Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 7.4e-130 467.6 313 100.0
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 1.7e-70 270.4 292 63.4
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 1.5e-69 267.3 293 64.5
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 4.7e-68 262.3 331 63.4
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.5e-66 257.3 326 56.7
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 4.9e-65 252.3 328 53.7
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 5.4e-64 248.8 332 50.9
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 7.1e-64 248.4 325 60.9
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 6.0e-63 245.4 339 51.3
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 1.0e-62 244.6 334 52.4
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 3.9e-62 242.7 330 53.3
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 1.1e-61 241.1 347 47.6
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 1.1e-61 241.1 333 54.7
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 3.3e-61 239.6 324 61.4
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 3.3e-61 239.6 324 61.1
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 7.3e-61 238.4 313 57.5
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 7.3e-61 238.4 324 61.1
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.2e-60 237.7 340 49.7
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 1.4e-59 234.2 336 55.7
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 2.4e-59 233.4 340 46.5
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 2.4e-59 233.4 324 57.7
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 4.0e-59 232.6 318 50.9
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 5.2e-59 232.3 313 47.3
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 6.8e-59 231.9 325 56.3
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 6.8e-59 231.9 339 53.1
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 6.8e-59 231.9 318 56.0
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 8.9e-59 231.5 326 50.3
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 1.7e-57 227.3 311 51.1
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 2.2e-57 226.9 310 56.5
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 2.2e-57 226.9 323 51.4
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 8.4e-57 224.9 320 49.7
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 1.1e-56 224.6 316 48.4
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 3.2e-56 223.0 348 53.4
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 4.2e-56 222.6 297 56.9
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 9.2e-56 221.5 326 53.4
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 1.2e-55 221.1 328 51.5
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 3.5e-55 219.5 330 53.6
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.7e-54 217.2 319 47.0
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 3.3e-53 213.0 331 49.5
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 5.6e-53 212.2 292 52.7
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 9.6e-53 211.5 319 50.8
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.6e-52 210.7 319 48.3
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 2.1e-52 210.3 365 53.4
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 8.1e-52 208.4 327 52.9
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 1.4e-51 207.6 315 47.9
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 1.4e-51 207.6 331 54.7
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 3.1e-51 206.5 323 52.6
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 4.0e-51 206.1 322 54.0
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 6.9e-51 205.3 316 45.9
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 9.0e-51 204.9 318 55.0
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 9.0e-51 204.9 300 52.0
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 2.0e-50 203.8 340 52.1
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 2.6e-50 203.4 328 50.0
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 2.6e-50 203.4 318 43.1
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 9.9e-50 201.4 337 49.9
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 1.3e-49 201.1 337 49.9
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.7e-49 200.7 328 50.3
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 2.9e-49 199.9 336 49.4
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 4.9e-49 199.1 294 53.1
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 4.9e-49 199.1 317 42.6
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 8.4e-49 198.4 282 58.2
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.4e-48 197.6 326 50.9
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 1.9e-48 197.2 331 49.8
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 1.9e-48 197.2 318 42.8
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 2.4e-48 196.8 315 47.3
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 2.4e-48 196.8 320 59.4
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 1.2e-47 194.5 328 51.2
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 1.2e-47 194.5 328 49.1
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 1.2e-47 194.5 280 54.6
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 2.1e-47 193.7 324 51.2
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 2.7e-47 193.4 319 54.2
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 3.5e-47 193.0 196 56.6
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 7.8e-47 191.8 320 53.8
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 1.0e-46 191.4 326 45.4
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 1.0e-46 191.4 326 45.4
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 1.7e-46 190.7 342 51.5
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 2.3e-46 190.3 321 54.2
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 5.1e-46 189.1 307 49.8
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 5.1e-46 189.1 345 46.4
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 8.7e-46 188.3 326 50.6
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 8.7e-46 188.3 313 46.0
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 1.1e-45 188.0 321 47.4
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 1.9e-45 187.2 330 49.4
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 2.5e-45 186.8 341 46.3
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 7.3e-45 185.3 324 48.8
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 9.6e-45 184.9 324 47.5
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 9.6e-45 184.9 320 50.0
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 1.3e-44 184.5 329 48.3
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 1.6e-44 184.1 323 46.1
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 1.6e-44 184.1 312 43.9
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 1.6e-44 184.1 323 46.1
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 1.6e-44 184.1 323 46.1
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 3.6e-44 183.0 337 46.9
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 4.8e-44 182.6 324 47.2
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 4.8e-44 182.6 340 49.1
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 6.2e-44 182.2 271 50.2
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 6.2e-44 182.2 343 45.2
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 1.1e-43 181.4 312 45.8
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 1.1e-43 181.4 311 43.1
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 2.4e-43 180.3 275 52.4
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 4.0e-43 179.5 378 46.8
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 4.0e-43 179.5 336 46.4
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 5.3e-43 179.1 343 46.9
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 6.9e-43 178.7 261 47.9
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 1.2e-42 177.9 319 44.5
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 2.0e-42 177.2 323 49.5
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 2.6e-42 176.8 313 45.4
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 5.8e-42 175.6 313 40.3
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 1.1e-40 171.4 387 46.3
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 1.4e-40 171.0 310 38.7
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 5.4e-40 169.1 267 46.8
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 5.4e-40 169.1 338 42.3
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.2e-39 167.9 342 46.5
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.1e-39 167.2 338 50.3
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 8.7e-38 161.8 314 50.0
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 3.1e-35 153.3 261 42.1
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 5.3e-35 152.5 265 43.4
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 9.0e-35 151.8 312 49.0
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 2.6e-34 150.2 336 46.1
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 5.8e-34 149.1 180 52.8
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 5.8e-34 149.1 220 53.2
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 1.0e-33 148.3 262 46.9
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 1.7e-33 147.5 325 45.8
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 2.5e-32 143.7 315 39.0
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 3.2e-32 143.3 343 44.3
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 5.5e-32 142.5 159 54.1
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 1.2e-31 141.4 201 45.8
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 2.1e-31 140.6 292 38.7
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 4.6e-31 139.4 330 43.0
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 6.0e-31 139.0 278 43.5
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 7.9e-31 138.7 332 38.9
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.0e-30 138.3 322 43.8
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 1.3e-30 137.9 339 36.6
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.3e-30 137.9 227 52.4
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 1.9e-29 134.0 254 49.6
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 9.6e-29 131.7 370 37.0
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 9.6e-29 131.7 327 38.8
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 3.7e-28 129.8 322 42.5
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 1.1e-27 128.3 175 48.0
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.5e-26 124.4 280 46.1
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 1.5e-26 124.4 295 35.6
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 3.4e-26 123.2 151 58.9
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 3.8e-25 119.8 266 46.2
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 6.5e-25 119.0 318 35.5
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 1.2e-23 114.8 285 36.1
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 2.5e-21 107.1 176 42.0
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 2.5e-21 107.1 193 42.5
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.4e-19 101.3 125 50.4
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 5.0e-17 92.8 194 44.3
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 1.9e-16 90.9 341 29.9
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 1.4e-14 84.7 173 39.9
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 5.7e-13 79.3 178 36.5
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 1.3e-12 78.2 338 30.5
unitig_748.g7579 Utricularia gibba HOM05D004496 ORTHO05D005513 1.2e-10 71.6 80 53.8
Nn2g15668 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.0e-10 70.9 92 45.7
Os11g0497350 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 6.5e-09 65.9 214 37.9


User provided reference genes

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