Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046344 Camellia sinensis var. sinensis HOM05D000412 ORTHO05D000429 1.1e-130 469.9 237 100.0
CSS0050379 Camellia sinensis var. sinensis HOM05D000412 ORTHO05D000429 1.1e-130 469.9 237 100.0
Rhsim02G0000800 Rhododendron simsii HOM05D000412 ORTHO05D000429 2.2e-97 359.4 233 80.7
Dinv15619 Davidia involucrata HOM05D000412 ORTHO05D000429 4.8e-97 358.2 235 77.9
Dinv29540 Davidia involucrata HOM05D000412 ORTHO05D000429 1.4e-96 356.7 235 77.4
CSS0032476 Camellia sinensis var. sinensis HOM05D000412 ORTHO05D000429 5.3e-96 354.8 235 79.6
vmacro15160 Vaccinium macrocarpon HOM05D000412 ORTHO05D000429 2.1e-92 342.8 233 77.3
Actinidia18493 Actinidia chinensis HOM05D000412 ORTHO05D000429 2.7e-84 315.8 246 67.5
Hma1.2p1_0013F.1_g008020 Hydrangea macrophylla HOM05D000412 ORTHO05D000429 1.4e-80 303.5 235 63.4
Rhsim04G0245600 Rhododendron simsii HOM05D000412 ORTHO05D000429 1.8e-80 303.1 234 67.5
Rhsim04G0246100 Rhododendron simsii HOM05D000412 ORTHO05D000429 1.8e-80 303.1 234 67.5
GSVIVG01017649001 Vitis vinifera HOM05D000412 ORTHO05D000429 1.5e-79 300.1 235 66.8
Lj6C698G16 Lonicera japonica HOM05D000412 ORTHO05D000429 6.7e-75 284.6 214 70.1
DCAR_026959 Daucus carota HOM05D000412 ORTHO05D000429 1.8e-72 276.6 236 61.0
TAR636G1100 Trochodendron aralioides HOM05D000412 ORTHO05D000429 2.0e-71 273.1 248 58.5
Cc03_g00370 Coffea canephora HOM05D000412 ORTHO05D000429 1.3e-70 270.4 235 59.6
vmacro07990 Vaccinium macrocarpon HOM05D000412 ORTHO05D000429 2.1e-68 263.1 235 61.7
QL06p013654 Quercus lobata HOM05D000412 ORTHO05D000429 1.2e-66 257.3 235 57.4
TAR365G0151 Trochodendron aralioides HOM05D000412 ORTHO05D000429 1.5e-66 256.9 248 57.3
TAR362G1156 Trochodendron aralioides HOM05D000412 ORTHO05D000429 2.0e-66 256.5 240 55.8
Potri.010G152300 Populus trichocarpa HOM05D000412 ORTHO05D000429 2.6e-66 256.1 235 57.0
arahy.Tifrunner.gnm1.ann1.7B7L4H Arachis hypogaea HOM05D000412 ORTHO05D000429 4.8e-65 251.9 235 57.0
arahy.Tifrunner.gnm1.ann1.K8ASES Arachis hypogaea HOM05D000412 ORTHO05D000429 4.8e-65 251.9 235 57.0
Cfa015707 Carpinus fangiana HOM05D000412 ORTHO05D000429 4.8e-65 251.9 235 57.4
MBI18_g09657_MAGBIO Magnolia biondii HOM05D000412 ORTHO05D000429 2.4e-64 249.6 244 54.9
CiPaw.01G132100 Carya illinoinensis HOM05D000412 ORTHO05D000429 4.1e-64 248.8 235 57.4
Haze_00808 Corylus avellana HOM05D000412 ORTHO05D000429 4.1e-64 248.8 235 56.6
Sabra10G0117200 Salix brachista HOM05D001482 ORTHO05D000429 9.1e-64 247.7 230 56.1
Oeu012203.1 Olea europaea HOM05D000412 ORTHO05D000429 5.9e-63 245.0 235 55.7
Atru.chr4.3118 Acer truncatum HOM05D000412 ORTHO05D000429 7.7e-63 244.6 239 58.6
Prupe.1G109700 Prunus persica HOM05D000412 ORTHO05D000429 1.3e-62 243.8 235 57.4
Cpa.g.sc146.48 Carica papaya HOM05D000412 ORTHO05D000429 6.5e-62 241.5 236 56.4
ECA246G1000 Erigeron canadensis HOM05D000412 ORTHO05D000429 1.5e-61 240.4 216 56.9
DCAR_023380 Daucus carota HOM05D000412 ORTHO05D000429 2.5e-61 239.6 239 51.0
Nitab4.5_0000186g0010 Nicotiana tabacum HOM05D000412 ORTHO05D000429 9.4e-61 237.7 234 55.6
Nn4g25445 Nelumbo nucifera HOM05D000412 ORTHO05D000429 1.6e-60 236.9 241 51.9
Glyma.17G038400 Glycine max HOM05D000412 ORTHO05D000429 3.6e-60 235.7 236 53.8
HanXRQChr05g0145831 Helianthus annuus HOM05D000412 ORTHO05D000429 6.1e-60 235.0 216 57.4
Lj3C838G11 Lonicera japonica HOM05D000412 ORTHO05D000429 6.1e-60 235.0 216 57.9
VMungo1215G2106 Vigna mungo HOM05D000412 ORTHO05D000429 4.0e-59 232.3 235 53.2
CANSAT78G0952 Cannabis sativa HOM05D000412 ORTHO05D000429 5.2e-59 231.9 233 54.9
Oeu014217.2 Olea europaea HOM05D000412 ORTHO05D000429 5.2e-59 231.9 230 56.5
TWI53G0549 Tripterygium wilfordii HOM05D000412 ORTHO05D000429 8.8e-59 231.1 238 54.2
Glyma.07G233400 Glycine max HOM05D000412 ORTHO05D000429 1.5e-58 230.3 237 53.6
Sabra08G0075800 Salix brachista HOM05D000412 ORTHO05D000429 1.5e-58 230.3 235 52.8
FAN07G2893 Fragaria x ananassa HOM05D000412 ORTHO05D000429 2.0e-58 229.9 228 55.7
Nitab4.5_0000895g0110 Nicotiana tabacum HOM05D000412 ORTHO05D000429 2.0e-58 229.9 234 56.8
Nitab4.5_0002474g0020 Nicotiana tabacum HOM05D000412 ORTHO05D000429 2.0e-58 229.9 236 52.1
Phvul.003G119300 Phaseolus vulgaris HOM05D000412 ORTHO05D000429 2.6e-58 229.6 235 52.8
FAN17G2442 Fragaria x ananassa HOM05D000412 ORTHO05D000429 3.4e-58 229.2 228 53.5
TWI09G1009 Tripterygium wilfordii HOM05D000412 ORTHO05D000429 7.5e-58 228.0 238 53.8
Migut.O00389 Erythranthe guttata HOM05D000412 ORTHO05D000429 1.7e-57 226.9 233 54.9
Peaxi162Scf00126g01316 Petunia axillaris HOM05D000412 ORTHO05D000429 1.7e-57 226.9 232 53.0
PGR004G2647 Punica granatum HOM05D000412 ORTHO05D000429 2.8e-57 226.1 229 53.7
RcHm_v2.0_Chr4g0426561 Rosa chinensis HOM05D000412 ORTHO05D000429 3.7e-57 225.7 228 52.6
Migut.G00015 Erythranthe guttata HOM05D000412 ORTHO05D000429 1.1e-56 224.2 233 54.1
Ciclev10004458m.g Citrus clementina HOM05D000412 ORTHO05D000429 1.4e-56 223.8 239 56.9
Potri.008G100200 Populus trichocarpa HOM05D000412 ORTHO05D000429 1.4e-56 223.8 215 56.3
MSTRG.10179 Avicennia marina HOM05D000412 ORTHO05D000429 1.8e-56 223.4 239 54.0
Medtr4g123630 Medicago truncatula HOM05D000412 ORTHO05D000429 5.4e-56 221.9 214 55.1
FvH4_4g21030 Fragaria vesca HOM05D000412 ORTHO05D000429 1.2e-55 220.7 224 52.7
FAN12G1214 Fragaria x ananassa HOM05D000412 ORTHO05D000429 1.2e-55 220.7 224 52.7
MD16G1140100 Malus domestica HOM05D000412 ORTHO05D000429 1.6e-55 220.3 222 55.9
Nitab4.5_0005769g0050 Nicotiana tabacum HOM05D000412 ORTHO05D000429 1.6e-55 220.3 225 55.6
Aqoxy2G02616 Aquilegia oxysepala HOM05D000412 ORTHO05D000429 3.5e-55 219.2 246 54.1
Ca_21389_v3 Cicer arietinum L. HOM05D000412 ORTHO05D000429 3.5e-55 219.2 215 54.4
Lalb_Chr15g0089011 Lupinus albus HOM05D000412 ORTHO05D000429 4.5e-55 218.8 235 53.6
Thecc.04G309200 Theobroma cacao HOM05D000412 ORTHO05D000429 7.7e-55 218.0 215 57.7
MD13G1146000 Malus domestica HOM05D000412 ORTHO05D000429 1.7e-54 216.9 235 53.6
EL10Ac3g06284 Beta vulgaris HOM05D000412 ORTHO05D000429 2.3e-54 216.5 213 49.8
Gohir.A02G086600 Gossypium hirsutum HOM05D000412 ORTHO05D000429 2.3e-54 216.5 215 58.6
Phvul.006G121600 Phaseolus vulgaris HOM05D000412 ORTHO05D000429 3.8e-54 215.7 235 52.3
Sed0007121 Sechium edule HOM05D000412 ORTHO05D000429 5.0e-54 215.3 216 53.2
TPR.G12538 Trifolium pratense HOM05D000412 ORTHO05D000429 5.0e-54 215.3 216 56.5
Peaxi162Scf01194g00132 Petunia axillaris HOM05D000412 ORTHO05D000429 8.6e-54 214.5 233 51.9
VMungo0540G2499 Vigna mungo HOM05D000412 ORTHO05D000429 1.1e-53 214.2 235 51.1
PGSC0003DMG400004607 Solanum tuberosum HOM05D000412 ORTHO05D000429 1.5e-53 213.8 234 53.0
Gohir.D02G062600 Gossypium hirsutum HOM05D000412 ORTHO05D000429 3.3e-53 212.6 215 58.1
Gorai.005G070500 Gossypium raimondii HOM05D000412 ORTHO05D000429 3.3e-53 212.6 215 58.1
Eucgr.H04096 Eucalyptus grandis HOM05D000412 ORTHO05D000429 5.5e-53 211.8 238 50.0
Hund12241 Selenicereus undatus HOM05D000412 ORTHO05D000429 4.7e-52 208.8 213 50.2
Ca_00938_v3 Cicer arietinum L. HOM05D000412 ORTHO05D000429 8.0e-52 208.0 235 52.8
Psat0ss1196g0680 Pisum sativum HOM05D000412 ORTHO05D000429 1.0e-51 207.6 216 54.2
COL.COLO4_34536 Corchorus olitorius HOM05D000412 ORTHO05D000429 1.4e-51 207.2 215 55.3
ClCG06G004290 Citrullus lanatus HOM05D000412 ORTHO05D000429 4.0e-51 205.7 215 49.3
Lalb_Chr18g0058421 Lupinus albus HOM05D000412 ORTHO05D000429 4.0e-51 205.7 235 50.2
MELO3C021242.2 Cucumis melo HOM05D000412 ORTHO05D000429 6.8e-51 204.9 215 49.3
Lj6g0002580 Lotus japonicus HOM05D000412 ORTHO05D000429 8.9e-51 204.5 235 50.6
Oeu038966.1 Olea europaea HOM05D000412 ORTHO05D000429 1.2e-50 204.1 215 51.2
Glyma.15G136400 Glycine max HOM05D000412 ORTHO05D000429 5.7e-50 201.8 235 50.2
Lj4g0003655 Lotus japonicus HOM05D000412 ORTHO05D000429 5.7e-50 201.8 211 54.0
CsaV3_6G000120 Cucumis sativus L. HOM05D000412 ORTHO05D000429 7.5e-50 201.4 215 48.4
Gohir.A01G036000 Gossypium hirsutum HOM05D000412 ORTHO05D000429 9.8e-50 201.1 217 53.9
AUR62002582 Chenopodium quinoa HOM05D000412 ORTHO05D000429 1.3e-49 200.7 235 47.2
Lalb_Chr20g0120311 Lupinus albus HOM05D000412 ORTHO05D000429 4.9e-49 198.7 235 50.6
Gohir.D01G023589 Gossypium hirsutum HOM05D000412 ORTHO05D000429 1.4e-48 197.2 217 53.0
Lsat_1_v5_gn_6_117180 Lactuca sativa HOM05D000412 ORTHO05D000429 1.8e-48 196.8 196 57.7
CAN.G484.80 Capsicum annuum HOM05D000412 ORTHO05D000429 3.2e-48 196.1 214 54.2
Solyc12g099090.3 Solanum lycopersicum HOM05D000412 ORTHO05D000429 5.4e-48 195.3 214 52.8
Sopen12g033800 Solanum pennellii HOM05D000412 ORTHO05D000429 5.4e-48 195.3 214 52.8
Sc19g0002200 Simmondsia chinensis HOM05D000412 ORTHO05D000429 4.5e-47 192.2 200 50.0
Gorai.002G031800 Gossypium raimondii HOM05D000412 ORTHO05D000429 1.3e-46 190.7 217 51.6
TPR.G30810 Trifolium pratense HOM05D000412 ORTHO05D000429 2.3e-46 189.9 235 49.4
SalBow8G1211 Salvia bowleyana HOM05D000412 ORTHO05D000429 5.0e-46 188.7 230 43.9
AUR62030004 Chenopodium quinoa HOM05D000412 ORTHO05D000429 6.6e-46 188.3 235 44.7
THA.LOC104802611 Tarenaya hassleriana HOM05D000412 ORTHO05D000429 6.6e-46 188.3 206 50.0
arahy.Tifrunner.gnm1.ann1.CFVF1U Arachis hypogaea HOM05D000412 ORTHO05D000429 8.6e-46 188.0 217 53.0
Sed0012157 Sechium edule HOM05D000412 ORTHO05D000429 8.6e-46 188.0 215 46.5
CiPaw.02G071400 Carya illinoinensis HOM05D000412 ORTHO05D000429 3.3e-45 186.0 230 49.1
arahy.Tifrunner.gnm1.ann1.18BCEG Arachis hypogaea HOM05D000412 ORTHO05D000429 4.3e-45 185.7 217 52.5
CARHR037750 Cardamine hirsuta HOM05D000412 ORTHO05D000429 4.3e-45 185.7 199 46.7
Psat1g163000 Pisum sativum HOM05D000412 ORTHO05D000429 1.2e-44 184.1 235 48.5
Medtr2g032660 Medicago truncatula HOM05D000412 ORTHO05D000429 4.7e-44 182.2 236 50.0
Thhalv10011308m.g Eutrema salsugineum HOM05D000412 ORTHO05D000429 1.0e-43 181.0 189 48.1
Sp1g35070 Schrenkiella parvula HOM05D000412 ORTHO05D000429 1.4e-43 180.6 190 48.9
AT1G48110 Arabidopsis thaliana HOM05D000412 ORTHO05D000429 4.0e-43 179.1 211 43.1
Aa31LG8G4240 Aethionema arabicum HOM05D000412 ORTHO05D000429 5.2e-43 178.7 194 50.0
AL1G54680 Arabidopsis lyrata HOM05D000412 ORTHO05D000429 7.5e-42 174.9 189 45.0
Glyma.09G031200 Glycine max HOM05D000412 ORTHO05D000429 3.7e-41 172.6 217 47.5
Carub.0001s3721 Capsella rubella HOM05D000412 ORTHO05D000429 1.6e-39 167.2 212 44.8
SGA_v2.0_scaffold64G22050 Striga asiatica HOM05D000412 ORTHO05D000429 4.6e-39 165.6 215 43.7
CDE11G1101 Ceratophyllum demersum HOM05D000412 ORTHO05D000429 7.3e-37 158.3 226 44.2
Manes.15G003300 Manihot esculenta HOM05D000412 ORTHO05D000429 1.6e-36 157.1 168 53.0
AL3G30380 Arabidopsis lyrata HOM05D000412 ORTHO05D000429 5.8e-34 148.7 188 44.1
CARHR092640 Cardamine hirsuta HOM05D000412 ORTHO05D000429 7.5e-34 148.3 215 41.4
Carub.0003s1704 Capsella rubella HOM05D000412 ORTHO05D000429 4.9e-33 145.6 200 43.0
PSO210G0141 Papaver somniferum HOM05D000412 ORTHO05D000429 4.9e-33 145.6 253 37.5
C06p02520 Brassica napus HOM05D000412 ORTHO05D000429 2.4e-32 143.3 209 39.7
Manes.03G210301 Manihot esculenta HOM05D000412 ORTHO05D048705 5.4e-32 142.1 104 63.5
SHI00067 Sapria himalayana HOM05D000412 ORTHO05D000429 3.5e-31 139.4 143 47.6
ATR1091G091 Amborella trichopoda HOM05D000412 ORTHO05D000429 3.9e-30 136.0 183 41.0
PSO761G0080 Papaver somniferum HOM05D000412 ORTHO05D000429 7.3e-29 131.7 232 37.5
AT3G17330 Arabidopsis thaliana HOM05D000412 ORTHO05D000429 1.9e-24 117.1 150 47.3
BraA06t23672Z Brassica rapa HOM05D000412 ORTHO05D000429 5.4e-24 115.5 208 37.5
A06p04690 Brassica napus HOM05D000412 ORTHO05D000429 2.1e-23 113.6 208 34.6
BolC6t35380H Brassica oleracea HOM05D000412 ORTHO05D000429 3.0e-22 109.8 207 32.4
Os03g0317000 Oryza sativa ssp. japonica HOM05D000412 ORTHO05D000429 6.6e-22 108.6 192 39.1
SEGI_19777 Sequoiadendron giganteum HOM05D000412 ORTHO05D000429 2.1e-20 103.6 175 36.6
HPP92_017025 Vanilla planifolia HOM05D000412 ORTHO05D000429 2.1e-20 103.6 212 34.9
unitig_88.g27789 Utricularia gibba HOM05D000412 ORTHO05D007403 3.1e-19 99.8 133 42.9
SEGI_07543 Sequoiadendron giganteum HOM05D000412 ORTHO05D000429 6.8e-19 98.6 151 39.1
TAR624G0667 Trochodendron aralioides HOM05D000412 ORTHO05D000429 3.4e-18 96.3 166 33.7
MBI07_g10926_MAGBIO Magnolia biondii HOM05D000412 ORTHO05D000429 3.8e-17 92.8 119 37.8
Nn1g09870 Nelumbo nucifera HOM05D000412 ORTHO05D000429 6.4e-17 92.0 194 33.0
ATR0737G129 Amborella trichopoda HOM05D000412 ORTHO05D000429 1.9e-16 90.5 214 30.8
TAR626G0031 Trochodendron aralioides HOM05D000412 ORTHO05D000429 1.9e-16 90.5 128 35.2
PSO541G0192 Papaver somniferum HOM05D000412 ORTHO05D000429 5.1e-14 82.4 159 32.1
PSO675G6246 Papaver somniferum HOM05D000412 ORTHO05D000429 4.3e-13 79.3 190 27.9
Aqoxy1G01355 Aquilegia oxysepala HOM05D000412 ORTHO05D000429 1.1e-11 74.7 190 30.5
MBI06_g04185_MAGBIO Magnolia biondii HOM05D000412 ORTHO05D000429 1.1e-11 74.7 161 29.8
Medtr2g032070 Medicago truncatula HOM05D000412 ORTHO05D048705 1.1e-11 74.7 72 48.6
Cfa017772 Carpinus fangiana HOM05D000412 ORTHO05D000429 1.2e-10 71.2 162 31.5
CDE10G0360 Ceratophyllum demersum HOM05D000412 ORTHO05D000429 2.0e-10 70.5 194 30.4
Haze_18465 Corylus avellana HOM05D000412 ORTHO05D000429 4.4e-10 69.3 160 31.2
Mapoly0103s0072 Marchantia polymorpha HOM05D000412 ORTHO05D000429 7.1e-08 62.0 123 35.0
FvH4_5g30420 Fragaria vesca HOM05D000412 ORTHO05D000429 9.3e-08 61.6 138 32.6
RcHm_v2.0_Chr7g0224861 Rosa chinensis HOM05D000412 ORTHO05D000429 1.2e-07 61.2 199 30.2
FAN04G0677 Fragaria x ananassa HOM05D000412 ORTHO05D000429 2.1e-07 60.5 191 28.8
HPP92_005279 Vanilla planifolia HOM05D000412 ORTHO05D000429 2.1e-07 60.5 116 32.8
MD08G1241700 Malus domestica HOM05D000412 ORTHO05D000429 3.5e-07 59.7 101 37.6
FAN18G2866 Fragaria x ananassa HOM05D000412 ORTHO05D000429 4.6e-07 59.3 187 28.9
MD15G1435500 Malus domestica HOM05D000412 ORTHO05D000429 6.0e-07 58.9 214 28.0
FAN08G3215 Fragaria x ananassa HOM05D000412 ORTHO05D000429 1.0e-06 58.2 185 30.3
QL04p095998 Quercus lobata HOM05D000412 ORTHO05D000429 2.3e-06 57.0 187 24.6


User provided reference genes

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