Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 2.3e-82 308.9 166 100.0
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 2.9e-64 248.8 171 80.1
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 1.4e-63 246.5 171 78.9
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 8.6e-61 237.3 169 76.9
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 6.2e-59 231.1 169 75.1
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 1.8e-58 229.6 166 76.5
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 5.8e-57 224.6 161 77.6
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 4.6e-54 214.9 169 69.8
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 4.6e-54 214.9 173 67.6
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 7.3e-52 207.6 184 66.8
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 2.8e-51 205.7 169 68.0
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 1.4e-50 203.4 170 67.1
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 2.4e-50 202.6 169 66.3
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 9.0e-50 200.7 166 69.3
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 2.0e-49 199.5 162 68.5
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 2.6e-49 199.1 168 67.9
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 5.8e-49 198.0 171 69.0
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 5.8e-49 198.0 168 66.7
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 7.6e-49 197.6 167 67.1
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 1.3e-48 196.8 168 66.7
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 1.7e-48 196.4 168 66.1
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 2.9e-48 195.7 171 66.7
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 3.8e-48 195.3 164 67.7
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 4.9e-48 194.9 165 67.9
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 1.9e-47 193.0 168 65.5
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 2.4e-47 192.6 168 67.3
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 7.1e-47 191.0 165 65.5
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 9.3e-47 190.7 169 65.7
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 9.3e-47 190.7 167 62.3
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.6e-46 189.9 169 66.3
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 2.7e-46 189.1 165 65.5
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 2.7e-46 189.1 164 65.2
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.7e-46 189.1 165 67.9
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 7.8e-46 187.6 172 65.1
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 1.0e-45 187.2 156 68.6
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 2.3e-45 186.0 165 64.8
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 3.0e-45 185.7 158 67.1
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 6.6e-45 184.5 171 62.0
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 6.6e-45 184.5 164 62.8
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 8.7e-45 184.1 166 63.9
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 8.7e-45 184.1 155 65.2
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 8.7e-45 184.1 166 62.0
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 8.7e-45 184.1 166 62.0
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 8.7e-45 184.1 168 65.5
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 1.1e-44 183.7 129 78.3
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 1.9e-44 183.0 175 62.9
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 3.3e-44 182.2 165 63.0
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 4.3e-44 181.8 152 69.1
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 1.3e-43 180.3 156 66.0
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 1.3e-43 180.3 156 66.0
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 2.1e-43 179.5 165 63.0
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 2.1e-43 179.5 156 66.0
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 2.1e-43 179.5 162 66.7
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 2.1e-43 179.5 169 62.7
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 3.6e-43 178.7 167 61.7
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 4.8e-43 178.3 165 62.4
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 1.1e-42 177.2 150 66.0
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 4.0e-42 175.3 167 64.1
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 5.3e-42 174.9 158 63.3
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 9.0e-42 174.1 164 63.4
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 1.5e-41 173.3 159 65.4
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 2.6e-41 172.6 165 63.0
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 2.6e-41 172.6 160 63.8
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 2.6e-41 172.6 176 56.8
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 5.8e-41 171.4 185 56.8
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 9.9e-41 170.6 167 61.7
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 1.3e-40 170.2 164 62.2
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 1.3e-40 170.2 145 68.3
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 1.3e-40 170.2 159 61.6
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 3.8e-40 168.7 151 64.2
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 2.4e-39 166.0 171 61.4
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 2.4e-39 166.0 201 52.7
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 3.2e-39 165.6 154 63.0
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 9.3e-39 164.1 112 80.4
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 1.2e-38 163.7 143 65.0
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 1.6e-38 163.3 154 62.3
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 1.6e-38 163.3 154 62.3
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 1.6e-38 163.3 155 61.9
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 6.0e-38 161.4 155 60.6
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 6.7e-37 157.9 226 50.4
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 1.9e-36 156.4 137 66.4
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 3.3e-36 155.6 155 58.7
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 5.6e-36 154.8 167 57.5
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 7.4e-36 154.5 136 66.2
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 1.6e-35 153.3 164 60.4
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 2.1e-35 152.9 159 60.4
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.1e-35 152.9 156 63.5
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 3.7e-35 152.1 154 60.4
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 4.8e-35 151.8 164 57.9
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 6.2e-35 151.4 154 60.4
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 1.1e-34 150.6 134 67.2
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 1.1e-34 150.6 134 67.2
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 2.4e-34 149.4 154 60.4
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 3.1e-34 149.1 154 59.7
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 2.6e-33 146.0 152 56.6
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 7.6e-33 144.4 162 57.4
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.7e-32 143.3 164 56.1
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 2.2e-32 142.9 154 55.8
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 3.8e-32 142.1 184 51.1
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 6.5e-32 141.4 152 56.6
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 6.5e-32 141.4 161 52.8
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 6.5e-32 141.4 169 53.8
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 3.2e-31 139.0 162 52.5
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 7.1e-31 137.9 145 53.1
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 7.1e-31 137.9 127 62.2
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 4.6e-30 135.2 113 66.4
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 1.0e-29 134.0 162 53.1
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 1.3e-29 133.7 157 52.2
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 4.3e-28 128.6 142 54.2
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 4.3e-28 128.6 148 55.4
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 4.3e-28 128.6 151 49.7
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 1.3e-27 127.1 108 68.5
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 1.6e-27 126.7 173 50.9
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 6.2e-27 124.8 153 54.2
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 1.4e-26 123.6 102 65.7
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 1.8e-26 123.2 159 48.4
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.4e-26 122.9 153 54.2
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 4.0e-26 122.1 154 50.0
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 1.3e-24 117.1 108 63.0
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 8.4e-24 114.4 163 47.9
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 1.4e-23 113.6 153 45.8
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 7.1e-23 111.3 114 55.3
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 3.5e-22 109.0 171 43.9
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 6.1e-22 108.2 114 57.9
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 1.0e-21 107.5 81 71.6
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.3e-21 106.3 98 62.2
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 3.0e-21 105.9 114 57.0
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 6.7e-21 104.8 91 60.4
COL.COLO4_28098 Corchorus olitorius HOM05D004927 ORTHO05D005798 7.4e-20 101.3 96 64.6
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 6.3e-19 98.2 149 46.3
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 1.1e-18 97.4 109 51.4
Hma1.2p1_2767F.1_g328170 Hydrangea macrophylla HOM05D004927 ORTHO05D005798 9.0e-18 94.4 86 66.3
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 4.5e-17 92.0 81 63.0
Cfa018832 Carpinus fangiana HOM05D004927 ORTHO05D005798 1.9e-15 86.7 84 61.9
Oeu037712.1 Olea europaea HOM05D004927 ORTHO05D005798 3.2e-15 85.9 56 75.0
SMO334G0034 Selaginella moellendorffii HOM05D004927 ORTHO05D005798 1.6e-14 83.6 143 41.3
Gohir.D09G248000 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.9e-13 79.0 75 60.0
Gohir.D01G081600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.1e-12 77.4 58 72.4
Gohir.D07G062100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.1e-12 77.4 58 72.4
Gorai.007G057300 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.1e-12 77.4 58 72.4
Gohir.D11G291800 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.8e-11 72.8 56 71.4
AUR62029623 Chenopodium quinoa HOM05D004927 ORTHO05D005798 1.8e-10 70.1 50 74.0
ECA232G0032 Erigeron canadensis HOM05D004927 ORTHO05D005798 4.1e-10 68.9 99 52.5
Gohir.D09G247201 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.5e-09 67.0 61 65.6
SEGI_27141 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 7.7e-09 64.7 55 56.4
BraA02t09201Z Brassica rapa HOM05D004927 ORTHO05D005798 1.7e-08 63.5 93 50.5
Cpa.g.sc13.128 Carica papaya HOM05D004927 ORTHO05D005798 2.9e-08 62.8 59 62.7
SEGI_01314 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 1.1e-07 60.8 45 66.7


User provided reference genes

Program Settings