Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046356 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 1.9e-198 695.7 353 100.0
Lj1A1149G74 Lonicera japonica HOM05D004432 ORTHO05D005427 9.9e-131 470.7 414 65.9
MD05G1247000 Malus domestica HOM05D004432 ORTHO05D005427 1.9e-129 466.5 381 68.0
CSS0030674 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 1.2e-128 463.8 392 67.6
Thecc.02G004200 Theobroma cacao HOM05D004432 ORTHO05D005427 5.1e-127 458.4 391 65.5
MD10G1227600 Malus domestica HOM05D004432 ORTHO05D005427 4.3e-126 455.3 382 66.5
Actinidia33704 Actinidia chinensis HOM05D004432 ORTHO05D005427 1.2e-123 447.2 354 69.8
COL.COLO4_18029 Corchorus olitorius HOM05D004432 ORTHO05D003521 2.9e-122 442.6 390 66.2
Cc09_g05240 Coffea canephora HOM05D004432 ORTHO05D005427 8.4e-122 441.0 355 66.2
Duzib248G0466 Durio zibethinus HOM05D004432 ORTHO05D005427 1.1e-121 440.7 394 62.9
Atru.chr10.352 Acer truncatum HOM05D004432 ORTHO05D005427 1.4e-121 440.3 387 65.6
CiPaw.10G104800 Carya illinoinensis HOM05D004432 ORTHO05D005427 1.9e-121 439.9 371 66.8
Oeu056059.4 Olea europaea HOM05D004432 ORTHO05D005427 5.4e-121 438.3 412 62.6
Dinv31191 Davidia involucrata HOM05D004432 ORTHO05D005427 1.2e-120 437.2 400 63.5
PGSC0003DMG401017733 Solanum tuberosum HOM05D004432 ORTHO05D005427 1.2e-120 437.2 392 63.3
CsaV3_6G052770 Cucumis sativus L. HOM05D004432 ORTHO05D005427 3.5e-120 435.6 399 63.9
GSVIVG01012145001 Vitis vinifera HOM05D004432 ORTHO05D005427 7.8e-120 434.5 400 62.2
Hma1.2p1_0088F.1_g045180 Hydrangea macrophylla HOM05D004432 ORTHO05D005427 3.0e-119 432.6 395 63.8
ClCG01G025530 Citrullus lanatus HOM05D004432 ORTHO05D005427 1.1e-118 430.6 425 60.9
PSO541G2602 Papaver somniferum HOM05D004432 ORTHO05D005427 1.9e-118 429.9 405 63.0
Atru.chr8.662 Acer truncatum HOM05D004432 ORTHO05D005427 7.3e-118 427.9 346 68.5
Gohir.D12G047900 Gossypium hirsutum HOM05D004432 ORTHO05D005427 7.3e-118 427.9 386 63.5
Gohir.A12G049500 Gossypium hirsutum HOM05D004432 ORTHO05D005427 4.8e-117 425.2 386 63.5
TAR624G0396 Trochodendron aralioides HOM05D004432 ORTHO05D005427 1.4e-116 423.7 401 61.6
Ciclev10015448m.g Citrus clementina HOM05D004432 ORTHO05D005427 2.4e-116 422.9 356 66.3
RcHm_v2.0_Chr5g0021051 Rosa chinensis HOM05D004432 ORTHO05D005427 4.0e-116 422.2 398 63.8
Phvul.002G325100 Phaseolus vulgaris HOM05D004432 ORTHO05D005427 1.2e-115 420.6 396 61.6
Sed0004537 Sechium edule HOM05D004432 ORTHO05D005427 3.4e-115 419.1 400 62.0
SalBow8G1652 Salvia bowleyana HOM05D004432 ORTHO05D005427 9.9e-115 417.5 399 60.9
MELO3C007033.2 Cucumis melo HOM05D004432 ORTHO05D005427 1.7e-114 416.8 354 66.7
PSO675G3183 Papaver somniferum HOM05D004432 ORTHO05D005427 3.8e-114 415.6 359 65.5
ECA232G3357 Erigeron canadensis HOM05D004432 ORTHO05D005427 1.4e-113 413.7 385 62.1
Solyc02g081620.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 5.4e-113 411.8 392 61.0
PGR042G3514 Punica granatum HOM05D004432 ORTHO05D005427 1.8e-111 406.8 400 60.0
FvH4_3g12940 Fragaria vesca HOM05D004432 ORTHO05D005427 3.0e-111 406.0 398 61.3
FAN25G3492 Fragaria x ananassa HOM05D004432 ORTHO05D005427 3.0e-111 406.0 398 61.3
Nitab4.5_0006794g0040 Nicotiana tabacum HOM05D004432 ORTHO05D005427 3.9e-111 405.6 344 65.1
Nitab4.5_0010401g0010 Nicotiana tabacum HOM05D004432 ORTHO05D005427 5.1e-111 405.2 344 64.8
FAN16G2829 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.1e-110 404.1 398 61.1
Gorai.008G050900 Gossypium raimondii HOM05D004432 ORTHO05D005427 3.3e-110 402.5 340 65.6
FAN21G3105 Fragaria x ananassa HOM05D004432 ORTHO05D005427 7.4e-110 401.4 398 60.8
TWI63G0296 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 7.4e-110 401.4 397 57.7
CAN.G809.71 Capsicum annuum HOM05D004432 ORTHO05D005427 2.1e-109 399.8 393 60.6
Sabra03G0044900 Salix brachista HOM05D004432 ORTHO05D005427 2.1e-109 399.8 403 59.6
TPR.G12851 Trifolium pratense HOM05D004432 ORTHO05D005427 2.1e-109 399.8 401 60.1
GSVIVG01015880001 Vitis vinifera HOM05D004432 ORTHO05D005427 2.1e-109 399.8 398 59.0
CANSAT35G1493 Cannabis sativa HOM05D004432 ORTHO05D005427 2.4e-108 396.4 383 60.8
Duzib132G0752 Durio zibethinus HOM05D004432 ORTHO05D005427 4.0e-108 395.6 345 64.9
Peaxi162Scf00198g01525 Petunia axillaris HOM05D004432 ORTHO05D005427 9.0e-108 394.4 402 60.2
Sopen02g026240 Solanum pennellii HOM05D004432 ORTHO05D005427 1.5e-107 393.7 355 62.8
MBI18_g00544_MAGBIO Magnolia biondii HOM05D004432 ORTHO05D005427 3.4e-107 392.5 400 59.8
Manes.03G075400 Manihot esculenta HOM05D004432 ORTHO05D005427 3.4e-107 392.5 399 59.6
Actinidia22430 Actinidia chinensis HOM05D004432 ORTHO05D005427 7.6e-107 391.3 353 63.5
TWI34G0639 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 7.6e-107 391.3 398 57.5
Prupe.4G117400 Prunus persica HOM05D004432 ORTHO05D005427 9.9e-107 391.0 395 59.0
Dinv05655 Davidia involucrata HOM05D004432 ORTHO05D005427 1.3e-106 390.6 400 59.2
Peaxi162Scf00048g01413 Petunia axillaris HOM05D004432 ORTHO05D005427 1.7e-106 390.2 387 58.1
SGA_v2.0_scaffold175G39329 Striga asiatica HOM05D004432 ORTHO05D005427 1.7e-106 390.2 462 53.0
SGA_v2.0_scaffold298G47706 Striga asiatica HOM05D004432 ORTHO05D005427 4.9e-106 388.7 398 58.5
Aqoxy1G01396 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 8.4e-106 387.9 367 59.9
Oeu018409.2 Olea europaea HOM05D004432 ORTHO05D005427 1.9e-105 386.7 425 56.9
Glyma.08G049300 Glycine max HOM05D004432 ORTHO05D005427 3.2e-105 386.0 362 62.4
FAN11G2748 Fragaria x ananassa HOM05D004432 ORTHO05D005427 2.1e-104 383.3 352 63.4
TWI15G0381 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 4.6e-104 382.1 397 56.4
Potri.001G160700 Populus trichocarpa HOM05D004432 ORTHO05D005427 1.0e-103 380.9 349 63.6
unitig_748.g7489 Utricularia gibba HOM05D004432 ORTHO05D005427 1.3e-103 380.6 389 58.1
Nn7g38330 Nelumbo nucifera HOM05D004432 ORTHO05D005427 5.1e-103 378.6 390 57.4
Glyma.05G241800 Glycine max HOM05D004432 ORTHO05D005427 1.1e-102 377.5 399 57.4
HanXRQChr09g0257831 Helianthus annuus HOM05D004432 ORTHO05D005427 1.1e-102 377.5 390 59.2
DCAR_003760 Daucus carota HOM05D004432 ORTHO05D005427 1.3e-101 374.0 358 60.1
Eucgr.E04313 Eucalyptus grandis HOM05D004432 ORTHO05D005427 1.3e-101 374.0 389 58.6
Migut.M02008 Erythranthe guttata HOM05D004432 ORTHO05D005427 1.1e-100 370.9 399 57.1
Sopen02g010370 Solanum pennellii HOM05D004432 ORTHO05D005427 1.1e-100 370.9 393 56.5
Lalb_Chr05g0222011 Lupinus albus HOM05D004432 ORTHO05D005427 6.9e-100 368.2 401 56.6
Solyc02g032120.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 9.0e-100 367.9 393 56.2
Medtr8g106220 Medicago truncatula HOM05D004432 ORTHO05D005427 1.2e-99 367.5 363 58.4
Lsat_1_v5_gn_8_106840 Lactuca sativa HOM05D004432 ORTHO05D005427 5.8e-99 365.2 388 58.8
TWI15G1036 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.3e-98 364.0 389 56.8
AT1G30970 Arabidopsis thaliana HOM05D004432 ORTHO05D005427 3.8e-98 362.5 395 57.5
Carub.0001s2938 Capsella rubella HOM05D004432 ORTHO05D005427 4.9e-98 362.1 393 58.0
Cpa.g.sc30.114 Carica papaya HOM05D004432 ORTHO05D005427 6.5e-98 361.7 348 60.1
Psat7g005440 Pisum sativum HOM05D004432 ORTHO05D005427 6.5e-98 361.7 362 58.6
AL1G45380 Arabidopsis lyrata HOM05D004432 ORTHO05D005427 2.7e-96 356.3 348 61.2
MSTRG.16369 Avicennia marina HOM05D004432 ORTHO05D005427 6.0e-96 355.1 356 59.6
BcaB07g32757 Brassica carinata HOM05D004432 ORTHO05D005427 7.9e-96 354.8 387 57.1
Aa31LG6G12370 Aethionema arabicum HOM05D004432 ORTHO05D005427 1.0e-95 354.4 347 59.9
VMungo0251G3730 Vigna mungo HOM05D004432 ORTHO05D005427 3.0e-95 352.8 397 53.9
arahy.Tifrunner.gnm1.ann1.AGE02H Arachis hypogaea HOM05D004432 ORTHO05D005427 5.1e-95 352.1 355 60.6
arahy.Tifrunner.gnm1.ann1.GLQ3B3 Arachis hypogaea HOM05D004432 ORTHO05D005427 2.5e-94 349.7 355 60.3
Ca_17239_v3 Cicer arietinum L. HOM05D004432 ORTHO05D005427 9.6e-94 347.8 377 55.2
A08p10850 Brassica napus HOM05D004432 ORTHO05D005427 1.3e-93 347.4 333 61.0
BcaC07g37789 Brassica carinata HOM05D004432 ORTHO05D005427 2.8e-93 346.3 370 57.3
BcaB04g18194 Brassica carinata HOM05D004432 ORTHO05D005427 1.4e-92 344.0 379 55.7
HPP92_006155 Vanilla planifolia HOM05D004432 ORTHO05D005427 7.6e-91 338.2 325 60.0
HPP92_024334 Vanilla planifolia HOM05D004432 ORTHO05D005427 1.0e-90 337.8 332 61.1
AUR62017849 Chenopodium quinoa HOM05D004432 ORTHO05D005427 1.7e-90 337.0 412 54.4
THA.LOC104798567 Tarenaya hassleriana HOM05D004432 ORTHO05D005427 1.1e-89 334.3 353 56.4
Os09g0560900 Oryza sativa ssp. japonica HOM05D004432 ORTHO05D005427 2.5e-89 333.2 373 56.0
BolC5t31752H Brassica oleracea HOM05D004432 ORTHO05D005427 4.2e-89 332.4 384 56.5
BraA09t39051Z Brassica rapa HOM05D004432 ORTHO05D005427 7.2e-89 331.6 385 56.9
BcaC05g27130 Brassica carinata HOM05D004432 ORTHO05D005427 9.3e-89 331.3 384 56.8
C05p30150 Brassica napus HOM05D004432 ORTHO05D005427 9.3e-89 331.3 384 56.8
Lj4g0008002 Lotus japonicus HOM05D004432 ORTHO05D005427 1.2e-88 330.9 351 57.5
Sabra01G0131600 Salix brachista HOM05D004432 ORTHO05D005427 2.7e-88 329.7 408 51.7
BolC8t48181H Brassica oleracea HOM05D004432 ORTHO05D005427 3.6e-88 329.3 332 59.3
EL10Ac6g15345 Beta vulgaris HOM05D004432 ORTHO05D005427 3.0e-87 326.2 401 52.9
Sp1g26830 Schrenkiella parvula HOM05D004432 ORTHO05D005427 1.1e-86 324.3 347 56.2
Lalb_Chr09g0330711 Lupinus albus HOM05D004432 ORTHO05D005427 7.4e-86 321.6 373 53.6
Thhalv10008022m.g Eutrema salsugineum HOM05D004432 ORTHO05D005427 1.1e-84 317.8 390 52.6
Sc16g0004480 Simmondsia chinensis HOM05D004432 ORTHO05D005427 1.1e-84 317.8 383 53.0
AUR62003535 Chenopodium quinoa HOM05D004432 ORTHO05D005427 1.8e-84 317.0 359 56.0
BraA08t33081Z Brassica rapa HOM05D004432 ORTHO05D005427 1.5e-83 313.9 332 58.4
A09p35240 Brassica napus HOM05D004432 ORTHO05D005427 1.0e-82 311.2 339 58.1
Cfa001128 Carpinus fangiana HOM05D004432 ORTHO05D005427 2.9e-82 309.7 326 59.2
ATR0568G227 Amborella trichopoda HOM05D004432 ORTHO05D005427 1.1e-81 307.8 418 49.3
Lalb_Chr10g0095541 Lupinus albus HOM05D004432 ORTHO05D005427 3.2e-81 306.2 398 49.7
QL11p012272 Quercus lobata HOM05D004432 ORTHO05D005427 6.1e-80 302.0 276 64.5
vmacro03556 Vaccinium macrocarpon HOM05D004432 ORTHO05D005427 5.1e-79 298.9 496 43.3
Hund04373 Selenicereus undatus HOM05D004432 ORTHO05D005427 1.5e-78 297.4 500 44.2
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 3.3e-78 296.2 343 54.8
Ah.03g147620 Amaranthus hybridus HOM05D004432 ORTHO05D005427 1.4e-76 290.8 343 55.4
SEGI_00495 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 1.4e-73 280.8 423 47.8
Mapoly0070s0095 Marchantia polymorpha HOM05D004432 ORTHO05D005427 5.5e-73 278.9 421 44.9
AagrBONN_evm.TU.Sc2ySwM_344.4234 Anthoceros agrestis HOM05D004432 ORTHO05D005427 7.9e-72 275.0 421 46.1
Potri.003G074200 Populus trichocarpa HOM05D004432 ORTHO05D005427 5.7e-70 268.9 257 63.4
TAR629G1033 Trochodendron aralioides HOM05D004432 ORTHO05D005427 2.4e-68 263.5 258 60.9
TWI32G0924 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 4.1e-68 262.7 333 50.2
Pp3c22_1400 Physcomitrium patens HOM05D004432 ORTHO05D005427 4.7e-64 249.2 427 41.9
SMO239G0124 Selaginella moellendorffii HOM05D004432 ORTHO05D005427 7.5e-62 241.9 357 47.1
CiPaw.09G137500 Carya illinoinensis HOM05D004432 ORTHO05D005427 1.1e-60 238.0 168 73.8
Rhsim13G0133800 Rhododendron simsii HOM05D004432 ORTHO05D005427 1.8e-60 237.3 308 51.0
RhsimUnG0176800 Rhododendron simsii HOM05D004432 ORTHO05D005427 1.8e-60 237.3 308 51.0
Haze_05275 Corylus avellana HOM05D004432 ORTHO05D005427 3.2e-57 226.5 275 54.5
Zm00001eb104750 Zea mays HOM05D004432 ORTHO05D005427 5.2e-55 219.2 286 51.4
Dinv23013 Davidia involucrata HOM05D004432 ORTHO05D005427 1.3e-53 214.5 270 51.9
Haze_05262 Corylus avellana HOM05D004432 ORTHO05D005427 2.3e-50 203.8 98 94.9
Rhsim13G0133700 Rhododendron simsii HOM05D004432 ORTHO05D005427 6.5e-50 202.2 103 92.2
RhsimUnG0176700 Rhododendron simsii HOM05D004432 ORTHO05D005427 6.5e-50 202.2 103 92.2
CiPaw.09G137600 Carya illinoinensis HOM05D004432 ORTHO05D005427 1.5e-49 201.1 209 60.3
SEGI_03989 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 2.0e-46 190.7 291 45.7
Dinv23014 Davidia involucrata HOM05D004432 ORTHO05D005427 1.9e-41 174.1 93 88.2
CBR_g1074 Chara braunii HOM05D004432 ORTHO05D005427 6.8e-39 165.6 309 41.1
SHI20754 Sapria himalayana HOM05D000030 ORTHO05D000009 4.4e-38 162.9 682 27.6
CARHR030510 Cardamine hirsuta HOM05D004432 ORTHO05D005427 4.3e-33 146.4 207 51.2
Nitab4.5_0004903g0050 Nicotiana tabacum HOM05D004432 ORTHO05D005427 9.5e-33 145.2 197 47.2
Atru.chr10.360 Acer truncatum HOM05D004432 ORTHO05D005427 8.9e-31 138.7 186 51.6
SEGI_09071 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 8.3e-29 132.1 111 66.7
Sopen12g027920 Solanum pennellii HOM05D004432 ORTHO05D005427 2.0e-27 127.5 71 77.5
Aqoxy1G01395 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 6.0e-27 125.9 320 35.0
Cfa025961 Carpinus fangiana HOM05D004432 ORTHO05D005427 6.6e-26 122.5 119 47.9
Cre06.g305200 Chlamydomonas reinhardtii HOM05D004432 ORTHO05D005427 2.8e-24 117.1 100 54.0
Dinv01000 Davidia involucrata HOM05D004432 ORTHO05D005427 4.7e-24 116.3 159 50.9
MCO08G042 Micromonas commoda HOM05D004432 ORTHO05D005427 1.7e-21 107.8 304 33.9
GSVIVG01015874001 Vitis vinifera HOM05D004432 ORTHO05D005427 2.9e-21 107.1 65 75.4
Pp3c19_17160 Physcomitrium patens HOM05D004432 ORTHO05D005427 1.4e-20 104.8 168 45.2
CAN.G958.2 Capsicum annuum HOM05D004432 ORTHO05D005427 3.8e-13 80.1 73 58.9
Psat7g229080 Pisum sativum HOM05D004432 ORTHO05D005427 1.6e-08 64.7 74 50.0
AUR62036780 Chenopodium quinoa HOM05D056044 ORTHO05D137976 1.2e-06 58.5 61 49.2
Lj1g0003853 Lotus japonicus HOM05D004432 ORTHO05D005427 1.2e-06 58.5 58 58.6


User provided reference genes

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