Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004581 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 3.0e-264 914.8 531 100.0
CSS0046279 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 3.0e-264 914.8 531 100.0
vmacro10365 Vaccinium macrocarpon HOM05D006063 ORTHO05D000023 4.6e-156 555.4 536 60.6
Rhsim09G0137100 Rhododendron simsii HOM05D006063 ORTHO05D000023 7.8e-148 528.1 575 56.2
Actinidia34754 Actinidia chinensis HOM05D006063 ORTHO05D000023 5.1e-147 525.4 531 59.5
TAR362G1155 Trochodendron aralioides HOM05D006063 ORTHO05D000023 1.4e-107 394.4 549 47.2
Oeu010183.1 Olea europaea HOM05D006063 ORTHO05D000023 2.3e-91 340.5 531 42.4
Nitab4.5_0000504g0070 Nicotiana tabacum HOM05D006063 ORTHO05D000023 9.1e-88 328.6 523 43.2
Nitab4.5_0004201g0010 Nicotiana tabacum HOM05D006063 ORTHO05D000023 1.7e-86 324.3 523 43.0
MD04G1235500 Malus domestica HOM05D006063 ORTHO05D000023 2.2e-86 323.9 537 41.5
Ciclev10019009m.g Citrus clementina HOM05D006063 ORTHO05D000023 3.2e-85 320.1 528 42.6
Sopen04g021710 Solanum pennellii HOM05D006063 ORTHO05D000023 2.1e-84 317.4 522 42.9
PGSC0003DMG400015112 Solanum tuberosum HOM05D006063 ORTHO05D000023 5.2e-83 312.8 522 43.1
FAN09G4822 Fragaria x ananassa HOM05D006063 ORTHO05D000023 1.5e-82 311.2 533 42.2
Solyc04g050760.4 Solanum lycopersicum HOM05D006063 ORTHO05D000023 1.5e-82 311.2 525 42.3
CAN.G4.18 Capsicum annuum HOM05D006063 ORTHO05D000023 2.6e-82 310.5 523 43.6
Manes.09G145100 Manihot esculenta HOM05D006063 ORTHO05D000023 1.7e-81 307.8 543 41.1
TWI34G0066 Tripterygium wilfordii HOM05D006063 ORTHO05D000023 6.3e-81 305.8 550 42.0
FvH4_6g01260 Fragaria vesca HOM05D006063 ORTHO05D000023 8.3e-81 305.4 538 41.8
Potri.019G029400 Populus trichocarpa HOM05D006063 ORTHO05D000023 8.3e-81 305.4 535 41.9
Thecc.05G261400 Theobroma cacao HOM05D006063 ORTHO05D000023 1.1e-80 305.1 558 40.0
Cc09_g03150 Coffea canephora HOM05D006063 ORTHO05D000023 4.1e-80 303.1 434 43.8
PSO063G1700 Papaver somniferum HOM05D006063 ORTHO05D000023 4.1e-80 303.1 530 41.5
FAN05G0856 Fragaria x ananassa HOM05D006063 ORTHO05D000023 5.4e-80 302.8 538 41.6
Aqoxy2G04022 Aquilegia oxysepala HOM05D006063 ORTHO05D000023 7.0e-80 302.4 535 41.1
Hund07147 Selenicereus undatus HOM05D006063 ORTHO05D000023 2.2e-78 297.4 549 38.3
FAN05G5389 Fragaria x ananassa HOM05D006063 ORTHO05D000023 8.5e-78 295.4 538 40.7
FAN02G3689 Fragaria x ananassa HOM05D006063 ORTHO05D000023 3.2e-77 293.5 536 41.0
MSTRG.9222 Avicennia marina HOM05D006063 ORTHO05D000023 2.1e-76 290.8 579 38.3
Sabra19G0036100 Salix brachista HOM05D006063 ORTHO05D000023 2.1e-76 290.8 530 40.6
Sabra19G0039200 Salix brachista HOM05D006063 ORTHO05D000023 2.8e-76 290.4 530 40.6
Gorai.013G118800 Gossypium raimondii HOM05D006063 ORTHO05D000023 1.8e-75 287.7 548 37.8
Gohir.D13G106000 Gossypium hirsutum HOM05D006063 ORTHO05D000023 2.3e-75 287.3 548 37.6
Sed0026121 Sechium edule HOM05D006063 ORTHO05D000023 2.3e-75 287.3 464 42.2
EL10Ac4g09796 Beta vulgaris HOM05D006063 ORTHO05D000023 1.2e-74 285.0 549 39.9
Prupe.6G355400 Prunus persica HOM05D006063 ORTHO05D000023 1.2e-74 285.0 531 40.1
Dinv03784 Davidia involucrata HOM05D006063 ORTHO05D000023 1.5e-74 284.6 280 56.8
MELO3C010119.2 Cucumis melo HOM05D006063 ORTHO05D000023 2.6e-74 283.9 541 39.6
Sc16g0010060 Simmondsia chinensis HOM05D006063 ORTHO05D000023 4.4e-74 283.1 550 40.2
PSO017G2613 Papaver somniferum HOM05D006063 ORTHO05D000023 1.3e-73 281.6 543 39.4
CANSAT54G1152 Cannabis sativa HOM05D006063 ORTHO05D000023 6.3e-73 279.3 539 40.1
Eucgr.H04160 Eucalyptus grandis HOM05D006063 ORTHO05D000023 5.9e-71 272.7 531 39.5
Migut.F02045 Erythranthe guttata HOM05D006063 ORTHO05D000023 7.8e-71 272.3 547 37.3
Lj2A50T27 Lonicera japonica HOM05D006063 ORTHO05D000023 2.3e-70 270.8 309 51.5
AUR62005299 Chenopodium quinoa HOM05D006063 ORTHO05D000765 8.6e-70 268.9 551 36.8
Gohir.A13G102800 Gossypium hirsutum HOM05D006063 ORTHO05D000023 8.6e-70 268.9 548 36.9
Cpa.g.sc51.61 Carica papaya HOM05D006063 ORTHO05D000023 2.8e-68 263.8 357 45.9
ClCG03G011330 Citrullus lanatus HOM05D006063 ORTHO05D000023 2.3e-67 260.8 608 35.2
SGA_v2.0_scaffold62G21476 Striga asiatica HOM05D006063 ORTHO05D000023 3.0e-67 260.4 446 38.8
CsaV3_1G044890 Cucumis sativus L. HOM05D006063 ORTHO05D000023 3.4e-66 256.9 543 36.8
ATR0618G015 Amborella trichopoda HOM05D006063 ORTHO05D000023 1.7e-65 254.6 563 37.1
SalBow1G1068 Salvia bowleyana HOM05D006063 ORTHO05D000023 1.8e-64 251.1 582 35.9
Lsat_1_v5_gn_9_46040 Lactuca sativa HOM05D006063 ORTHO05D000023 2.4e-64 250.8 468 40.2
Peaxi162Scf00071g01413 Petunia axillaris HOM05D006063 ORTHO05D000023 5.4e-64 249.6 519 38.9
RcHm_v2.0_Chr3g0448821 Rosa chinensis HOM05D006063 ORTHO05D000023 9.2e-64 248.8 439 42.1
SalBow1G3325 Salvia bowleyana HOM05D006063 ORTHO05D000023 4.6e-63 246.5 491 38.5
MBI07_g04744_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 7.8e-63 245.7 558 36.9
MBI18_g19284_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 7.8e-63 245.7 391 42.2
Lalb_Chr21g0311331 Lupinus albus HOM05D006063 ORTHO05D000023 2.3e-62 244.2 531 36.5
Lj3g0014127 Lotus japonicus HOM05D006063 ORTHO05D000023 8.6e-62 242.3 522 35.8
Carub.0003s0342 Capsella rubella HOM05D006063 ORTHO05D000023 1.5e-61 241.5 443 38.6
HanXRQChr15g0491401 Helianthus annuus HOM05D006063 ORTHO05D000023 1.6e-60 238.0 520 36.3
AL3G14090 Arabidopsis lyrata HOM05D006063 ORTHO05D000023 2.1e-60 237.7 439 38.5
Glyma.10G169000 Glycine max HOM05D006063 ORTHO05D000023 2.1e-60 237.7 533 35.6
VMungo0720G1344 Vigna mungo HOM05D006063 ORTHO05D000023 2.1e-60 237.7 523 35.6
MBI18_g46979_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 2.8e-60 237.3 571 35.0
Phvul.L001648 Phaseolus vulgaris HOM05D006063 ORTHO05D000023 1.0e-59 235.3 530 34.5
THA.LOC104820746 Tarenaya hassleriana HOM05D006063 ORTHO05D000023 1.0e-59 235.3 433 38.6
Aa31LG5G14700 Aethionema arabicum HOM05D006063 ORTHO05D000023 1.3e-57 228.4 540 35.2
BcaB04g19349 Brassica carinata HOM05D006063 ORTHO05D000023 1.7e-57 228.0 517 36.0
ECA232G4499 Erigeron canadensis HOM05D006063 ORTHO05D000023 5.4e-56 223.0 496 37.7
Thhalv10020148m.g Eutrema salsugineum HOM05D006063 ORTHO05D000023 5.4e-56 223.0 468 36.5
CARHR078300 Cardamine hirsuta HOM05D006063 ORTHO05D000023 9.2e-56 222.2 529 34.6
Sp3g03130 Schrenkiella parvula HOM05D006063 ORTHO05D000023 1.2e-55 221.9 525 35.6
AT3G04160 Arabidopsis thaliana HOM05D006063 ORTHO05D000023 2.0e-55 221.1 539 35.6
QL07p027196 Quercus lobata HOM05D006063 ORTHO05D000023 7.8e-55 219.2 638 33.4
GSVIVG01026370001 Vitis vinifera HOM05D006063 ORTHO05D000023 1.3e-54 218.4 336 46.7
CiPaw.07G075500 Carya illinoinensis HOM05D006063 ORTHO05D000023 2.3e-54 217.6 323 45.8
Ca_09979_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 6.2e-52 209.5 543 33.5
Ca_09995_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 6.2e-52 209.5 543 33.5
C03p40730 Brassica napus HOM05D006063 ORTHO05D000023 1.4e-51 208.4 514 34.2
Medtr1g079470 Medicago truncatula HOM05D006063 ORTHO05D000023 1.7e-49 201.4 532 33.5
Haze_04487 Corylus avellana HOM05D006063 ORTHO05D000023 1.9e-48 198.0 618 32.2
arahy.Tifrunner.gnm1.ann1.JVQ2Z4 Arachis hypogaea HOM05D006063 ORTHO05D000023 2.4e-48 197.6 533 32.6
COL.COLO4_20542 Corchorus olitorius HOM05D006063 ORTHO05D000023 3.2e-48 197.2 341 42.2
arahy.Tifrunner.gnm1.ann1.2N7XA4 Arachis hypogaea HOM05D006063 ORTHO05D000023 1.2e-47 195.3 534 32.6
BraA03t12527Z Brassica rapa HOM05D006063 ORTHO05D000023 3.5e-47 193.7 515 33.8
A03p33520 Brassica napus HOM05D006063 ORTHO05D000023 8.6e-46 189.1 515 33.6
FvH4_5g38930 Fragaria vesca HOM05D006063 ORTHO05D000023 1.9e-45 188.0 303 44.9
BolC3t16339H Brassica oleracea HOM05D006063 ORTHO05D000023 2.5e-45 187.6 515 32.6
Os04g0349401 Oryza sativa ssp. japonica HOM05D006063 ORTHO05D000023 2.5e-45 187.6 351 37.3
BcaC01g04385 Brassica carinata HOM05D006063 ORTHO05D000023 5.6e-45 186.4 516 32.8
Zm00001eb086400 Zea mays HOM05D006063 ORTHO05D000023 1.2e-44 185.3 339 38.3
SHI14775 Sapria himalayana HOM05D006063 ORTHO05D000023 8.1e-44 182.6 320 40.3
Atru.chr2.1231 Acer truncatum HOM05D006063 ORTHO05D000023 2.0e-42 177.9 184 58.2
Hma1.2p1_0153F.1_g067880 Hydrangea macrophylla HOM05D006063 ORTHO05D000023 9.9e-42 175.6 241 48.1
A05p43190 Brassica napus HOM05D006063 ORTHO05D000023 6.4e-41 172.9 332 34.6
CDE05G3203 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 3.2e-40 170.6 338 40.8
HPP92_006233 Vanilla planifolia HOM05D006063 ORTHO05D000023 9.2e-40 169.1 337 41.5
Psat6g141160 Pisum sativum HOM05D006063 ORTHO05D000023 1.3e-38 165.2 432 34.5
Dinv03778 Davidia involucrata HOM05D006063 ORTHO05D045100 5.6e-37 159.8 252 46.4
AagrBONN_evm.TU.Sc2ySwM_362.520 Anthoceros agrestis HOM05D006063 ORTHO05D000023 1.5e-29 135.2 338 30.5
Pp3c17_4760 Physcomitrium patens HOM05D006063 ORTHO05D000023 1.6e-28 131.7 424 29.5
CsaV3_1G044530 Cucumis sativus L. HOM05D006063 ORTHO05D000023 1.1e-27 129.0 163 49.1
SMO351G0027 Selaginella moellendorffii HOM05D006063 ORTHO05D000023 4.0e-27 127.1 418 29.2
Atru.chr2.1232 Acer truncatum HOM05D006063 ORTHO05D000023 4.6e-23 113.6 123 49.6
Mapoly0001s0430 Marchantia polymorpha HOM05D006063 ORTHO05D000023 7.9e-23 112.8 588 26.7
SEGI_40887 Sequoiadendron giganteum HOM05D006063 ORTHO05D000023 3.7e-20 104.0 273 34.8
BraA05t23062Z Brassica rapa HOM05D006063 ORTHO05D000023 3.1e-19 100.9 110 52.7
Hma1.2p1_0153F.1_g067860 Hydrangea macrophylla HOM05D006063 ORTHO05D045100 4.5e-18 97.1 207 41.5
DCAR_005531 Daucus carota HOM05D006063 ORTHO05D000023 6.4e-17 93.2 106 41.5
A05p43200 Brassica napus HOM05D000005 ORTHO05D000449 8.4e-17 92.8 276 33.3
Cpa.g.sc51.65 Carica papaya HOM05D006063 ORTHO05D000023 5.5e-16 90.1 152 37.5
TPR.G10281 Trifolium pratense HOM05D006063 ORTHO05D000023 1.8e-11 75.1 241 31.1
FAN08G2149 Fragaria x ananassa HOM05D006063 ORTHO05D000023 3.8e-09 67.4 224 32.1
DCAR_005530 Daucus carota HOM05D006063 ORTHO05D000023 3.2e-08 64.3 221 34.4
Dinv03782 Davidia involucrata HOM05D006063 ORTHO05D045148 5.5e-08 63.5 40 80.0
BcaC05g30213 Brassica carinata HOM05D006063 ORTHO05D000023 7.1e-08 63.2 48 68.8
CDE05G2869 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 4.6e-07 60.5 45 62.2
TPR.G14651 Trifolium pratense HOM05D006063 ORTHO05D000023 3.9e-06 57.4 231 30.3


User provided reference genes

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