Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046369 Camellia sinensis var. sinensis HOM05D005048 ORTHO05D006420 8.8e-218 760.0 380 100.0
Actinidia32670 Actinidia chinensis HOM05D005048 ORTHO05D006420 4.0e-186 654.8 376 87.2
Rhsim03G0239600 Rhododendron simsii HOM05D005048 ORTHO05D006420 2.0e-182 642.5 376 84.8
Hma1.2p1_1151F.1_g261870 Hydrangea macrophylla HOM05D005048 ORTHO05D006420 1.7e-173 612.8 379 81.5
Haze_25781 Corylus avellana HOM05D005048 ORTHO05D006420 2.3e-170 602.4 376 79.3
GSVIVG01015352001 Vitis vinifera HOM05D005048 ORTHO05D006420 5.2e-170 601.3 376 80.1
QL10p015858 Quercus lobata HOM05D005048 ORTHO05D006420 1.4e-167 593.2 377 79.3
Ciclev10008139m.g Citrus clementina HOM05D005048 ORTHO05D006420 1.9e-167 592.8 377 77.5
CiPaw.04G161700 Carya illinoinensis HOM05D005048 ORTHO05D006420 4.3e-164 581.6 379 76.0
Thecc.09G106000 Theobroma cacao HOM05D005048 ORTHO05D006420 2.3e-162 575.9 379 76.0
Cfa003227 Carpinus fangiana HOM05D005048 ORTHO05D006420 1.2e-161 573.5 377 76.7
Gorai.001G007100 Gossypium raimondii HOM05D005048 ORTHO05D006420 2.6e-161 572.4 377 75.3
TAR383G0565 Trochodendron aralioides HOM05D005048 ORTHO05D006420 2.6e-161 572.4 376 75.5
Gohir.A07G004800 Gossypium hirsutum HOM05D005048 ORTHO05D006420 7.5e-161 570.9 377 75.1
Potri.017G118801 Populus trichocarpa HOM05D005048 ORTHO05D006420 3.7e-160 568.5 379 75.2
Gohir.D07G007400 Gossypium hirsutum HOM05D005048 ORTHO05D006420 2.4e-159 565.8 377 74.8
Aqoxy5G01302 Aquilegia oxysepala HOM05D005048 ORTHO05D006420 9.2e-159 563.9 377 74.3
Prupe.7G225700 Prunus persica HOM05D005048 ORTHO05D006420 1.2e-158 563.5 379 74.7
MD02G1057100 Malus domestica HOM05D005048 ORTHO05D006420 2.7e-158 562.4 379 74.1
PGSC0003DMG400018273 Solanum tuberosum HOM05D005048 ORTHO05D006420 3.5e-158 562.0 378 73.0
ClCG05G003020 Citrullus lanatus HOM05D005048 ORTHO05D006420 1.0e-157 560.5 378 73.8
Atru.chr7.1383 Acer truncatum HOM05D005048 ORTHO05D006420 1.3e-157 560.1 366 76.0
Hund09223 Selenicereus undatus HOM05D005048 ORTHO05D006420 1.3e-157 560.1 379 73.9
CsaV3_3G010630 Cucumis sativus L. HOM05D005048 ORTHO05D006420 1.7e-157 559.7 377 73.7
arahy.Tifrunner.gnm1.ann1.T6QICJ Arachis hypogaea HOM05D005048 ORTHO05D006420 3.0e-157 558.9 377 73.2
RcHm_v2.0_Chr2g0091251 Rosa chinensis HOM05D005048 ORTHO05D006420 5.1e-157 558.1 377 74.0
Sopen01g044930 Solanum pennellii HOM05D005048 ORTHO05D006420 5.1e-157 558.1 378 72.8
Aqoxy1G00313 Aquilegia oxysepala HOM05D005048 ORTHO05D006420 1.5e-156 556.6 377 74.0
arahy.Tifrunner.gnm1.ann1.TTP0Q7 Arachis hypogaea HOM05D005048 ORTHO05D006420 1.5e-156 556.6 377 72.9
Sabra17G0098100 Salix brachista HOM05D005048 ORTHO05D006420 7.3e-156 554.3 404 69.6
Cc01_g04910 Coffea canephora HOM05D005048 ORTHO05D006420 9.5e-156 553.9 379 72.8
FvH4_1g05550 Fragaria vesca HOM05D005048 ORTHO05D006420 9.5e-156 553.9 377 72.9
TPR.G23489 Trifolium pratense HOM05D005048 ORTHO05D006420 1.6e-155 553.1 378 72.5
CAN.G1379.35 Capsicum annuum HOM05D005048 ORTHO05D006420 4.7e-155 551.6 378 71.4
Lalb_Chr05g0223041 Lupinus albus HOM05D005048 ORTHO05D006420 1.8e-154 549.7 374 74.1
Nn2g11663 Nelumbo nucifera HOM05D005048 ORTHO05D006420 1.8e-154 549.7 376 71.5
MELO3C006282.2 Cucumis melo HOM05D005048 ORTHO05D006420 2.4e-154 549.3 378 72.8
Peaxi162Scf00231g00512 Petunia axillaris HOM05D005048 ORTHO05D006420 2.4e-154 549.3 378 71.4
EL10Ac8g18435 Beta vulgaris HOM05D005048 ORTHO05D006420 3.1e-154 548.9 413 67.8
FAN23G2083 Fragaria x ananassa HOM05D005048 ORTHO05D006420 6.8e-154 547.7 377 72.4
FAN28G0981 Fragaria x ananassa HOM05D005048 ORTHO05D006420 1.2e-153 547.0 390 70.8
Lj4g0020985 Lotus japonicus HOM05D005048 ORTHO05D006420 1.5e-153 546.6 378 71.7
Ca_17323_v3 Cicer arietinum L. HOM05D005048 ORTHO05D006420 2.0e-153 546.2 378 72.2
COL.COLO4_37106 Corchorus olitorius HOM05D005048 ORTHO05D006420 2.0e-153 546.2 383 72.3
VMungo0251G3001 Vigna mungo HOM05D005048 ORTHO05D006420 2.6e-153 545.8 374 72.7
PGR102G2767 Punica granatum HOM05D005048 ORTHO05D006420 4.4e-153 545.0 378 72.8
Medtr8g103060 Medicago truncatula HOM05D005048 ORTHO05D006420 7.6e-153 544.3 378 71.7
Glyma.05G229400 Glycine max HOM05D005048 ORTHO05D006420 1.3e-152 543.5 377 71.1
Glyma.14G218300 Glycine max HOM05D005048 ORTHO05D006420 1.3e-152 543.5 377 71.1
Eucgr.C03804 Eucalyptus grandis HOM05D005048 ORTHO05D006420 4.9e-152 541.6 373 71.6
Oeu026966.2 Olea europaea HOM05D005048 ORTHO05D006420 1.2e-150 537.0 379 71.5
TWI60G0019 Tripterygium wilfordii HOM05D005048 ORTHO05D006420 1.2e-150 537.0 377 72.9
TWI81G0001 Tripterygium wilfordii HOM05D005048 ORTHO05D006420 1.2e-150 537.0 377 72.7
vmacro06232 Vaccinium macrocarpon HOM05D005048 ORTHO05D006420 1.2e-150 537.0 376 75.3
HanXRQChr03g0061391 Helianthus annuus HOM05D005048 ORTHO05D006420 2.7e-150 535.8 373 71.0
Duzib168G1040 Durio zibethinus HOM05D005048 ORTHO05D006420 1.3e-149 533.5 379 71.5
AUR62021458 Chenopodium quinoa HOM05D005048 ORTHO05D006420 3.9e-149 531.9 381 69.8
Migut.D01920 Erythranthe guttata HOM05D005048 ORTHO05D006420 1.1e-148 530.4 380 71.8
PSO210G5559 Papaver somniferum HOM05D005048 ORTHO05D006420 1.9e-148 529.6 376 71.3
ECA240G4205 Erigeron canadensis HOM05D005048 ORTHO05D006420 9.6e-148 527.3 378 70.4
FAN19G2567 Fragaria x ananassa HOM05D005048 ORTHO05D006420 9.6e-148 527.3 377 71.1
Cpa.g.sc23.64 Carica papaya HOM05D005048 ORTHO05D006420 1.1e-146 523.9 401 67.1
AL7G19480 Arabidopsis lyrata HOM05D005048 ORTHO05D006420 3.1e-146 522.3 380 69.5
SalBow2G2764 Salvia bowleyana HOM05D005048 ORTHO05D006420 4.0e-146 521.9 382 70.9
PSO210G2605 Papaver somniferum HOM05D005048 ORTHO05D006420 5.2e-146 521.5 401 67.3
THA.LOC104799066 Tarenaya hassleriana HOM05D005048 ORTHO05D006420 7.6e-145 517.7 379 68.6
Aa31LG2G18290 Aethionema arabicum HOM05D005048 ORTHO05D006420 7.8e-142 507.7 382 67.8
HPP92_003926 Vanilla planifolia HOM05D005048 ORTHO05D006420 1.7e-141 506.5 379 66.2
BcaB08g35458 Brassica carinata HOM05D005048 ORTHO05D006420 3.9e-141 505.4 383 66.8
Sp7g30130 Schrenkiella parvula HOM05D005048 ORTHO05D006420 5.1e-141 505.0 376 68.9
Carub.0007s0821 Capsella rubella HOM05D005048 ORTHO05D006420 1.1e-140 503.8 379 67.3
A10p08040 Brassica napus HOM05D005048 ORTHO05D006420 1.9e-140 503.1 380 67.4
Thhalv10013379m.g Eutrema salsugineum HOM05D005048 ORTHO05D006420 2.5e-140 502.7 383 67.6
SGA_v2.0_scaffold58G20419 Striga asiatica HOM05D005048 ORTHO05D006420 4.3e-140 501.9 380 68.7
Lsat_1_v5_gn_7_41421 Lactuca sativa HOM05D005048 ORTHO05D006420 7.3e-140 501.1 376 68.1
BraSC35t45995Z Brassica rapa HOM05D005048 ORTHO05D006420 1.1e-138 497.3 380 66.8
ATR0315G096 Amborella trichopoda HOM05D005048 ORTHO05D006420 3.1e-138 495.7 379 64.6
C09p39250 Brassica napus HOM05D005048 ORTHO05D006420 2.0e-137 493.0 378 65.6
BolC9t56804H Brassica oleracea HOM05D005048 ORTHO05D006420 2.0e-137 493.0 378 65.6
Os02g0277600 Oryza sativa ssp. japonica HOM05D005048 ORTHO05D006420 9.9e-137 490.7 373 64.9
MBI01_g38807_MAGBIO Magnolia biondii HOM05D005048 ORTHO05D006420 1.1e-135 487.3 355 69.6
unitig_0.g799 Utricularia gibba HOM05D005048 ORTHO05D006420 4.3e-132 475.3 382 63.9
Ah.14g082380 Amaranthus hybridus HOM05D005048 ORTHO05D006420 2.1e-131 473.0 377 65.5
MD15G1191600 Malus domestica HOM05D005048 ORTHO05D006420 2.0e-129 466.5 344 68.9
Nitab4.5_0004090g0040 Nicotiana tabacum HOM05D005048 ORTHO05D006420 8.4e-128 461.1 301 75.4
Nitab4.5_0000399g0090 Nicotiana tabacum HOM05D005048 ORTHO05D006420 1.8e-125 453.4 301 74.4
FAN26G2936 Fragaria x ananassa HOM05D005048 ORTHO05D006420 7.4e-124 448.0 316 71.8
BcaC04g20784 Brassica carinata HOM05D005048 ORTHO05D006420 1.9e-119 433.3 381 59.3
Dinv36669 Davidia involucrata HOM05D005048 ORTHO05D006420 3.5e-118 429.1 255 83.9
Mapoly0125s0046 Marchantia polymorpha HOM05D005048 ORTHO05D006420 5.3e-114 415.2 378 57.9
CARHR240280 Cardamine hirsuta HOM05D005048 ORTHO05D006420 2.9e-112 409.5 317 66.9
Pp3c9_14820 Physcomitrium patens HOM05D005048 ORTHO05D006420 3.2e-111 406.0 380 56.3
Zm00001eb203380 Zea mays HOM05D005048 ORTHO05D006420 4.3e-108 395.6 302 66.9
Zm00001eb203400 Zea mays HOM05D005048 ORTHO05D006420 9.7e-108 394.4 302 66.6
CBR_g50003 Chara braunii HOM05D005048 ORTHO05D006420 1.9e-103 380.2 377 52.8
Psat7g014800 Pisum sativum HOM05D005048 ORTHO05D006420 7.2e-103 378.3 254 74.4
Solyc01g102490.3 Solanum lycopersicum HOM05D005048 ORTHO05D006420 9.4e-103 377.9 256 72.7
SMO361G0652 Selaginella moellendorffii HOM05D005048 ORTHO05D006420 6.7e-101 371.7 375 52.8
AT4G32360 Arabidopsis thaliana HOM05D005048 ORTHO05D006420 2.0e-100 370.2 258 71.7
Sc08g0007680 Simmondsia chinensis HOM05D005048 ORTHO05D006420 5.0e-96 355.5 233 76.8
DCAR_009632 Daucus carota HOM05D005048 ORTHO05D006420 1.8e-93 347.1 230 75.2
Sed0003567 Sechium edule HOM05D005048 ORTHO05D006420 2.6e-92 343.2 231 74.0
MBI01_g29840_MAGBIO Magnolia biondii HOM05D005048 ORTHO05D006420 2.8e-91 339.7 364 55.2
Phvul.002G311600 Phaseolus vulgaris HOM05D005048 ORTHO05D006420 2.8e-91 339.7 230 73.9
Oeu035980.2 Olea europaea HOM05D005048 ORTHO05D006420 4.1e-90 335.9 404 51.0
Manes.14G158111 Manihot esculenta HOM05D005048 ORTHO05D006420 1.7e-88 330.5 230 74.8
Zm00001eb203390 Zea mays HOM05D005048 ORTHO05D006420 1.2e-78 297.7 230 67.8
CDE05G1289 Ceratophyllum demersum HOM05D005048 ORTHO05D006420 1.6e-78 297.4 256 57.0
SHI02718 Sapria himalayana HOM05D005048 ORTHO05D006420 4.0e-77 292.7 209 67.9
SEGI_35536 Sequoiadendron giganteum HOM05D005048 ORTHO05D006420 1.5e-76 290.8 249 63.1
MCO04G387 Micromonas commoda HOM05D005048 ORTHO05D006420 4.4e-76 289.3 395 43.0
Cre13.g562550 Chlamydomonas reinhardtii HOM05D005048 ORTHO05D006420 1.2e-73 281.2 400 41.8
AagrBONN_evm.TU.Sc2ySwM_344.4229 Anthoceros agrestis HOM05D005048 ORTHO05D006420 1.9e-71 273.9 241 62.2
FvH4_1g05561 Fragaria vesca HOM05D005048 ORTHO05D006420 4.7e-70 269.2 281 52.0
Dinv41630 Davidia involucrata HOM05D005048 ORTHO05D006420 9.2e-66 255.0 143 88.8
PRCOL_00004495 Prasinoderma coloniale HOM05D005048 ORTHO05D006420 4.9e-59 232.6 431 37.6
Haze_26375 Corylus avellana HOM05D005048 ORTHO05D006420 3.9e-56 223.0 390 38.2
Lj7C657T3 Lonicera japonica HOM05D005048 ORTHO05D006420 4.3e-55 219.5 123 87.0
Cfa027289 Carpinus fangiana HOM05D005048 ORTHO05D006420 2.1e-49 200.7 386 35.2
MBI01_g28841_MAGBIO Magnolia biondii HOM05D005048 ORTHO05D006420 1.3e-40 171.4 140 65.7
SGA_v2.0_scaffold29G12330 Striga asiatica HOM05D005048 ORTHO05D019217 1.9e-34 151.0 114 64.9
SHI02717 Sapria himalayana HOM05D005048 ORTHO05D012697 6.0e-33 146.0 153 50.3
Oeu035977.1 Olea europaea HOM05D005048 ORTHO05D006420 3.1e-29 133.7 145 53.1
CDE05G1414 Ceratophyllum demersum HOM05D005048 ORTHO05D006420 9.0e-29 132.1 296 32.4
AUR62010945 Chenopodium quinoa HOM05D005048 ORTHO05D006420 4.2e-26 123.2 378 26.5
SEGI_20206 Sequoiadendron giganteum HOM05D005048 ORTHO05D006420 4.8e-22 109.8 110 54.5
FAN26G3268 Fragaria x ananassa HOM05D005048 ORTHO05D006420 4.0e-21 106.7 61 77.0
CARHR240270 Cardamine hirsuta HOM05D005048 ORTHO05D006420 1.3e-19 101.7 61 73.8
AUR62007677 Chenopodium quinoa HOM05D000716 ORTHO05D008300 3.8e-19 100.1 57 75.4
FAN28G0458 Fragaria x ananassa HOM05D005048 ORTHO05D006420 1.4e-18 98.2 81 59.3
FvH4_1g05600 Fragaria vesca HOM05D005048 ORTHO05D006420 1.9e-18 97.8 148 45.9
Lj7C657T4 Lonicera japonica HOM05D005048 ORTHO05D006420 1.9e-18 97.8 77 66.2
FvH4_1g05551 Fragaria vesca HOM05D005048 ORTHO05D006420 1.6e-14 84.7 71 56.3
SGA_v2.0_scaffold7G04123 Striga asiatica HOM05D005048 ORTHO05D006420 1.6e-14 84.7 105 51.4
SEGI_37811 Sequoiadendron giganteum HOM05D005048 ORTHO05D012697 9.0e-13 79.0 76 50.0
SEGI_24932 Sequoiadendron giganteum HOM05D005048 ORTHO05D006420 1.0e-11 75.5 59 59.3
Rhsim02G0216900 Rhododendron simsii HOM05D005048 ORTHO05D006420 9.3e-10 68.9 51 60.8
Cpa.g.sc12.33 Carica papaya HOM05D005048 ORTHO05D006420 2.1e-09 67.8 67 44.8
BraA03t10937Z Brassica rapa HOM05D005048 ORTHO05D028090 1.8e-08 64.7 105 37.1
A03p16480 Brassica napus HOM05D005048 ORTHO05D028090 3.9e-08 63.5 107 36.4
C03p19370 Brassica napus HOM05D005048 ORTHO05D028090 3.3e-07 60.5 107 37.4
BolC3t14323H Brassica oleracea HOM05D005048 ORTHO05D028090 3.3e-07 60.5 107 37.4


User provided reference genes

Program Settings