Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046309 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 6.2e-147 524.6 324 100.0
CSS0029852 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 5.1e-141 505.0 332 96.1
Dinv01810 Davidia involucrata HOM05D004645 ORTHO05D005693 5.1e-125 451.8 339 85.5
Actinidia33801 Actinidia chinensis HOM05D004645 ORTHO05D005693 7.4e-124 448.0 332 84.3
Thecc.05G223300 Theobroma cacao HOM05D004645 ORTHO05D005693 1.5e-116 423.7 329 80.2
Ciclev10031859m.g Citrus clementina HOM05D004645 ORTHO05D005693 4.8e-115 418.7 330 83.3
Duzib177G0889 Durio zibethinus HOM05D004645 ORTHO05D005693 4.8e-115 418.7 348 76.1
CiPaw.06G036400 Carya illinoinensis HOM05D004645 ORTHO05D005693 1.4e-114 417.2 328 81.4
Gohir.D03G055700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.8e-114 416.8 335 80.3
Gorai.003G058500 Gossypium raimondii HOM05D004645 ORTHO05D005693 4.1e-114 415.6 338 79.6
Gohir.A02G114700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 9.1e-114 414.5 334 79.6
Hma1.2p1_0419F.1_g149550 Hydrangea macrophylla HOM05D004645 ORTHO05D005693 1.2e-113 414.1 357 75.9
Manes.09G130100 Manihot esculenta HOM05D004645 ORTHO05D005693 7.7e-113 411.4 329 74.8
CiPaw.05G212200 Carya illinoinensis HOM05D004645 ORTHO05D005693 8.5e-112 407.9 323 77.4
GSVIVG01024286001 Vitis vinifera HOM05D004645 ORTHO05D005693 1.1e-111 407.5 252 84.1
Atru.chr12.1851 Acer truncatum HOM05D004645 ORTHO05D005693 2.5e-111 406.4 329 81.5
CANSAT21G0324 Cannabis sativa HOM05D004645 ORTHO05D005693 3.2e-111 406.0 323 79.9
Gohir.A13G158000 Gossypium hirsutum HOM05D004645 ORTHO05D005693 5.5e-111 405.2 327 80.7
VMungo1127G1262 Vigna mungo HOM05D004645 ORTHO05D005693 2.7e-110 402.9 332 75.0
Glyma.12G014000 Glycine max HOM05D004645 ORTHO05D005693 2.3e-109 399.8 327 76.1
Glyma.09G223000 Glycine max HOM05D004645 ORTHO05D005693 5.2e-109 398.7 331 74.6
Phvul.011G016900 Phaseolus vulgaris HOM05D004645 ORTHO05D005693 1.5e-108 397.1 333 75.4
Lj1g0014871 Lotus japonicus HOM05D004645 ORTHO05D005693 2.6e-108 396.4 325 76.9
Medtr0004s0240 Medicago truncatula HOM05D004645 ORTHO05D005693 9.7e-108 394.4 324 77.8
TAR629G2315 Trochodendron aralioides HOM05D004645 ORTHO05D005693 1.3e-107 394.0 329 80.9
Manes.08G160200 Manihot esculenta HOM05D004645 ORTHO05D005693 2.8e-107 392.9 326 72.7
arahy.Tifrunner.gnm1.ann1.3IB4NC Arachis hypogaea HOM05D004645 ORTHO05D005693 4.8e-107 392.1 348 76.4
arahy.Tifrunner.gnm1.ann1.7F5N7U Arachis hypogaea HOM05D004645 ORTHO05D005693 4.8e-107 392.1 348 76.4
THA.LOC104820831 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 4.8e-107 392.1 326 69.6
AL6G28600 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 1.4e-106 390.6 324 72.5
BolC9t58802H Brassica oleracea HOM05D004645 ORTHO05D005693 1.4e-106 390.6 324 72.2
Duzib128G1942 Durio zibethinus HOM05D004645 ORTHO05D005693 1.8e-106 390.2 334 74.6
Gohir.D13G162500 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.8e-106 390.2 327 79.8
Prupe.2G329500 Prunus persica HOM05D004645 ORTHO05D005693 4.1e-106 389.0 332 78.6
BcaC04g18782 Brassica carinata HOM05D004645 ORTHO05D005693 5.3e-106 388.7 325 72.6
C09p59630 Brassica napus HOM05D004645 ORTHO05D005693 7.0e-106 388.3 324 71.9
AT5G17510 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 2.0e-105 386.7 326 71.5
Carub.0006s1574 Capsella rubella HOM05D004645 ORTHO05D005693 2.0e-105 386.7 330 71.2
Potri.013G076800 Populus trichocarpa HOM05D004645 ORTHO05D005693 2.0e-105 386.7 324 67.3
A10p21880 Brassica napus HOM05D004645 ORTHO05D005693 3.5e-105 386.0 330 73.0
BraA10t44247Z Brassica rapa HOM05D004645 ORTHO05D005693 3.5e-105 386.0 330 73.0
MD01G1239600 Malus domestica HOM05D004645 ORTHO05D005693 5.9e-105 385.2 338 71.6
TWI60G0474 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 5.9e-105 385.2 338 72.2
Hund09812 Selenicereus undatus HOM05D004645 ORTHO05D005693 7.7e-105 384.8 250 82.0
BcaB08g36765 Brassica carinata HOM05D004645 ORTHO05D005693 1.0e-104 384.4 328 72.3
Potri.019G042800 Populus trichocarpa HOM05D004645 ORTHO05D005693 1.0e-104 384.4 371 70.1
Aa31LG11G12160 Aethionema arabicum HOM05D004645 ORTHO05D005693 5.0e-104 382.1 326 70.6
RcHm_v2.0_Chr1g0384691 Rosa chinensis HOM05D004645 ORTHO05D005693 9.4e-103 377.9 326 75.2
Sp6g26710 Schrenkiella parvula HOM05D004645 ORTHO05D005693 9.4e-103 377.9 332 70.8
FAN10G3994 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.6e-102 377.1 327 72.2
FvH4_7g34300 Fragaria vesca HOM05D004645 ORTHO05D005693 4.7e-102 375.6 329 75.4
Lj5g0009502 Lotus japonicus HOM05D004645 ORTHO05D005693 1.8e-101 373.6 323 77.7
THA.LOC104802906 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 6.8e-101 371.7 327 63.9
PGR119G0624 Punica granatum HOM05D004645 ORTHO05D005693 8.8e-101 371.3 326 75.2
Nitab4.5_0009278g0030 Nicotiana tabacum HOM05D004645 ORTHO05D005693 4.4e-100 369.0 330 64.8
Peaxi162Scf00516g00425 Petunia axillaris HOM05D004645 ORTHO05D005693 2.8e-99 366.3 326 74.5
CAN.G732.33 Capsicum annuum HOM05D004645 ORTHO05D005693 4.8e-99 365.5 327 67.3
TAR633G2534 Trochodendron aralioides HOM05D004645 ORTHO05D005693 4.8e-99 365.5 244 80.3
Gorai.013G184600 Gossypium raimondii HOM05D004645 ORTHO05D005693 1.1e-98 364.4 329 75.4
Solyc03g097300.4 Solanum lycopersicum HOM05D004645 ORTHO05D005693 1.1e-98 364.4 328 66.2
Sopen03g028070 Solanum pennellii HOM05D004645 ORTHO05D005693 1.1e-98 364.4 328 66.2
PSO063G6220 Papaver somniferum HOM05D004645 ORTHO05D005693 1.4e-98 364.0 325 75.7
PSO782G2658 Papaver somniferum HOM05D004645 ORTHO05D005693 3.1e-98 362.8 324 75.6
ECA238G1292 Erigeron canadensis HOM05D004645 ORTHO05D005693 4.1e-98 362.5 253 75.9
PGSC0003DMG400026490 Solanum tuberosum HOM05D004645 ORTHO05D005693 4.1e-98 362.5 331 65.9
Lalb_Chr19g0140101 Lupinus albus HOM05D004645 ORTHO05D005693 2.0e-97 360.1 322 63.7
Oeu028988.1 Olea europaea HOM05D004645 ORTHO05D005693 5.9e-97 358.6 327 64.5
Cc02_g00050 Coffea canephora HOM05D004645 ORTHO05D005693 7.7e-97 358.2 330 66.4
HanXRQChr11g0333681 Helianthus annuus HOM05D004645 ORTHO05D005693 7.7e-97 358.2 326 63.5
FAN03G2055 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.3e-96 357.5 351 71.5
Nitab4.5_0000021g0850 Nicotiana tabacum HOM05D004645 ORTHO05D005693 1.7e-96 357.1 255 72.9
HanXRQChr14g0434641 Helianthus annuus HOM05D004645 ORTHO05D005693 6.5e-96 355.1 324 63.9
Lalb_Chr03g0037841 Lupinus albus HOM05D004645 ORTHO05D005693 1.5e-95 354.0 327 70.3
ClCG09G013170 Citrullus lanatus HOM05D004645 ORTHO05D005693 1.9e-95 353.6 332 73.5
MSTRG.26920 Avicennia marina HOM05D004645 ORTHO05D005693 2.5e-95 353.2 324 61.7
Lj3C883G6 Lonicera japonica HOM05D000507 ORTHO05D000416 7.2e-95 351.7 251 77.7
TWI32G1082 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 7.2e-95 351.7 325 74.2
Sed0013778 Sechium edule HOM05D004645 ORTHO05D005693 2.1e-94 350.1 326 74.2
CARHR195680 Cardamine hirsuta HOM05D004645 ORTHO05D005693 2.7e-94 349.7 328 69.2
MELO3C014340.2 Cucumis melo HOM05D004645 ORTHO05D005693 2.7e-94 349.7 330 74.2
Lsat_1_v5_gn_8_3080 Lactuca sativa HOM05D004645 ORTHO05D005693 3.6e-94 349.4 326 64.7
TPR.G9835 Trifolium pratense HOM05D004645 ORTHO05D005693 6.1e-94 348.6 325 76.9
Thhalv10013879m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 1.0e-93 347.8 326 68.4
Aqoxy5G00549 Aquilegia oxysepala HOM05D004645 ORTHO05D005693 7.5e-92 341.7 336 69.9
Sabra19G0053400 Salix brachista HOM05D004645 ORTHO05D005693 1.7e-91 340.5 289 65.1
Migut.L00703 Erythranthe guttata HOM05D004645 ORTHO05D005693 2.8e-91 339.7 346 60.4
Oeu027899.1 Olea europaea HOM05D004645 ORTHO05D005693 2.8e-91 339.7 326 65.6
COL.COLO4_15124 Corchorus olitorius HOM05D004645 ORTHO05D005693 1.4e-90 337.4 218 81.7
Haze_00365 Corylus avellana HOM05D004645 ORTHO05D005693 1.2e-89 334.3 217 83.9
QL09p020526 Quercus lobata HOM05D004645 ORTHO05D005693 1.2e-89 334.3 216 84.7
CsaV3_6G036830 Cucumis sativus L. HOM05D004645 ORTHO05D005693 1.0e-88 331.3 253 71.5
vmacro06368 Vaccinium macrocarpon HOM05D004645 ORTHO05D005693 1.0e-85 321.2 231 79.2
CDE04G1041 Ceratophyllum demersum HOM05D004645 ORTHO05D005693 1.5e-84 317.4 327 59.9
AUR62028214 Chenopodium quinoa HOM05D004645 ORTHO05D005693 2.9e-83 313.2 255 71.0
Ca_19601_v3 Cicer arietinum L. HOM05D004645 ORTHO05D005693 4.9e-83 312.4 218 78.0
Rhsim03G0224700 Rhododendron simsii HOM05D004645 ORTHO05D005693 1.3e-80 304.3 340 68.5
unitig_92.g28227 Utricularia gibba HOM05D004645 ORTHO05D005693 2.9e-80 303.1 243 66.3
HanXRQChr05g0156891 Helianthus annuus HOM05D004645 ORTHO05D005693 1.9e-79 300.4 247 68.0
EL10Ac3g05041 Beta vulgaris HOM05D004645 ORTHO05D005693 9.5e-79 298.1 406 53.2
SGA_v2.0_scaffold18G08211 Striga asiatica HOM05D004645 ORTHO05D005693 1.0e-77 294.7 344 57.0
Thhalv10020936m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 2.3e-77 293.5 357 62.2
DCAR_010525 Daucus carota HOM05D004645 ORTHO05D005693 3.1e-77 293.1 229 71.2
AUR62002096 Chenopodium quinoa HOM05D004645 ORTHO05D005693 8.9e-77 291.6 254 67.7
SHI15009 Sapria himalayana HOM05D004645 ORTHO05D005693 2.6e-76 290.0 335 54.3
ECA233G1188 Erigeron canadensis HOM05D004645 ORTHO05D005693 1.7e-75 287.3 243 65.4
Cfa016080 Carpinus fangiana HOM05D004645 ORTHO05D005693 1.2e-73 281.2 191 81.2
AL3G13140 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 7.8e-73 278.5 331 58.0
DCAR_014580 Daucus carota HOM05D004645 ORTHO05D005693 1.0e-72 278.1 325 53.2
Os12g0465700 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 1.7e-72 277.3 327 53.5
Aa31LG5G13980 Aethionema arabicum HOM05D000507 ORTHO05D000416 2.3e-72 276.9 260 60.4
Lj3g0007707 Lotus japonicus HOM05D004645 ORTHO05D005693 1.2e-70 271.2 208 74.0
ATR0582G008 Amborella trichopoda HOM05D004645 ORTHO05D005693 2.8e-70 270.0 327 52.0
Ah.04g156130 Amaranthus hybridus HOM05D004645 ORTHO05D005693 3.6e-70 269.6 341 59.8
Sp3g02460 Schrenkiella parvula HOM05D004645 ORTHO05D005693 6.2e-70 268.9 340 56.8
HPP92_006448 Vanilla planifolia HOM05D004645 ORTHO05D005693 8.1e-70 268.5 338 62.4
Sc08g0005180 Simmondsia chinensis HOM05D004645 ORTHO05D005693 1.1e-69 268.1 220 73.6
AT3G03460 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 3.7e-67 259.6 335 56.1
BNapus_Darmor_BZH_scaffold_162p00170 Brassica napus HOM05D004645 ORTHO05D005693 6.4e-67 258.8 335 57.6
BolC1t05829H Brassica oleracea HOM05D004645 ORTHO05D005693 6.4e-67 258.8 335 57.6
Carub.0003s0260 Capsella rubella HOM05D004645 ORTHO05D005693 1.4e-66 257.7 345 55.7
A06p26400 Brassica napus HOM05D004645 ORTHO05D005693 9.5e-63 245.0 265 58.1
BNapus_Darmor_BZH_scaffold_78p00150 Brassica napus HOM05D004645 ORTHO05D005693 9.5e-63 245.0 265 58.1
BraA01t04578Z Brassica rapa HOM05D004645 ORTHO05D005693 2.1e-62 243.8 265 58.1
BcaC09g47748 Brassica carinata HOM05D004645 ORTHO05D005693 1.6e-57 227.6 329 52.9
SEGI_39287 Sequoiadendron giganteum HOM05D004645 ORTHO05D005693 6.2e-54 215.7 262 50.0
HPP92_027983 Vanilla planifolia HOM05D004645 ORTHO05D005693 8.9e-53 211.8 212 72.6
TAR636G0353 Trochodendron aralioides HOM05D004645 ORTHO05D005693 1.4e-42 177.9 126 80.2
Psat7g154680 Pisum sativum HOM05D004645 ORTHO05D005693 5.4e-42 176.0 149 68.5
FAN01G0394 Fragaria x ananassa HOM05D004645 ORTHO05D005693 2.7e-41 173.7 101 90.1
CARHR077490 Cardamine hirsuta HOM05D004645 ORTHO05D005693 4.0e-37 159.8 221 51.1
Mapoly0012s0180 Marchantia polymorpha HOM05D004645 ORTHO05D005693 5.3e-29 132.9 148 43.9
HPP92_028759 Vanilla planifolia HOM05D004645 ORTHO05D005693 6.9e-29 132.5 124 62.1
AagrBONN_evm.TU.Sc2ySwM_228.1766 Anthoceros agrestis HOM05D004645 ORTHO05D005693 1.7e-27 127.9 151 46.4
Pp3c11_2710 Physcomitrium patens HOM05D004645 ORTHO05D005693 9.3e-26 122.1 132 46.2
Actinidia04560 Actinidia chinensis HOM05D004645 ORTHO05D005693 3.9e-24 116.7 114 70.2
Dinv17242 Davidia involucrata HOM05D004645 ORTHO05D005693 7.4e-23 112.5 115 86.1
Os04g0393100 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 1.1e-21 108.6 121 46.3
CBR_g4003 Chara braunii HOM05D004645 ORTHO05D005693 1.8e-21 107.8 153 39.2
Os04g0393200 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 1.0e-19 102.1 128 43.8
Zm00001eb421230 Zea mays HOM05D004645 ORTHO05D005693 1.3e-19 101.7 130 40.8
Psat0s904g0040 Pisum sativum HOM05D004645 ORTHO05D005693 2.5e-18 97.4 107 57.9
Cpa.g.c34419 Carica papaya HOM05D004645 ORTHO05D005693 2.3e-16 90.9 124 73.4
FAN01G2860 Fragaria x ananassa HOM05D004645 ORTHO05D005693 3.9e-16 90.1 113 77.0
Sabra13G0065800 Salix brachista HOM05D004645 ORTHO05D005693 6.7e-16 89.4 113 52.2
Haze_00364 Corylus avellana HOM05D004645 ORTHO05D005693 8.2e-14 82.4 117 76.1
QL09p020516 Quercus lobata HOM05D004645 ORTHO05D005693 1.0e-11 75.5 35 91.4
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 1.3e-11 75.1 49 67.3
ECA075G0001 Erigeron canadensis HOM05D004645 ORTHO05D005693 4.6e-09 66.6 36 83.3
HPP92_027982 Vanilla planifolia HOM05D004645 ORTHO05D005693 2.0e-07 61.2 92 48.9
Oeu057736.1 Olea europaea HOM05D004645 ORTHO05D005693 2.2e-06 57.8 120 38.3
Zm00001eb132960 Zea mays HOM05D004645 ORTHO05D049646 8.2e-06 55.8 109 68.8


User provided reference genes

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