Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 3.3e-53 211.5 107 100.0
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.6e-47 192.6 106 90.6
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.8e-43 179.1 105 86.7
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 1.1e-32 143.3 101 71.3
CSS0030909 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.4e-32 142.9 107 75.7
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 1.6e-31 139.4 106 67.9
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 7.8e-31 137.1 101 71.3
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 5.1e-30 134.4 100 69.0
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 1.5e-29 132.9 105 65.7
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 1.9e-29 132.5 103 68.0
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 3.3e-29 131.7 100 69.0
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 4.3e-29 131.3 100 68.0
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 2.8e-28 128.6 101 63.4
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 3.6e-28 128.3 102 60.8
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 3.6e-28 128.3 99 64.6
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 3.6e-28 128.3 101 62.4
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 8.1e-28 127.1 101 62.4
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 8.1e-28 127.1 101 62.4
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 1.1e-27 126.7 101 66.3
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 1.8e-27 125.9 101 62.4
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 1.8e-27 125.9 100 61.0
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 5.3e-27 124.4 103 61.2
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 9.0e-27 123.6 101 61.4
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 1.2e-26 123.2 102 60.8
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 1.2e-26 123.2 101 63.4
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 1.5e-26 122.9 101 60.4
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 1.5e-26 122.9 97 69.1
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 2.0e-26 122.5 100 63.0
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 3.4e-26 121.7 99 63.6
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 7.6e-26 120.6 99 61.6
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 7.6e-26 120.6 102 60.8
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 1.3e-25 119.8 99 60.6
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 1.7e-25 119.4 101 61.4
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 2.2e-25 119.0 100 61.0
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 2.2e-25 119.0 101 57.4
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 2.9e-25 118.6 102 58.8
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 2.9e-25 118.6 100 60.0
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 2.9e-25 118.6 103 58.3
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 4.9e-25 117.9 99 62.6
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 6.4e-25 117.5 101 56.4
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 8.4e-25 117.1 99 59.6
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.1e-24 116.7 96 62.5
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 1.1e-24 116.7 101 59.4
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 1.1e-24 116.7 101 56.4
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 1.4e-24 116.3 99 59.6
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 1.4e-24 116.3 102 60.8
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 1.9e-24 115.9 101 57.4
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 2.4e-24 115.5 101 60.4
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 3.2e-24 115.2 101 61.4
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 3.2e-24 115.2 104 60.6
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 5.4e-24 114.4 101 60.4
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 5.4e-24 114.4 99 57.6
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 5.4e-24 114.4 99 59.6
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 5.4e-24 114.4 101 58.4
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 7.1e-24 114.0 102 56.9
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 7.1e-24 114.0 105 61.0
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 9.3e-24 113.6 103 59.2
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 9.3e-24 113.6 102 55.9
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 1.2e-23 113.2 101 56.4
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 1.6e-23 112.8 102 57.8
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 1.6e-23 112.8 103 57.3
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 1.6e-23 112.8 105 58.1
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.1e-23 112.5 103 58.3
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 2.1e-23 112.5 102 55.9
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 2.1e-23 112.5 102 57.8
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 2.7e-23 112.1 97 61.9
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 3.5e-23 111.7 100 57.0
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 3.5e-23 111.7 102 55.9
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 4.6e-23 111.3 104 58.7
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 6.0e-23 110.9 102 54.9
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 6.0e-23 110.9 105 60.0
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 6.0e-23 110.9 102 54.9
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 6.0e-23 110.9 103 58.3
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 6.0e-23 110.9 105 57.1
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 7.9e-23 110.5 101 55.4
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 7.9e-23 110.5 105 52.4
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 7.9e-23 110.5 96 61.5
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 1.0e-22 110.2 101 54.5
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 1.0e-22 110.2 100 56.0
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 1.0e-22 110.2 106 55.7
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 1.3e-22 109.8 98 57.1
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 2.3e-22 109.0 102 52.9
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 2.3e-22 109.0 104 56.7
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 3.0e-22 108.6 106 55.7
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 3.0e-22 108.6 100 56.0
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 3.9e-22 108.2 101 53.5
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 3.9e-22 108.2 101 53.5
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 3.9e-22 108.2 102 56.9
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 3.9e-22 108.2 102 50.0
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 6.7e-22 107.5 99 55.6
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 6.7e-22 107.5 99 55.6
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 1.1e-21 106.7 99 55.6
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 1.1e-21 106.7 99 55.6
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 1.1e-21 106.7 97 58.8
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 2.5e-21 105.5 101 51.5
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 2.5e-21 105.5 102 51.0
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 3.3e-21 105.1 99 54.5
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 3.3e-21 105.1 101 50.5
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 4.3e-21 104.8 105 52.4
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 7.4e-21 104.0 103 52.4
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 7.4e-21 104.0 102 52.0
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 9.6e-21 103.6 106 53.8
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 9.6e-21 103.6 96 58.3
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 9.6e-21 103.6 106 50.9
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 9.6e-21 103.6 101 50.5
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 9.6e-21 103.6 104 51.0
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 1.3e-20 103.2 103 50.5
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 1.6e-20 102.8 102 49.0
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 3.7e-20 101.7 106 53.8
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 8.1e-20 100.5 102 53.9
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 1.1e-19 100.1 101 51.5
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 1.4e-19 99.8 98 51.0
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 1.8e-19 99.4 101 51.5
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 3.1e-19 98.6 95 54.7
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 3.1e-19 98.6 108 50.9
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 4.0e-19 98.2 118 49.2
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 9.0e-19 97.1 100 54.0
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 9.0e-19 97.1 106 52.8
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 1.5e-18 96.3 100 51.0
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 2.0e-18 95.9 94 51.1
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 5.8e-18 94.4 79 59.5
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 2.2e-17 92.4 96 50.0
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 1.1e-16 90.1 97 47.4
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 4.2e-16 88.2 97 46.4
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 9.3e-16 87.0 103 48.5
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 1.6e-15 86.3 70 60.0
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 4.6e-15 84.7 100 44.0
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 4.3e-13 78.2 99 45.5
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 4.3e-13 78.2 99 45.5
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 7.4e-13 77.4 64 59.4
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 3.7e-12 75.1 53 66.0
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 8.2e-12 73.9 77 50.6
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 3.1e-11 72.0 61 62.3
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 1.7e-09 66.2 97 43.3
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 2.2e-09 65.9 97 45.4
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 3.8e-09 65.1 95 40.0
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 4.9e-09 64.7 97 43.3


User provided reference genes

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