Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046330 Camellia sinensis var. sinensis HOM05D004120 ORTHO05D004951 3.0e-199 698.4 366 100.0
Dinv28953 Davidia involucrata HOM05D004120 ORTHO05D004951 6.6e-170 600.9 368 85.3
Hma1.2p1_0585F.1_g183700 Hydrangea macrophylla HOM05D004120 ORTHO05D004951 1.2e-168 596.7 378 82.8
Dinv25212 Davidia involucrata HOM05D004120 ORTHO05D004951 3.4e-166 588.6 377 85.1
GSVIVG01013166001 Vitis vinifera HOM05D004120 ORTHO05D004951 9.2e-164 580.5 365 81.9
PGSC0003DMG402001159 Solanum tuberosum HOM05D004120 ORTHO05D004951 2.8e-160 568.9 371 78.7
Sopen08g001030 Solanum pennellii HOM05D004120 ORTHO05D004951 8.9e-159 563.9 372 78.0
Rhsim11G0014500 Rhododendron simsii HOM05D004120 ORTHO05D004951 2.0e-158 562.8 377 79.0
DCAR_008274 Daucus carota HOM05D004120 ORTHO05D004951 1.1e-156 557.0 367 77.9
MD00G1220600 Malus domestica HOM05D004120 ORTHO05D004951 3.2e-156 555.4 370 78.9
TAR629G2715 Trochodendron aralioides HOM05D004120 ORTHO05D004951 2.0e-155 552.7 375 77.3
CAN.G1216.15 Capsicum annuum HOM05D004120 ORTHO05D004951 7.8e-155 550.8 368 77.4
Cc08_g02620 Coffea canephora HOM05D004120 ORTHO05D004951 6.6e-154 547.7 379 78.1
Nn6g33597 Nelumbo nucifera HOM05D004120 ORTHO05D004951 4.3e-153 545.0 380 75.3
Sed0006792 Sechium edule HOM05D004120 ORTHO05D004951 1.2e-152 543.5 370 76.8
Prupe.5G038500 Prunus persica HOM05D004120 ORTHO05D004951 2.1e-152 542.7 369 77.5
AUR62018721 Chenopodium quinoa HOM05D004120 ORTHO05D004951 3.6e-152 542.0 376 76.3
Lsat_1_v5_gn_6_79560 Lactuca sativa HOM05D004120 ORTHO05D004951 6.2e-152 541.2 381 74.5
Cfa012429 Carpinus fangiana HOM05D004120 ORTHO05D004951 2.3e-151 539.3 374 76.7
Nn1g00518 Nelumbo nucifera HOM05D004120 ORTHO05D004951 2.3e-151 539.3 379 76.0
vmacro00332 Vaccinium macrocarpon HOM05D004120 ORTHO05D004951 3.1e-151 538.9 432 69.0
CiPaw.11G092700 Carya illinoinensis HOM05D004120 ORTHO05D004951 5.2e-151 538.1 360 78.6
Eucgr.D02191 Eucalyptus grandis HOM05D004120 ORTHO05D004951 4.4e-150 535.0 317 84.9
Oeu053047.1 Olea europaea HOM05D004120 ORTHO05D004951 9.8e-150 533.9 362 76.2
CiPaw.12G063200 Carya illinoinensis HOM05D004120 ORTHO05D004951 1.3e-149 533.5 366 77.0
Ciclev10031866m.g Citrus clementina HOM05D004120 ORTHO05D004951 1.3e-149 533.5 370 77.0
FvH4_5g21880 Fragaria vesca HOM05D004120 ORTHO05D004951 1.7e-149 533.1 370 76.5
Oeu028027.1 Olea europaea HOM05D004120 ORTHO05D004951 2.2e-149 532.7 366 77.3
arahy.Tifrunner.gnm1.ann1.482M5A Arachis hypogaea HOM05D004120 ORTHO05D004951 2.9e-149 532.3 368 76.1
arahy.Tifrunner.gnm1.ann1.G7H05W Arachis hypogaea HOM05D004120 ORTHO05D004951 2.9e-149 532.3 368 76.1
ECA240G4620 Erigeron canadensis HOM05D004120 ORTHO05D004951 2.9e-149 532.3 377 75.3
FAN18G3415 Fragaria x ananassa HOM05D004120 ORTHO05D004951 2.9e-149 532.3 370 76.5
Duzib084G1060 Durio zibethinus HOM05D004120 ORTHO05D004951 8.3e-149 530.8 372 74.5
QL12p005624 Quercus lobata HOM05D004120 ORTHO05D004951 1.9e-148 529.6 333 84.7
CANSAT21G2618 Cannabis sativa HOM05D004120 ORTHO05D004951 3.2e-148 528.9 375 74.4
PGR031G2717 Punica granatum HOM05D004120 ORTHO05D004951 3.2e-148 528.9 324 82.7
TWI81G0459 Tripterygium wilfordii HOM05D004120 ORTHO05D004951 3.2e-148 528.9 378 74.6
COL.COLO4_17048 Corchorus olitorius HOM05D004120 ORTHO05D004951 4.1e-148 528.5 325 83.1
FAN04G1856 Fragaria x ananassa HOM05D004120 ORTHO05D004951 4.1e-148 528.5 368 76.9
Thecc.03G228600 Theobroma cacao HOM05D004120 ORTHO05D004951 7.1e-148 527.7 344 78.5
EL10Ac5g12129 Beta vulgaris HOM05D004120 ORTHO05D004951 9.2e-148 527.3 370 75.4
Gohir.D08G177300 Gossypium hirsutum HOM05D004120 ORTHO05D004951 9.2e-148 527.3 372 75.8
CsaV3_3G001840 Cucumis sativus L. HOM05D004120 ORTHO05D004951 4.6e-147 525.0 370 74.6
RcHm_v2.0_Chr7g0209431 Rosa chinensis HOM05D004120 ORTHO05D004951 7.8e-147 524.2 368 75.5
ClCG10G001730 Citrullus lanatus HOM05D004120 ORTHO05D004951 1.0e-146 523.9 369 75.1
MELO3C013859.2 Cucumis melo HOM05D004120 ORTHO05D004951 3.9e-146 521.9 370 74.3
Manes.17G013200 Manihot esculenta HOM05D004120 ORTHO05D004951 6.6e-146 521.2 337 78.9
Gohir.A08G156900 Gossypium hirsutum HOM05D004120 ORTHO05D004951 1.1e-145 520.4 343 78.7
Hund14402 Selenicereus undatus HOM05D004120 ORTHO05D004951 1.1e-145 520.4 376 74.2
HanXRQChr03g0084021 Helianthus annuus HOM05D004120 ORTHO05D004951 1.9e-145 519.6 378 74.3
VMungo1215G0016 Vigna mungo HOM05D004120 ORTHO05D004951 3.3e-145 518.8 365 75.6
Lalb_Chr05g0213941 Lupinus albus HOM05D004120 ORTHO05D004951 7.3e-145 517.7 363 74.7
Cpa.g.sc239.7 Carica papaya HOM05D004120 ORTHO05D004951 1.2e-144 516.9 380 73.4
Gorai.004G185700 Gossypium raimondii HOM05D004120 ORTHO05D004951 1.2e-144 516.9 389 72.2
Peaxi162Scf00045g00028 Petunia axillaris HOM05D004120 ORTHO05D004951 1.2e-144 516.9 362 74.0
Phvul.002G007300 Phaseolus vulgaris HOM05D004120 ORTHO05D004951 2.8e-144 515.8 365 74.8
Potri.001G143400 Populus trichocarpa HOM05D004120 ORTHO05D004951 2.8e-144 515.8 382 71.7
MSTRG.13757 Avicennia marina HOM05D004120 ORTHO05D004951 1.4e-143 513.5 373 72.9
Sc01g0007480 Simmondsia chinensis HOM05D004120 ORTHO05D004951 1.8e-143 513.1 354 77.1
Ca_24652_v3 Cicer arietinum L. HOM05D004120 ORTHO05D004951 3.1e-143 512.3 357 75.9
Lj2g0014948 Lotus japonicus HOM05D004120 ORTHO05D004951 8.9e-143 510.8 369 73.7
Lalb_Chr16g0379111 Lupinus albus HOM05D004120 ORTHO05D004951 4.4e-142 508.4 319 80.6
Glyma.11G043400 Glycine max HOM05D004120 ORTHO05D004951 7.6e-142 507.7 357 75.4
Migut.E00930 Erythranthe guttata HOM05D004120 ORTHO05D004951 1.7e-141 506.5 376 72.6
Ah.12g054990 Amaranthus hybridus HOM05D004120 ORTHO05D004951 6.4e-141 504.6 372 73.7
Medtr5g014430 Medicago truncatula HOM05D004120 ORTHO05D004951 8.4e-141 504.2 362 76.0
TPR.G7833 Trifolium pratense HOM05D004120 ORTHO05D004951 1.9e-140 503.1 367 74.1
Aqoxy3G02384 Aquilegia oxysepala HOM05D004120 ORTHO05D004951 3.2e-140 502.3 380 70.3
Sabra01G0111800 Salix brachista HOM05D004120 ORTHO05D004951 4.6e-139 498.4 409 66.0
AUR62007285 Chenopodium quinoa HOM05D004120 ORTHO05D004951 1.7e-138 496.5 370 72.7
ATR0049G040 Amborella trichopoda HOM05D004120 ORTHO05D004951 3.9e-138 495.4 331 74.6
PSO063G1634 Papaver somniferum HOM05D004120 ORTHO05D004951 1.5e-137 493.4 333 76.3
CDE03G0015 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 2.5e-137 492.7 324 76.9
PSO782G3668 Papaver somniferum HOM05D004120 ORTHO05D004951 9.6e-137 490.7 330 76.4
AL4G31300 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 1.8e-135 486.5 370 68.6
unitig_699.g19781 Utricularia gibba HOM05D004120 ORTHO05D004951 7.6e-134 481.1 361 70.9
Thhalv10016805m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 1.3e-133 480.3 383 66.3
THA.LOC104807951 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 2.2e-133 479.6 358 69.8
AT2G35260 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 2.9e-133 479.2 383 67.6
BcaB02g09465 Brassica carinata HOM05D004120 ORTHO05D004951 6.4e-133 478.0 382 66.8
A03p19500 Brassica napus HOM05D004120 ORTHO05D004951 6.4e-133 478.0 379 67.0
BraA03t11203Z Brassica rapa HOM05D004120 ORTHO05D004951 2.4e-132 476.1 379 66.8
Carub.0004s1696 Capsella rubella HOM05D004120 ORTHO05D004951 3.2e-132 475.7 380 65.8
Solyc08g005010.4 Solanum lycopersicum HOM05D004120 ORTHO05D004951 4.2e-132 475.3 326 75.8
unitig_52.g17209 Utricularia gibba HOM05D004120 ORTHO05D004951 5.4e-132 474.9 310 78.4
Sp4g17480 Schrenkiella parvula HOM05D004120 ORTHO05D004951 7.1e-132 474.6 383 65.8
SGA_v2.0_scaffold54G19447 Striga asiatica HOM05D004120 ORTHO05D004951 7.1e-132 474.6 425 60.9
BraA05t19989Z Brassica rapa HOM05D004120 ORTHO05D004951 9.3e-132 474.2 379 66.8
C03p22720 Brassica napus HOM05D004120 ORTHO05D004951 2.1e-131 473.0 382 66.2
BcaC02g11630 Brassica carinata HOM05D004120 ORTHO05D004951 4.6e-131 471.9 380 65.8
A05p10510 Brassica napus HOM05D004120 ORTHO05D004951 4.6e-131 471.9 379 66.5
C04p12920 Brassica napus HOM05D004120 ORTHO05D004951 4.6e-131 471.9 380 65.8
Zm00001eb426630 Zea mays HOM05D004120 ORTHO05D004951 4.6e-131 471.9 298 77.2
CARHR129420 Cardamine hirsuta HOM05D004120 ORTHO05D004951 1.0e-130 470.7 378 65.9
BcaC01g05734 Brassica carinata HOM05D004120 ORTHO05D004951 1.3e-130 470.3 382 66.0
BolC4t22936H Brassica oleracea HOM05D004120 ORTHO05D004951 1.7e-130 469.9 381 65.6
BolC3t14671H Brassica oleracea HOM05D004120 ORTHO05D004951 8.7e-130 467.6 382 66.0
THA.LOC104798329 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 4.3e-129 465.3 301 77.1
HPP92_022143 Vanilla planifolia HOM05D004120 ORTHO05D004951 1.3e-128 463.8 293 77.5
ECA246G0968 Erigeron canadensis HOM05D004120 ORTHO05D004951 1.6e-128 463.4 340 72.1
HPP92_022140 Vanilla planifolia HOM05D004120 ORTHO05D004951 2.8e-128 462.6 293 77.1
Os03g0100030 Oryza sativa ssp. japonica HOM05D004120 ORTHO05D004951 3.6e-128 462.2 279 79.2
Aa31LG6G560 Aethionema arabicum HOM05D004120 ORTHO05D004951 5.3e-127 458.4 279 80.3
AL716U10010 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 1.5e-126 456.8 370 65.9
Psat2g173200 Pisum sativum HOM05D004120 ORTHO05D004951 1.5e-126 456.8 364 68.4
Thhalv10025287m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 2.9e-125 452.6 299 74.6
C07p49190 Brassica napus HOM05D004120 ORTHO05D004951 5.4e-124 448.4 308 72.7
Carub.0007s2352 Capsella rubella HOM05D004120 ORTHO05D004951 5.4e-124 448.4 301 73.1
Sp7g16270 Schrenkiella parvula HOM05D004120 ORTHO05D004951 9.3e-124 447.6 284 76.4
CARHR224560 Cardamine hirsuta HOM05D004120 ORTHO05D004951 3.5e-123 445.7 284 76.1
AL7G36690 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 1.3e-122 443.7 282 76.2
AT4G17840 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 1.3e-122 443.7 284 75.7
BcaNung00052 Brassica carinata HOM05D004120 ORTHO05D004951 1.3e-122 443.7 273 78.8
A03p50800 Brassica napus HOM05D004120 ORTHO05D004951 1.3e-122 443.7 283 76.3
BraA03t14169Z Brassica rapa HOM05D004120 ORTHO05D004951 1.3e-122 443.7 283 76.3
BcaC09g51598 Brassica carinata HOM05D004120 ORTHO05D004951 8.7e-122 441.0 275 77.8
A01p09890 Brassica napus HOM05D004120 ORTHO05D004951 8.7e-122 441.0 275 77.5
C01p11590 Brassica napus HOM05D004120 ORTHO05D004951 8.7e-122 441.0 275 77.8
BolC1t01127H Brassica oleracea HOM05D004120 ORTHO05D004951 8.7e-122 441.0 275 77.8
BraA01t00933Z Brassica rapa HOM05D004120 ORTHO05D004951 8.7e-122 441.0 275 77.8
Glyma.01G198500 Glycine max HOM05D004120 ORTHO05D004951 2.5e-121 439.5 323 73.1
Aa31LG9G15290 Aethionema arabicum HOM05D004120 ORTHO05D004951 1.8e-119 433.3 423 58.2
Atru.chr6.1717 Acer truncatum HOM05D004120 ORTHO05D004951 4.3e-113 412.1 306 72.2
BolC7t45429H Brassica oleracea HOM05D004120 ORTHO05D004951 9.0e-111 404.4 275 74.2
MD06G1033000 Malus domestica HOM05D004120 ORTHO05D004951 1.1e-108 397.5 263 78.7
SEGI_24472 Sequoiadendron giganteum HOM05D004120 ORTHO05D004951 3.2e-108 396.0 286 68.5
Nitab4.5_0000804g0170 Nicotiana tabacum HOM05D004120 ORTHO05D004951 3.7e-104 382.5 211 90.0
Haze_08240 Corylus avellana HOM05D004120 ORTHO05D004951 4.1e-103 379.0 332 65.4
Duzib205G1837 Durio zibethinus HOM05D004120 ORTHO05D004951 1.2e-102 377.5 298 69.8
Actinidia25961 Actinidia chinensis HOM05D004120 ORTHO05D004951 1.9e-97 360.1 251 76.1
Actinidia28172 Actinidia chinensis HOM05D004120 ORTHO05D004951 4.8e-96 355.5 190 94.7
FAN13G1981 Fragaria x ananassa HOM05D004120 ORTHO05D004951 8.5e-93 344.7 270 71.5
FAN08G2335 Fragaria x ananassa HOM05D004120 ORTHO05D004951 9.4e-92 341.3 270 71.1
unitig_744.g24311 Utricularia gibba HOM05D004120 ORTHO05D004951 2.6e-89 333.2 301 61.5
Mapoly0008s0099 Marchantia polymorpha HOM05D004120 ORTHO05D004951 3.3e-89 332.8 273 57.9
Pp3c10_10980 Physcomitrium patens HOM05D004120 ORTHO05D004951 1.1e-87 327.8 270 60.0
Pp3c14_25270 Physcomitrium patens HOM05D004120 ORTHO05D004951 1.5e-86 323.9 273 59.3
Nitab4.5_0002539g0020 Nicotiana tabacum HOM05D004120 ORTHO05D004951 2.3e-82 310.1 257 67.3
SMO356G0344 Selaginella moellendorffii HOM05D004120 ORTHO05D004951 3.5e-70 269.6 255 50.6
CDE06G0385 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 3.8e-69 266.2 240 60.4
arahy.Tifrunner.gnm1.ann1.7CR4HZ Arachis hypogaea HOM05D004120 ORTHO05D004951 5.4e-63 245.7 181 71.8
arahy.Tifrunner.gnm1.ann1.K2V32T Arachis hypogaea HOM05D004120 ORTHO05D004951 9.1e-63 245.0 180 71.7
HanXRQChr05g0153901 Helianthus annuus HOM05D004120 ORTHO05D004951 2.7e-62 243.4 162 80.9
arahy.Tifrunner.gnm1.ann1.WRTU1C Arachis hypogaea HOM05D004120 ORTHO05D004951 6.5e-61 238.8 181 70.2
arahy.Tifrunner.gnm1.ann1.3C7WBJ Arachis hypogaea HOM05D004120 ORTHO05D004951 9.5e-60 235.0 136 87.5
arahy.Tifrunner.gnm1.ann1.4R7L3N Arachis hypogaea HOM05D004120 ORTHO05D004951 1.9e-44 184.1 104 87.5
arahy.Tifrunner.gnm1.ann1.B3D4NA Arachis hypogaea HOM05D004120 ORTHO05D004951 1.2e-43 181.4 116 79.3
arahy.Tifrunner.gnm1.ann1.AE9Z3E Arachis hypogaea HOM05D004120 ORTHO05D004951 2.1e-43 180.6 117 78.6
AagrBONN_evm.TU.Sc2ySwM_117.2801 Anthoceros agrestis HOM05D010715 ORTHO05D004951 8.3e-40 168.7 157 54.8
arahy.Tifrunner.gnm1.ann1.RCE8PR Arachis hypogaea HOM05D004120 ORTHO05D004951 6.6e-37 159.1 132 65.9
arahy.Tifrunner.gnm1.ann1.E125G1 Arachis hypogaea HOM05D004120 ORTHO05D004951 2.9e-32 143.7 79 87.3
arahy.Tifrunner.gnm1.ann1.BQ9W36 Arachis hypogaea HOM05D004120 ORTHO05D004951 1.4e-31 141.4 78 87.2
arahy.Tifrunner.gnm1.ann1.U1DJ88 Arachis hypogaea HOM05D004120 ORTHO05D007788 4.1e-31 139.8 75 90.7
Aa31sc618G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 1.5e-28 131.3 98 70.4
arahy.Tifrunner.gnm1.ann1.L0EJKI Arachis hypogaea HOM05D004120 ORTHO05D004951 1.2e-27 128.3 62 93.5
CBR_g56906 Chara braunii HOM05D004120 ORTHO05D004951 5.2e-26 122.9 114 49.1
arahy.Tifrunner.gnm1.ann1.H82JQN Arachis hypogaea HOM05D004120 ORTHO05D021518 7.6e-25 119.0 88 68.2
AagrBONN_evm.TU.Sc2ySwM_117.3803 Anthoceros agrestis HOM05D004120 ORTHO05D004951 9.9e-25 118.6 102 52.9
RcHm_v2.0_Chr6g0284251 Rosa chinensis HOM05D004120 ORTHO05D004951 2.9e-24 117.1 72 77.8
EL10Ac1g01819 Beta vulgaris HOM05D004120 ORTHO05D023811 1.7e-21 107.8 69 78.3
arahy.Tifrunner.gnm1.ann1.JI8VIY Arachis hypogaea HOM05D004120 ORTHO05D021518 2.8e-19 100.5 105 55.2
arahy.Tifrunner.gnm1.ann1.NR0HVE Arachis hypogaea HOM05D004120 ORTHO05D021518 6.9e-18 95.9 57 87.7
CBR_g19263 Chara braunii HOM05D004120 ORTHO05D004951 8.9e-18 95.5 141 40.4
AUR62039713 Chenopodium quinoa HOM05D004317 ORTHO05D005031 2.0e-17 94.4 55 81.8
CAN.G36.13 Capsicum annuum HOM05D004120 ORTHO05D004951 5.4e-15 86.3 59 66.1
CAN.G399.4 Capsicum annuum HOM05D004120 ORTHO05D004951 1.3e-13 81.6 55 76.4
Aa31sc185G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 9.3e-07 58.9 36 72.2
A01p32880 Brassica napus HOM05D004120 ORTHO05D023811 9.3e-07 58.9 28 96.4
A06p35780 Brassica napus HOM05D004120 ORTHO05D023811 9.3e-07 58.9 28 96.4
BraA01t03409Z Brassica rapa HOM05D004120 ORTHO05D023811 9.3e-07 58.9 28 96.4
BraA06t26504Z Brassica rapa HOM05D004120 ORTHO05D033838 7.9e-06 55.8 29 86.2


User provided reference genes

Program Settings