSS0030768 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 7.5e-14 80.9 80 56.2
CiPaw.02G063500 Carya illinoinensis HOM05D005927 ORTHO05D006952 7.5e-14 80.9 116 43.1
Atru.chr4.1553 Acer truncatum HOM05D005927 ORTHO05D006952 9.8e-14 80.5 122 43.4
Nn1g08158 Nelumbo nucifera HOM05D005927 ORTHO05D006952 9.8e-14 80.5 113 43.4
TWI09G0897 Tripterygium wilfordii HOM05D005927 ORTHO05D006952 9.8e-14 80.5 79 57.0
Glyma.05G151400 Glycine max HOM05D005927 ORTHO05D006952 1.3e-13 80.1 81 54.3
SalBow3G2584 Salvia bowleyana HOM05D005927 ORTHO05D006952 1.3e-13 80.1 80 55.0
Aqoxy2G03917 Aquilegia oxysepala HOM05D005927 ORTHO05D006952 2.2e-13 79.3 120 45.0
Eucgr.H02655 Eucalyptus grandis HOM05D005927 ORTHO05D006952 2.2e-13 79.3 106 42.5
A04p08120 Brassica napus HOM05D005927 ORTHO05D006952 2.8e-13 79.0 112 41.1
BraA04t16501Z Brassica rapa HOM05D005927 ORTHO05D006952 2.8e-13 79.0 112 41.1
CSS0027848 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 3.7e-13 78.6 80 53.8
Lalb_Chr25g0289221 Lupinus albus HOM05D005927 ORTHO05D006952 3.7e-13 78.6 72 58.3
Potri.001G321500 Populus trichocarpa HOM05D005927 ORTHO05D006952 3.7e-13 78.6 126 45.2
RcHm_v2.0_Chr4g0413341 Rosa chinensis HOM05D005927 ORTHO05D006952 6.3e-13 77.8 106 43.4
CANSAT78G2028 Cannabis sativa HOM05D005927 ORTHO05D006952 8.3e-13 77.4 81 51.9
CiPaw.01G115500 Carya illinoinensis HOM05D005927 ORTHO05D006952 8.3e-13 77.4 119 42.9
Oeu056432.1 Olea europaea HOM05D005927 ORTHO05D006952 1.1e-12 77.0 110 43.6
COL.COLO4_05437 Corchorus olitorius HOM05D005927 ORTHO05D006952 1.8e-12 76.3 121 44.6
BcaC02g09370 Brassica carinata HOM05D005927 ORTHO05D006952 2.4e-12 75.9 82 50.0
BolC4t25761H Brassica oleracea HOM05D005927 ORTHO05D006952 2.4e-12 75.9 82 50.0
Carub.0007s2841 Capsella rubella HOM05D005927 ORTHO05D006952 2.4e-12 75.9 122 41.8
CiPaw.02G064100 Carya illinoinensis HOM05D005927 ORTHO05D006952 2.4e-12 75.9 117 42.7
Nitab4.5_0019370g0010 Nicotiana tabacum HOM05D005927 ORTHO05D006952 2.4e-12 75.9 62 62.9
arahy.Tifrunner.gnm1.ann1.6R0Q3T Arachis hypogaea HOM05D005927 ORTHO05D006952 4.1e-12 75.1 80 51.2
C04p41800 Brassica napus HOM05D005927 ORTHO05D006952 4.1e-12 75.1 82 50.0
Ciclev10006252m.g Citrus clementina HOM05D005927 ORTHO05D006952 4.1e-12 75.1 123 45.5
Ah.13g077890 Amaranthus hybridus HOM05D005927 ORTHO05D006952 5.4e-12 74.7 87 46.0
MSTRG.14058 Avicennia marina HOM05D005927 ORTHO05D006952 5.4e-12 74.7 81 53.1
SGA_v2.0_scaffold7G04055 Striga asiatica HOM05D005927 ORTHO05D006952 5.4e-12 74.7 81 51.9
CsaV3_3G015740 Cucumis sativus L. HOM05D005927 ORTHO05D006952 7.0e-12 74.3 81 50.6
Rhsim09G0061200 Rhododendron simsii HOM05D005927 ORTHO05D006952 7.0e-12 74.3 80 53.8
Aa31LG8G10360 Aethionema arabicum HOM05D005927 ORTHO05D006952 9.1e-12 73.9 80 47.5
AL7G42420 Arabidopsis lyrata HOM05D005927 ORTHO05D006952 1.2e-11 73.6 81 48.1
Haze_11664 Corylus avellana HOM05D005927 ORTHO05D006952 1.6e-11 73.2 120 40.0
MELO3C006773.2 Cucumis melo HOM05D005927 ORTHO05D006952 1.6e-11 73.2 107 43.0
Lsat_1_v5_gn_2_47681 Lactuca sativa HOM05D005927 ORTHO05D006952 1.6e-11 73.2 66 54.5
Sp7g11810 Schrenkiella parvula HOM05D005927 ORTHO05D006952 2.7e-11 72.4 122 41.0
AT4G14010 Arabidopsis thaliana HOM05D005927 ORTHO05D006952 3.5e-11 72.0 81 46.9
CSS0031533 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 3.5e-11 72.0 58 63.8
Thhalv10026595m.g Eutrema salsugineum HOM05D005927 ORTHO05D006952 4.5e-11 71.6 82 47.6
Sed0010469 Sechium edule HOM05D005927 ORTHO05D006952 4.5e-11 71.6 81 49.4
BcaB02g08639 Brassica carinata HOM05D005927 ORTHO05D006952 7.7e-11 70.9 110 40.0
PGR083G0422 Punica granatum HOM05D005927 ORTHO05D006952 7.7e-11 70.9 81 48.1
PGR083G1024 Punica granatum HOM05D005927 ORTHO05D006952 7.7e-11 70.9 81 48.1
Cfa008638 Carpinus fangiana HOM05D005927 ORTHO05D006952 1.3e-10 70.1 105 41.9
Migut.N00426 Erythranthe guttata HOM05D005927 ORTHO05D006952 2.3e-10 69.3 82 47.6
ECA238G2825 Erigeron canadensis HOM05D005927 ORTHO05D006952 6.6e-10 67.8 117 41.9
PGR083G0017 Punica granatum HOM05D005927 ORTHO05D006952 1.1e-09 67.0 81 46.9
EL10Ac3g07444 Beta vulgaris HOM05D005927 ORTHO05D006952 1.5e-09 66.6 119 37.8
Duzib268G0459 Durio zibethinus HOM05D005927 ORTHO05D006952 1.5e-09 66.6 122 41.0
Manes.05G202960 Manihot esculenta HOM05D005927 ORTHO05D006952 1.5e-09 66.6 61 50.8
DCAR_026663 Daucus carota HOM05D005927 ORTHO05D006952 1.9e-09 66.2 62 56.5
unitig_21.g20554 Utricularia gibba HOM05D005927 ORTHO05D006952 2.5e-09 65.9 66 54.5
Cfa010561 Carpinus fangiana HOM05D003411 ORTHO05D003914 5.5e-09 64.7 74 51.4
CSS0014727 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 9.5e-09 63.9 55 54.5
Sed0016502 Sechium edule HOM05D005927 ORTHO05D006952 1.2e-08 63.5 119 40.3
A03p43360 Brassica napus HOM05D005927 ORTHO05D006952 1.6e-08 63.2 63 47.6
Aa31LG9G3330 Aethionema arabicum HOM05D005927 ORTHO05D006952 2.1e-08 62.8 69 44.9
BraA03t13474Z Brassica rapa HOM05D005927 ORTHO05D006952 3.6e-08 62.0 62 48.4
HanXRQChr09g0260481 Helianthus annuus HOM05D000668 ORTHO05D000516 3.6e-08 62.0 87 44.8
Haze_22049 Corylus avellana HOM05D005927 ORTHO05D006952 8.0e-08 60.8 62 50.0
DCAR_001205 Daucus carota HOM05D001053 ORTHO05D008021 8.0e-08 60.8 98 42.9
Gohir.D08G225600 Gossypium hirsutum HOM05D000668 ORTHO05D000516 1.4e-07 60.1 120 35.8
Gorai.004G239600 Gossypium raimondii HOM05D000668 ORTHO05D000516 1.4e-07 60.1 120 35.8
CARHR220010 Cardamine hirsuta HOM05D005927 ORTHO05D006952 2.3e-07 59.3 121 36.4
CAN.G339.33 Capsicum annuum HOM05D000668 ORTHO05D000516 3.0e-07 58.9 122 35.2
Haze_04895 Corylus avellana HOM05D000668 ORTHO05D000516 3.0e-07 58.9 121 34.7
AUR62015303 Chenopodium quinoa HOM05D000668 ORTHO05D000516 5.2e-07 58.2 81 39.5
Aqoxy5G00719 Aquilegia oxysepala HOM05D000668 ORTHO05D000516 6.8e-07 57.8 81 43.2
AL7G39500 Arabidopsis lyrata HOM05D000668 ORTHO05D000516 6.8e-07 57.8 105 40.0
BcaB03g14615 Brassica carinata HOM05D005927 ORTHO05D006952 6.8e-07 57.8 57 49.1
Thhalv10026579m.g Eutrema salsugineum HOM05D000668 ORTHO05D000516 6.8e-07 57.8 105 40.0
Gohir.A09G207300 Gossypium hirsutum HOM05D005927 ORTHO05D006952 6.8e-07 57.8 107 36.4
Carub.0007s2586 Capsella rubella HOM05D000668 ORTHO05D000516 8.9e-07 57.4 113 38.9
Ciclev10023750m.g Citrus clementina HOM05D000668 ORTHO05D000516 1.2e-06 57.0 118 38.1
Manes.03G194800 Manihot esculenta HOM05D000668 ORTHO05D000516 1.2e-06 57.0 120 35.8
QL10p053329 Quercus lobata HOM05D000668 ORTHO05D000516 1.2e-06 57.0 80 42.5
QL10p054530 Quercus lobata HOM05D000668 ORTHO05D000516 1.2e-06 57.0 80 42.5
AT4G15800 Arabidopsis thaliana HOM05D000668 ORTHO05D000516 1.5e-06 56.6 110 35.5
Duzib177G0542 Durio zibethinus HOM05D000668 ORTHO05D000516 1.5e-06 56.6 81 45.7
Sp3g21500 Schrenkiella parvula HOM05D005927 ORTHO05D006952 1.5e-06 56.6 64 46.9
Peaxi162Scf00037g00921 Petunia axillaris HOM05D000668 ORTHO05D000516 2.6e-06 55.8 83 43.4
Potri.005G025800 Populus trichocarpa HOM05D000668 ORTHO05D000516 2.6e-06 55.8 81 40.7
CSS0034518 Camellia sinensis var. sinensis HOM05D000668 ORTHO05D000516 3.4e-06 55.5 81 44.4
HanXRQChr06g0163881 Helianthus annuus HOM05D000668 ORTHO05D000516 3.4e-06 55.5 85 42.4
Nitab4.5_0008329g0040 Nicotiana tabacum HOM05D000668 ORTHO05D000516 3.4e-06 55.5 83 43.4
PSO017G2903 Papaver somniferum HOM05D005927 ORTHO05D006952 3.4e-06 55.5 78 43.6
EL10Ac3g06595 Beta vulgaris HOM05D000668 ORTHO05D000516 4.4e-06 55.1 125 35.2
Cfa005951 Carpinus fangiana HOM05D000668 ORTHO05D000516 4.4e-06 55.1 82 42.7
MD11G1304400 Malus domestica HOM05D000668 ORTHO05D000516 4.4e-06 55.1 81 42.0
Manes.15G012500 Manihot esculenta HOM05D000668 ORTHO05D000516 4.4e-06 55.1 114 36.8
Prupe.6G321200 Prunus persica HOM05D000668 ORTHO05D000516 4.4e-06 55.1 81 42.0
Rhsim07G0187600 Rhododendron simsii HOM05D000668 ORTHO05D000516 4.4e-06 55.1 81 42.0
TWI53G0565 Tripterygium wilfordii HOM05D000668 ORTHO05D000516 4.4e-06 55.1 97 38.1
Atru.chr2.27 Acer truncatum HOM05D000668 ORTHO05D000516 5.7e-06 54.7 120 35.8
Ca_05802_v3 Cicer arietinum L. HOM05D000668 ORTHO05D000516 5.7e-06 54.7 115 35.7
Gohir.A08G208700 Gossypium hirsutum HOM05D000668 ORTHO05D000516 5.7e-06 54.7 120 34.2
Hma1.2p1_0209F.1_g088620 Hydrangea macrophylla HOM05D000668 ORTHO05D000516 5.7e-06 54.7 121 33.9
CARHR002250 Cardamine hirsuta HOM05D000668 ORTHO05D000516 7.5e-06 54.3 126 35.7
Hma1.2p1_1212F.1_g267290 Hydrangea macrophylla HOM05D000668 ORTHO05D000516 7.5e-06 54.3 81 39.5
Lj1g0016255 Lotus japonicus HOM05D000668 ORTHO05D000516 7.5e-06 54.3 115 34.8
Phvul.007G197000 Phaseolus vulgaris HOM05D000668 ORTHO05D000516 7.5e-06 54.3 123 35.8
SGA_v2.0_scaffold172G38990 Striga asiatica HOM05D000668 ORTHO05D000516 7.5e-06 54.3 81 39.5
BcaC06g33448 Brassica carinata HOM05D000668 ORTHO05D000516 9.8e-06 53.9 81 43.2
C07p47400 Brassica napus HOM05D000668 ORTHO05D000516 9.8e-06 53.9 81 43.2
BolC7t45267H Brassica oleracea HOM05D000668 ORTHO05D000516 9.8e-06 53.9 81 43.2
MD03G1284900 Malus domestica HOM05D000668 ORTHO05D000516 9.8e-06 53.9 81 42.0
MD16G1169200 Malus domestica HOM05D000668 ORTHO05D000516 9.8e-06 53.9 116 34.5
Nn3g21435 Nelumbo nucifera HOM05D000668 ORTHO05D000516 9.8e-06 53.9 81 43.2
Sc09g0002960 Simmondsia chinensis HOM05D000668 ORTHO05D000516 9.8e-06 53.9 115 35.7


User provided reference genes

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