Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046337 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 2.5e-267 924.9 470 100.0
Actinidia28982 Actinidia chinensis HOM05D005198 ORTHO05D006839 5.6e-222 774.2 498 78.7
Rhsim04G0106800 Rhododendron simsii HOM05D005198 ORTHO05D006839 1.3e-218 763.1 518 74.9
MD15G1424000 Malus domestica HOM05D005198 ORTHO05D006839 4.4e-203 711.4 518 68.5
GSVIVG01038139001 Vitis vinifera HOM05D005198 ORTHO05D006839 4.1e-201 704.9 492 71.3
Prupe.1G207000 Prunus persica HOM05D005198 ORTHO05D006839 5.4e-201 704.5 515 70.3
TAR365G0102 Trochodendron aralioides HOM05D005198 ORTHO05D006839 7.1e-201 704.1 518 70.7
Hma1.2p1_0150F.1_g066860 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 5.1e-199 698.0 491 70.5
Manes.04G036150 Manihot esculenta HOM05D005198 ORTHO05D006839 8.6e-199 697.2 498 69.5
QL10p055731 Quercus lobata HOM05D005198 ORTHO05D006839 1.5e-198 696.4 484 70.7
PGR142G0872 Punica granatum HOM05D005198 ORTHO05D006839 2.5e-198 695.7 516 69.6
Potri.013G126300 Populus trichocarpa HOM05D005198 ORTHO05D006839 2.8e-197 692.2 516 68.4
Sabra13G0105600 Salix brachista HOM05D005198 ORTHO05D006839 1.1e-196 690.3 516 68.0
Nitab4.5_0011921g0010 Nicotiana tabacum HOM05D005198 ORTHO05D006839 3.4e-195 685.3 442 74.0
Dinv07059 Davidia involucrata HOM05D005198 ORTHO05D006839 4.4e-195 684.9 482 71.6
Ciclev10019752m.g Citrus clementina HOM05D005198 ORTHO05D006839 1.9e-193 679.5 498 68.1
Eucgr.H00311 Eucalyptus grandis HOM05D005198 ORTHO05D006839 4.2e-193 678.3 514 67.1
Thecc.01G302200 Theobroma cacao HOM05D005198 ORTHO05D006839 5.4e-193 677.9 498 67.9
Lj1g0021010 Lotus japonicus HOM05D005198 ORTHO05D006839 2.1e-192 676.0 498 65.9
RcHm_v2.0_Chr2g0123631 Rosa chinensis HOM05D005198 ORTHO05D006839 1.0e-191 673.7 520 66.5
vmacro09048 Vaccinium macrocarpon HOM05D005198 ORTHO05D006839 1.3e-191 673.3 719 54.4
TWI63G1273 Tripterygium wilfordii HOM05D005198 ORTHO05D006839 1.7e-191 672.9 508 65.9
Glyma.07G208200 Glycine max HOM05D005198 ORTHO05D006839 5.1e-191 671.4 517 65.4
Oeu020813.1 Olea europaea HOM05D005198 ORTHO05D006839 2.5e-190 669.1 482 68.3
Hund03196 Selenicereus undatus HOM05D005198 ORTHO05D006839 5.6e-190 667.9 493 68.6
Aqoxy2G02750 Aquilegia oxysepala HOM05D005198 ORTHO05D006839 3.6e-189 665.2 517 65.2
Cc03_g14040 Coffea canephora HOM05D005198 ORTHO05D006839 4.7e-189 664.8 507 68.8
Solyc08g014060.4 Solanum lycopersicum HOM05D005198 ORTHO05D006839 6.2e-189 664.5 521 64.5
Sopen08g004940 Solanum pennellii HOM05D005198 ORTHO05D006839 8.1e-189 664.1 524 64.3
Haze_01365 Corylus avellana HOM05D005198 ORTHO05D006839 1.8e-188 662.9 551 63.3
CSS0050366 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 5.2e-188 661.4 340 95.6
Glyma.02G137200 Glycine max HOM05D005198 ORTHO05D006839 6.9e-188 661.0 495 66.7
Medtr4g087280 Medicago truncatula HOM05D005198 ORTHO05D006839 1.5e-187 659.8 516 65.5
PSO675G4502 Papaver somniferum HOM05D005198 ORTHO05D006839 3.4e-187 658.7 515 64.5
TPR.G23517 Trifolium pratense HOM05D005198 ORTHO05D006839 5.8e-187 657.9 483 67.3
FvH4_1g25500 Fragaria vesca HOM05D005198 ORTHO05D006839 9.9e-187 657.1 476 68.9
MELO3C017760.2 Cucumis melo HOM05D005198 ORTHO05D006839 1.7e-186 656.4 517 64.8
PSO732G0749 Papaver somniferum HOM05D005198 ORTHO05D006839 1.7e-186 656.4 515 64.3
ClCG07G015220 Citrullus lanatus HOM05D005198 ORTHO05D006839 4.9e-186 654.8 517 65.0
VMungo0251G3269 Vigna mungo HOM05D005198 ORTHO05D006839 8.4e-186 654.1 518 66.2
CANSAT11G2028 Cannabis sativa HOM05D005198 ORTHO05D006839 1.9e-185 652.9 512 63.7
Duzib151G0783 Durio zibethinus HOM05D005198 ORTHO05D006839 2.4e-185 652.5 516 64.0
CAN.G1411.3 Capsicum annuum HOM05D005198 ORTHO05D006839 4.6e-184 648.3 495 64.0
Psat7g121400 Pisum sativum HOM05D005198 ORTHO05D006839 6.0e-184 647.9 516 64.7
Phvul.003G296400 Phaseolus vulgaris HOM05D005198 ORTHO05D006839 1.0e-183 647.1 496 65.5
Lalb_Chr09g0328121 Lupinus albus HOM05D005198 ORTHO05D006839 1.3e-183 646.7 484 66.5
Gohir.A02G009975 Gossypium hirsutum HOM05D005198 ORTHO05D006839 1.7e-183 646.4 498 64.7
Ah.13g073540 Amaranthus hybridus HOM05D005198 ORTHO05D006839 2.3e-183 646.0 499 64.9
arahy.Tifrunner.gnm1.ann1.A4X0ZB Arachis hypogaea HOM05D005198 ORTHO05D006839 2.3e-183 646.0 518 63.7
FAN28G0627 Fragaria x ananassa HOM05D005198 ORTHO05D006839 6.6e-183 644.4 524 63.2
Sed0009334 Sechium edule HOM05D005198 ORTHO05D006839 2.5e-182 642.5 517 63.2
AUR62002390 Chenopodium quinoa HOM05D005198 ORTHO05D006839 1.3e-181 640.2 513 63.7
Gorai.005G012500 Gossypium raimondii HOM05D005198 ORTHO05D006839 1.6e-181 639.8 501 64.1
arahy.Tifrunner.gnm1.ann1.Q28JUU Arachis hypogaea HOM05D005198 ORTHO05D006839 2.1e-181 639.4 534 61.4
Gohir.D02G010200 Gossypium hirsutum HOM05D005198 ORTHO05D006839 2.8e-181 639.0 498 64.3
SGA_v2.0_scaffold12G06184 Striga asiatica HOM05D005198 ORTHO05D006839 1.8e-180 636.3 492 65.4
Peaxi162Scf00075g01544 Petunia axillaris HOM05D005198 ORTHO05D006839 2.4e-180 636.0 479 65.8
Migut.G01222 Erythranthe guttata HOM05D005198 ORTHO05D006839 1.2e-179 633.6 494 63.2
Lj4A14T50 Lonicera japonica HOM05D005198 ORTHO05D006839 9.9e-179 630.6 447 69.8
SalBow3G0226 Salvia bowleyana HOM05D005198 ORTHO05D006839 2.9e-178 629.0 499 62.1
ECA232G1195 Erigeron canadensis HOM05D005198 ORTHO05D006839 3.2e-177 625.5 515 64.1
FAN26G1320 Fragaria x ananassa HOM05D005198 ORTHO05D006839 1.2e-176 623.6 575 57.9
CsaV3_4G002810 Cucumis sativus L. HOM05D005198 ORTHO05D006839 1.3e-175 620.2 532 61.5
Sp5g28150 Schrenkiella parvula HOM05D005198 ORTHO05D006839 6.7e-175 617.8 492 63.0
FAN19G2119 Fragaria x ananassa HOM05D005198 ORTHO05D006839 2.1e-173 612.8 549 58.8
AUR62023798 Chenopodium quinoa HOM05D005198 ORTHO05D006839 2.8e-173 612.5 511 63.8
FAN23G1744 Fragaria x ananassa HOM05D005198 ORTHO05D006839 1.4e-172 610.1 511 60.7
THA.LOC104813938 Tarenaya hassleriana HOM05D005198 ORTHO05D006839 1.5e-171 606.7 507 62.5
Aa31LG4G3470 Aethionema arabicum HOM05D005198 ORTHO05D006839 2.0e-171 606.3 511 62.0
AT1G73180 Arabidopsis thaliana HOM05D005198 ORTHO05D006839 2.0e-171 606.3 492 61.2
Thhalv10018413m.g Eutrema salsugineum HOM05D005198 ORTHO05D006839 2.6e-171 605.9 492 62.2
Atru.BG.83.p Acer truncatum HOM05D005198 ORTHO05D006839 4.5e-171 605.1 471 65.6
AL2G32950 Arabidopsis lyrata HOM05D005198 ORTHO05D006839 4.5e-171 605.1 492 61.8
CARHR066180 Cardamine hirsuta HOM05D005198 ORTHO05D006839 5.8e-171 604.7 493 61.1
Carub.0002s1997 Capsella rubella HOM05D005198 ORTHO05D006839 1.9e-169 599.7 492 60.6
C06p34190 Brassica napus HOM05D005198 ORTHO05D006839 6.0e-168 594.7 493 61.3
Lsat_1_v5_gn_9_61481 Lactuca sativa HOM05D005198 ORTHO05D006839 1.3e-167 593.6 497 64.6
COL.COLO4_23329 Corchorus olitorius HOM05D005198 ORTHO05D006839 5.1e-167 591.7 496 59.9
A07p29920 Brassica napus HOM05D005198 ORTHO05D006839 4.8e-165 585.1 495 60.8
ATR0733G245 Amborella trichopoda HOM05D005198 ORTHO05D006839 1.8e-164 583.2 485 61.2
BraA07t30630Z Brassica rapa HOM05D005198 ORTHO05D006839 3.9e-159 565.5 494 59.5
Eucgr.L01724 Eucalyptus grandis HOM05D005198 ORTHO05D006839 5.7e-158 561.6 467 63.2
BolC6t38540H Brassica oleracea HOM05D005198 ORTHO05D006839 8.2e-157 557.8 508 58.7
Nitab4.5_0000122g0140 Nicotiana tabacum HOM05D005198 ORTHO05D006839 1.1e-156 557.4 422 65.6
HanXRQChr15g0483441 Helianthus annuus HOM05D005198 ORTHO05D006839 6.9e-156 554.7 462 64.9
Cpa.g.sc9.361 Carica papaya HOM05D005198 ORTHO05D006839 2.9e-154 549.3 518 58.3
Zm00001eb246620 Zea mays HOM05D005198 ORTHO05D006839 1.4e-153 547.0 518 52.9
CDE04G2667 Ceratophyllum demersum HOM05D005198 ORTHO05D006839 1.2e-152 543.9 506 56.3
Dinv33201 Davidia involucrata HOM05D005198 ORTHO05D006839 1.1e-150 537.3 387 72.6
BcaC08g45664 Brassica carinata HOM05D005198 ORTHO05D006839 2.6e-147 526.2 495 57.0
Hma1.2p1_0150F.1_g066870 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 9.4e-145 517.7 381 66.1
CiPaw.02G100600 Carya illinoinensis HOM05D005198 ORTHO05D006839 3.0e-143 512.7 387 69.8
Nn1g09646 Nelumbo nucifera HOM05D005198 ORTHO05D006839 1.6e-136 490.3 366 67.2
Sc25g0002780 Simmondsia chinensis HOM05D005198 ORTHO05D006839 3.2e-121 439.5 345 62.9
Mapoly0011s0080 Marchantia polymorpha HOM05D005198 ORTHO05D006839 1.8e-119 433.7 478 48.1
Pp3c6_14240 Physcomitrium patens HOM05D005198 ORTHO05D006839 5.2e-119 432.2 501 45.3
Atru.chr4.1402 Acer truncatum HOM05D005198 ORTHO05D006839 1.2e-118 431.0 262 78.2
Lalb_Chr16g0384461 Lupinus albus HOM05D005198 ORTHO05D006839 3.7e-117 426.0 272 75.0
MBI11_g23940_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 4.2e-113 412.5 260 74.6
EL10Ac3g06083 Beta vulgaris HOM05D005198 ORTHO05D006839 9.5e-113 411.4 272 72.4
CBR_g53754 Chara braunii HOM05D005198 ORTHO05D006839 6.8e-111 405.2 516 42.4
DCAR_027527 Daucus carota HOM05D005198 ORTHO05D006839 6.3e-109 398.7 266 69.5
unitig_92.g28215 Utricularia gibba HOM05D005198 ORTHO05D006839 2.8e-104 383.3 254 68.5
Eucgr.H00310 Eucalyptus grandis HOM05D005198 ORTHO05D006839 5.8e-102 375.6 419 51.8
SMO145G0177 Selaginella moellendorffii HOM05D005198 ORTHO05D006839 1.3e-98 364.4 492 40.4
SEGI_32957 Sequoiadendron giganteum HOM05D005198 ORTHO05D006839 7.1e-92 342.0 383 50.4
Ca_25383_v3 Cicer arietinum L. HOM05D005198 ORTHO05D006839 4.0e-87 326.2 257 64.2
SHI30329 Sapria himalayana HOM05D005198 ORTHO05D000023 3.1e-79 300.1 281 56.2
AagrBONN_evm.TU.Sc2ySwM_228.1363 Anthoceros agrestis HOM05D005198 ORTHO05D006839 2.5e-73 280.4 265 51.7
Lj3g0007177 Lotus japonicus HOM05D005198 ORTHO05D006839 1.7e-69 267.7 168 75.6
Lj6g0012253 Lotus japonicus HOM05D005198 ORTHO05D006839 1.7e-69 267.7 168 75.6
Ca_18641_v3 Cicer arietinum L. HOM05D005198 ORTHO05D006839 1.4e-68 264.6 426 38.5
DCAR_027526 Daucus carota HOM05D005198 ORTHO05D006839 1.6e-59 234.6 180 70.0
PRCOL_00000684 Prasinoderma coloniale HOM05D005198 ORTHO05D006839 1.9e-57 227.6 440 32.3
CSS0015120 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 5.6e-57 226.1 130 99.2
CAN.G256.23 Capsicum annuum HOM05D005198 ORTHO05D006839 6.2e-56 222.6 154 65.6
Lalb_Chr16g0384471 Lupinus albus HOM05D005198 ORTHO05D006839 2.4e-55 220.7 142 75.4
unitig_92.g28214 Utricularia gibba HOM05D005198 ORTHO05D006839 4.0e-55 219.9 156 71.8
MBI11_g23941_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 1.0e-53 215.3 151 73.5
Hma1.2p1_0554F.1_g177930 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 2.5e-52 210.7 307 44.6
MCO01G167 Micromonas commoda HOM05D005198 ORTHO05D006839 7.1e-52 209.1 514 29.6
SHI30330 Sapria himalayana HOM05D000105 ORTHO05D000023 6.2e-48 196.1 200 49.5
Cre08.g375900 Chlamydomonas reinhardtii HOM05D005198 ORTHO05D006839 5.7e-41 172.9 502 27.3
Nitab4.5_0009616g0020 Nicotiana tabacum HOM05D005198 ORTHO05D006839 1.4e-31 141.7 77 84.4
SEGI_27162 Sequoiadendron giganteum HOM05D005198 ORTHO05D006839 1.4e-31 141.7 126 49.2
BolC3t18675H Brassica oleracea HOM05D005198 ORTHO05D006839 6.1e-27 126.3 101 61.4
Medtr5g091610 Medicago truncatula HOM05D001363 ORTHO05D006839 7.4e-25 119.4 73 74.0
MBI14_g40932_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 8.2e-24 115.9 70 77.1
MBI11_g30564_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 3.0e-18 97.4 58 79.3
Psat1g217120 Pisum sativum HOM05D005198 ORTHO05D006839 4.0e-18 97.1 66 66.7
Dinv33202 Davidia involucrata HOM05D005198 ORTHO05D006839 3.3e-17 94.0 55 76.4
Os02g0606100 Oryza sativa ssp. japonica HOM05D005198 ORTHO05D006839 2.2e-16 91.3 110 52.7
Glyma.03G132500 Glycine max HOM05D005198 ORTHO05D006839 4.8e-16 90.1 74 58.1
BolC2t09126H Brassica oleracea HOM05D005198 ORTHO05D042013 2.6e-14 84.3 129 45.7
C02p30710 Brassica napus HOM05D005198 ORTHO05D042013 5.9e-14 83.2 129 45.0
Lsat_1_v5_gn_5_150841 Lactuca sativa HOM05D005198 ORTHO05D004031 1.7e-13 81.6 45 80.0
SGA_v2.0_scaffold649G53360 Striga asiatica HOM05D005198 ORTHO05D006839 2.5e-12 77.8 48 70.8
COL.COLO4_29149 Corchorus olitorius HOM05D005198 ORTHO05D006839 9.4e-12 75.9 79 53.2
MBI07_g28641_MAGBIO Magnolia biondii HOM05D000992 ORTHO05D001928 5.7e-09 66.6 38 81.6
CDE01G0349 Ceratophyllum demersum HOM05D002708 ORTHO05D003516 3.7e-08 63.9 416 20.4
PGR031G2892 Punica granatum HOM05D002708 ORTHO05D003516 6.3e-08 63.2 101 29.7
Lj4A14T51 Lonicera japonica HOM05D005198 ORTHO05D006839 8.3e-08 62.8 55 76.4
Manes.16G132500 Manihot esculenta HOM05D002708 ORTHO05D003516 2.4e-07 61.2 103 28.2
Sabra06G0209700 Salix brachista HOM05D002708 ORTHO05D003516 2.4e-07 61.2 103 28.2
Cre03.g190100 Chlamydomonas reinhardtii HOM05D002708 ORTHO05D003516 4.1e-07 60.5 88 30.7
BraA02t06891Z Brassica rapa HOM05D005198 ORTHO05D040308 7.0e-07 59.7 56 51.8
Eucgr.J02249 Eucalyptus grandis HOM05D002708 ORTHO05D003516 9.1e-07 59.3 103 29.1
Manes.03G006600 Manihot esculenta HOM05D002708 ORTHO05D003516 9.1e-07 59.3 103 27.2
Medtr2g088350 Medicago truncatula HOM05D000088 ORTHO05D000830 1.2e-06 58.9 100 37.0
Oeu037396.1 Olea europaea HOM05D002708 ORTHO05D003516 1.2e-06 58.9 103 28.2
Cfa017363 Carpinus fangiana HOM05D002708 ORTHO05D003516 1.6e-06 58.5 103 29.1
Cc00_g16980 Coffea canephora HOM05D002708 ORTHO05D003516 1.6e-06 58.5 87 28.7
COL.COLO4_30887 Corchorus olitorius HOM05D002708 ORTHO05D003516 1.6e-06 58.5 87 29.9
Haze_20811 Corylus avellana HOM05D002708 ORTHO05D003516 1.6e-06 58.5 103 29.1
MCO03G077 Micromonas commoda HOM05D002708 ORTHO05D003516 1.6e-06 58.5 134 26.1
TWI32G0606 Tripterygium wilfordii HOM05D002708 ORTHO05D003516 1.6e-06 58.5 112 29.5
MBI03_g14783_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 2.0e-06 58.2 38 68.4
Hund22205 Selenicereus undatus HOM05D002708 ORTHO05D003516 2.0e-06 58.2 103 29.1
ClCG09G010490 Citrullus lanatus HOM05D002708 ORTHO05D003516 2.7e-06 57.8 103 28.2
MELO3C023701.2 Cucumis melo HOM05D002708 ORTHO05D003516 2.7e-06 57.8 103 28.2
CsaV3_7G024030 Cucumis sativus L. HOM05D002708 ORTHO05D003516 2.7e-06 57.8 103 28.2
vmacro21095 Vaccinium macrocarpon HOM05D002708 ORTHO05D003516 2.7e-06 57.8 103 28.2
MELO3C013234.2 Cucumis melo HOM05D002708 ORTHO05D003516 3.5e-06 57.4 103 28.2
CsaV3_7G021200 Cucumis sativus L. HOM05D002708 ORTHO05D003516 3.5e-06 57.4 103 28.2
Ciclev10007609m.g Citrus clementina HOM05D002708 ORTHO05D003516 4.5e-06 57.0 87 28.7
Aa31LG1G4150 Aethionema arabicum HOM05D002708 ORTHO05D003516 5.9e-06 56.6 87 28.7
EL10Ac4g08928 Beta vulgaris HOM05D002708 ORTHO05D003516 5.9e-06 56.6 103 29.1
Hma1.2p1_0021F.1_g014376 Hydrangea macrophylla HOM05D002708 ORTHO05D003516 5.9e-06 56.6 103 28.2
Prupe.6G358600 Prunus persica HOM05D002708 ORTHO05D003516 7.7e-06 56.2 87 28.7


User provided reference genes

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