Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046327 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 0.0e+00 1312.0 669 100.0
CSS0008925 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 0.0e+00 1300.4 671 99.1
Actinidia17196 Actinidia chinensis HOM05D002544 ORTHO05D007856 0.0e+00 1098.6 671 82.3
Actinidia06481 Actinidia chinensis HOM05D002544 ORTHO05D007856 0.0e+00 1087.4 671 81.7
Dinv19050 Davidia involucrata HOM05D002544 ORTHO05D007856 1.2e-310 1069.3 671 80.2
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 4.2e-300 1034.2 663 79.3
Hma1.2p1_0158F.1_g070010 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 1.0e-293 1013.1 648 78.7
vmacro20587 Vaccinium macrocarpon HOM05D002544 ORTHO05D007856 2.3e-290 1001.9 679 75.8
GSVIVG01030701001 Vitis vinifera HOM05D002544 ORTHO05D007856 1.0e-285 986.5 672 74.7
CiPaw.03G074200 Carya illinoinensis HOM05D002544 ORTHO05D007856 3.0e-277 958.4 643 74.3
Lj4A258G27 Lonicera japonica HOM05D002544 ORTHO05D007856 3.0e-277 958.4 653 74.4
QL03p020295 Quercus lobata HOM05D002544 ORTHO05D007856 3.9e-277 958.0 662 73.1
TAR622G0658 Trochodendron aralioides HOM05D002544 ORTHO05D007856 1.1e-276 956.4 673 71.3
Prupe.3G165300 Prunus persica HOM05D002544 ORTHO05D007856 6.2e-275 950.7 646 72.6
Gohir.D05G289100 Gossypium hirsutum HOM05D002544 ORTHO05D007856 1.2e-273 946.4 671 71.4
Gohir.A05G287900 Gossypium hirsutum HOM05D002544 ORTHO05D007856 8.3e-272 940.3 671 70.6
Gorai.009G304200 Gossypium raimondii HOM05D002544 ORTHO05D007856 3.2e-271 938.3 671 70.9
Duzib128G1814 Durio zibethinus HOM05D002544 ORTHO05D007856 9.2e-271 936.8 700 67.3
RcHm_v2.0_Chr3g0492061 Rosa chinensis HOM05D002544 ORTHO05D007856 9.2e-271 936.8 669 69.8
Atru.chr1.2033 Acer truncatum HOM05D002544 ORTHO05D007856 1.3e-269 932.9 670 69.7
MD17G1267200 Malus domestica HOM05D002544 ORTHO05D007856 2.3e-269 932.2 670 69.6
Glyma.18G041900 Glycine max HOM05D002544 ORTHO05D007856 3.3e-268 928.3 665 68.7
TWI53G0412 Tripterygium wilfordii HOM05D002544 ORTHO05D007856 4.7e-267 924.5 662 70.1
Nn3g18419 Nelumbo nucifera HOM05D002544 ORTHO05D007856 8.1e-267 923.7 669 68.6
Glyma.11G214700 Glycine max HOM05D002544 ORTHO05D007856 4.0e-266 921.4 658 69.0
Manes.02G078600 Manihot esculenta HOM05D002544 ORTHO05D007856 4.0e-266 921.4 672 67.4
FvH4_1g30060 Fragaria vesca HOM05D002544 ORTHO05D007856 5.2e-266 921.0 669 68.5
Phvul.001G228700 Phaseolus vulgaris HOM05D002544 ORTHO05D007856 4.9e-264 914.4 665 68.3
Lalb_Chr18g0053551 Lupinus albus HOM05D002544 ORTHO05D007856 1.1e-263 913.3 670 68.5
DCAR_014158 Daucus carota HOM05D002544 ORTHO05D007856 1.4e-263 912.9 670 68.2
Haze_14286 Corylus avellana HOM05D002544 ORTHO05D007856 2.7e-262 908.7 669 69.7
Sed0025118 Sechium edule HOM05D002544 ORTHO05D007856 3.5e-262 908.3 669 68.5
VMungo1383G1931 Vigna mungo HOM05D002544 ORTHO05D007856 6.0e-262 907.5 660 67.3
CsaV3_3G017820 Cucumis sativus L. HOM05D002544 ORTHO05D007856 1.7e-261 906.0 669 67.9
Sopen11g006270 Solanum pennellii HOM05D002544 ORTHO05D007856 1.7e-261 906.0 669 67.3
Solyc11g011480.2 Solanum lycopersicum HOM05D002544 ORTHO05D007856 5.1e-261 904.4 669 67.1
Potri.004G082900 Populus trichocarpa HOM05D002544 ORTHO05D007856 1.5e-260 902.9 671 67.8
Ciclev10000514m.g Citrus clementina HOM05D002544 ORTHO05D007856 1.9e-260 902.5 662 67.5
arahy.Tifrunner.gnm1.ann1.5E142I Arachis hypogaea HOM05D002544 ORTHO05D007856 4.3e-260 901.4 666 67.7
Medtr3g065110 Medicago truncatula HOM05D002544 ORTHO05D007856 7.3e-260 900.6 665 67.4
Lj6g0017134 Lotus japonicus HOM05D002544 ORTHO05D007856 1.2e-259 899.8 660 67.9
TPR.G23205 Trifolium pratense HOM05D002544 ORTHO05D007856 1.2e-259 899.8 673 67.2
arahy.Tifrunner.gnm1.ann1.644H52 Arachis hypogaea HOM05D002544 ORTHO05D007856 3.6e-259 898.3 669 67.3
Ca_17085_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007856 6.2e-259 897.5 643 69.4
Nitab4.5_0011135g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 1.4e-258 896.3 649 67.8
CAN.G222.63 Capsicum annuum HOM05D002544 ORTHO05D007856 3.4e-257 891.7 671 65.6
Eucgr.F02879 Eucalyptus grandis HOM05D002544 ORTHO05D007856 1.7e-256 889.4 687 65.5
HanXRQChr16g0532811 Helianthus annuus HOM05D002544 ORTHO05D007856 2.9e-256 888.6 671 68.0
CANSAT25G3407 Cannabis sativa HOM05D002544 ORTHO05D007856 3.2e-255 885.2 664 66.4
Migut.K00933 Erythranthe guttata HOM05D002544 ORTHO05D007856 1.2e-254 883.2 667 66.6
Cfa007785 Carpinus fangiana HOM05D002544 ORTHO05D007856 2.7e-254 882.1 635 70.1
COL.COLO4_38545 Corchorus olitorius HOM05D002544 ORTHO05D007856 7.8e-254 880.6 693 64.5
PGR004G1819 Punica granatum HOM05D002544 ORTHO05D007856 2.1e-251 872.5 665 66.3
Oeu030291.2 Olea europaea HOM05D002544 ORTHO05D007856 1.4e-250 869.8 719 62.4
Sc04g0005080 Simmondsia chinensis HOM05D002544 ORTHO05D007856 3.4e-249 865.1 667 65.1
PSO063G6024 Papaver somniferum HOM05D002544 ORTHO05D007856 7.6e-249 864.0 671 63.9
AL5G33420 Arabidopsis lyrata HOM05D002544 ORTHO05D007856 3.8e-248 861.7 665 64.8
AT3G52640 Arabidopsis thaliana HOM05D002544 ORTHO05D007856 1.4e-247 859.8 663 64.6
PSO782G4267 Papaver somniferum HOM05D002544 ORTHO05D007856 1.2e-246 856.7 671 63.6
Carub.0005s1906 Capsella rubella HOM05D002544 ORTHO05D007856 2.7e-246 855.5 663 64.4
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 4.6e-246 854.7 735 60.5
THA.LOC104805637 Tarenaya hassleriana HOM05D002544 ORTHO05D007856 1.0e-245 853.6 696 61.9
Sp5g09650 Schrenkiella parvula HOM05D002544 ORTHO05D007856 1.5e-244 849.7 663 64.1
Aqoxy3G04067 Aquilegia oxysepala HOM05D002544 ORTHO05D007856 3.3e-244 848.6 669 63.4
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 3.3e-244 848.6 663 64.3
Thecc.10G105700 Theobroma cacao HOM05D002544 ORTHO05D007856 7.4e-244 847.4 581 72.5
FAN28G1090 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.6e-243 846.3 669 65.0
Peaxi162Scf00464g00433 Petunia axillaris HOM05D002544 ORTHO05D007856 4.8e-243 844.7 649 64.9
Lsat_1_v5_gn_3_63981 Lactuca sativa HOM05D002544 ORTHO05D007856 1.1e-242 843.6 647 66.9
A04p06810 Brassica napus HOM05D002544 ORTHO05D007856 2.4e-242 842.4 674 63.2
C04p40360 Brassica napus HOM05D002544 ORTHO05D007856 2.2e-240 835.9 666 63.4
BcaB02g08559 Brassica carinata HOM05D002544 ORTHO05D007856 3.8e-240 835.1 665 63.2
BcaC02g09234 Brassica carinata HOM05D002544 ORTHO05D007856 1.4e-239 833.2 667 62.7
ClCG05G010690 Citrullus lanatus HOM05D002544 ORTHO05D007856 1.8e-237 826.2 705 61.3
Aa31LG10G7700 Aethionema arabicum HOM05D002544 ORTHO05D007856 2.5e-236 822.4 682 61.3
EL10Ac2g03312 Beta vulgaris HOM05D002544 ORTHO05D007856 7.4e-236 820.8 670 61.9
BraA04t16380Z Brassica rapa HOM05D002544 ORTHO05D007856 8.1e-235 817.4 725 58.6
Thhalv10010197m.g Eutrema salsugineum HOM05D002544 ORTHO05D007856 1.1e-234 817.0 634 63.4
FAN19G2740 Fragaria x ananassa HOM05D002544 ORTHO05D007856 4.5e-233 811.6 576 70.0
Cc07_g13210 Coffea canephora HOM05D002544 ORTHO05D007856 8.4e-232 807.4 572 69.6
BolC4t25616H Brassica oleracea HOM05D002544 ORTHO05D007856 1.2e-230 803.5 736 57.2
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 2.1e-230 802.7 638 63.9
MBI13_g24909_MAGBIO Magnolia biondii HOM05D002544 ORTHO05D007856 2.1e-227 792.7 703 59.6
ATR0118G015 Amborella trichopoda HOM05D002544 ORTHO05D007856 4.1e-226 788.5 671 60.4
Cpa.g.sc116.76 Carica papaya HOM05D002544 ORTHO05D007856 5.3e-226 788.1 557 70.7
Nitab4.5_0006562g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 1.0e-224 783.9 665 61.2
AUR62040737 Chenopodium quinoa HOM05D002544 ORTHO05D007856 1.7e-224 783.1 662 60.3
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 7.9e-222 774.2 669 59.3
Os02g0736500 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007856 8.2e-219 764.2 667 59.2
Psat5g119600 Pisum sativum HOM05D002544 ORTHO05D007856 6.9e-218 761.1 577 66.0
Ah.10g032440 Amaranthus hybridus HOM05D002544 ORTHO05D007856 2.6e-217 759.2 693 57.4
CDE05G1209 Ceratophyllum demersum HOM05D002544 ORTHO05D007856 1.0e-216 757.3 665 58.0
FAN26G1528 Fragaria x ananassa HOM05D002544 ORTHO05D007856 3.7e-211 738.8 669 59.0
AUR62037665 Chenopodium quinoa HOM05D002544 ORTHO05D007856 3.4e-209 732.3 671 57.1
PGSC0003DMG400013310 Solanum tuberosum HOM05D002544 ORTHO05D007856 4.7e-206 721.8 514 70.0
unitig_748.g8462 Utricularia gibba HOM05D002544 ORTHO05D007856 5.2e-197 691.8 675 56.0
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 1.8e-186 656.8 628 55.7
HPP92_026943 Vanilla planifolia HOM05D002544 ORTHO05D007856 5.4e-186 655.2 595 56.8
CARHR162460 Cardamine hirsuta HOM05D002544 ORTHO05D007856 1.0e-181 641.0 484 66.3
SMO115G0276 Selaginella moellendorffii HOM05D002544 ORTHO05D007856 1.3e-163 580.9 649 47.9
Mapoly0182s0008 Marchantia polymorpha HOM05D002544 ORTHO05D007856 3.7e-163 579.3 665 46.3
Hma1.2p1_0158F.1_g070020 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 1.1e-157 561.2 352 78.7
AagrBONN_evm.TU.Sc2ySwM_228.3612 Anthoceros agrestis HOM05D002544 ORTHO05D007856 1.1e-135 488.0 704 41.6
QL02p059469 Quercus lobata HOM05D002544 ORTHO05D007856 5.6e-127 459.1 311 73.6
Pp3c25_11440 Physcomitrium patens HOM05D002544 ORTHO05D007856 9.3e-122 441.8 561 45.5
Lj4C412G0 Lonicera japonica HOM05D002544 ORTHO05D007856 9.7e-111 405.2 650 41.1
SEGI_34556 Sequoiadendron giganteum HOM05D002544 ORTHO05D007856 3.1e-93 347.1 310 54.8
Hund13079 Selenicereus undatus HOM05D002544 ORTHO05D007856 9.1e-93 345.5 355 53.0
HPP92_021312 Vanilla planifolia HOM05D002544 ORTHO05D007856 3.1e-77 293.9 239 63.6
Cre06.g294400 Chlamydomonas reinhardtii HOM05D002544 ORTHO05D007856 1.5e-74 285.0 658 32.8
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 1.6e-68 265.0 336 45.5
CARHR162470 Cardamine hirsuta HOM05D002544 ORTHO05D007856 2.3e-51 208.0 177 57.1
CBR_g26303 Chara braunii HOM05D002544 ORTHO05D000002 4.3e-50 203.8 345 35.7
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 6.2e-41 173.3 315 35.2
MCO14G034 Micromonas commoda HOM05D002544 ORTHO05D007856 1.4e-40 172.2 735 26.4
Zm00001eb289130 Zea mays HOM05D002544 ORTHO05D007856 1.9e-34 151.8 137 57.7
CBR_g37928 Chara braunii HOM05D000601 ORTHO05D000301 1.2e-28 132.5 150 48.7
Cc07_g13200 Coffea canephora HOM05D002544 ORTHO05D007856 3.9e-27 127.5 106 63.2
Zm00001eb340210 Zea mays HOM05D002544 ORTHO05D007856 1.1e-26 125.9 109 59.6
CBR_g26304 Chara braunii HOM05D002544 ORTHO05D007856 7.6e-23 113.2 115 55.7
Hma1.2p1_0594F.1_g185860 Hydrangea macrophylla HOM05D006828 ORTHO05D008312 6.0e-20 103.6 83 61.4
HPP92_026942 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.3e-19 102.4 84 58.3
Haze_22892 Corylus avellana HOM05D002544 ORTHO05D007856 1.6e-17 95.5 102 47.1
CSS0043407 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 1.5e-15 89.0 42 97.6
HPP92_021314 Vanilla planifolia HOM05D002544 ORTHO05D007856 2.6e-15 88.2 55 65.5
CSS0029470 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 3.4e-15 87.8 42 97.6
C04p40260 Brassica napus HOM05D002544 ORTHO05D007856 1.1e-13 82.8 62 61.3
BolC4t25605H Brassica oleracea HOM05D002544 ORTHO05D007856 1.1e-13 82.8 62 61.3
HPP92_021313 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.1e-13 82.8 67 56.7
FvH4_4g11392 Fragaria vesca HOM05D000005 ORTHO05D000012 1.6e-12 79.0 50 70.0
FAN02G2717 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.6e-12 79.0 50 70.0
FAN12G0356 Fragaria x ananassa HOM05D002544 ORTHO05D007856 4.6e-12 77.4 50 68.0
FAN02G1722 Fragaria x ananassa HOM05D002544 ORTHO05D007856 3.0e-11 74.7 50 68.0
Gohir.A10G100500 Gossypium hirsutum HOM05D002544 ORTHO05D033931 1.6e-09 68.9 42 73.8
QL02p059474 Quercus lobata HOM05D002544 ORTHO05D007856 2.4e-08 65.1 37 75.7


User provided reference genes

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