Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046270 Camellia sinensis var. sinensis HOM05D007237 ORTHO05D008854 1.4e-84 316.2 156 100.0
Duzib138G0953 Durio zibethinus HOM05D007237 ORTHO05D008854 2.0e-43 179.5 103 80.6
Manes.07G003400 Manihot esculenta HOM05D007237 ORTHO05D008854 1.0e-42 177.2 104 76.9
Thecc.01G414400 Theobroma cacao HOM05D007237 ORTHO05D008854 6.5e-42 174.5 103 77.7
Manes.10G147700 Manihot esculenta HOM05D007237 ORTHO05D008854 1.1e-41 173.7 98 78.6
Dinv43468 Davidia involucrata HOM05D007237 ORTHO05D008854 4.2e-41 171.8 104 76.0
TWI09G0768 Tripterygium wilfordii HOM05D007237 ORTHO05D008854 4.2e-41 171.8 104 75.0
Gorai.008G105400 Gossypium raimondii HOM05D007237 ORTHO05D008854 5.5e-41 171.4 106 73.6
CiPaw.13G002300 Carya illinoinensis HOM05D007237 ORTHO05D008854 9.3e-41 170.6 106 72.6
TWI53G0305 Tripterygium wilfordii HOM05D007237 ORTHO05D008854 1.6e-40 169.9 104 74.0
Hma1.2p1_0845F.1_g227580 Hydrangea macrophylla HOM05D007237 ORTHO05D008854 2.7e-40 169.1 103 70.9
MD02G1316200 Malus domestica HOM05D007237 ORTHO05D008854 2.7e-40 169.1 96 78.1
Gohir.A12G094200 Gossypium hirsutum HOM05D007237 ORTHO05D008854 3.5e-40 168.7 103 73.8
MD07G1005700 Malus domestica HOM05D007237 ORTHO05D008854 6.0e-40 167.9 99 75.8
Sc11g0009340 Simmondsia chinensis HOM05D007237 ORTHO05D008854 6.0e-40 167.9 104 72.1
Gohir.D08G166900 Gossypium hirsutum HOM05D007237 ORTHO05D008854 2.3e-39 166.0 102 72.5
Gorai.004G174300 Gossypium raimondii HOM05D007237 ORTHO05D008854 2.3e-39 166.0 102 72.5
Gohir.A08G146000 Gossypium hirsutum HOM05D007237 ORTHO05D008854 6.7e-39 164.5 102 72.5
QL04p004894 Quercus lobata HOM05D007237 ORTHO05D008854 6.7e-39 164.5 106 71.7
Ciclev10033078m.g Citrus clementina HOM05D007237 ORTHO05D008854 8.7e-39 164.1 103 71.8
Atru.chr11.2633 Acer truncatum HOM05D007237 ORTHO05D008854 2.5e-38 162.5 100 72.0
MSTRG.28082 Avicennia marina HOM05D007237 ORTHO05D008854 2.5e-38 162.5 105 70.5
Actinidia31685 Actinidia chinensis HOM05D007237 ORTHO05D008854 3.3e-38 162.2 107 73.8
Glyma.15G271600 Glycine max HOM05D007237 ORTHO05D008854 4.3e-38 161.8 103 71.8
vmacro13649 Vaccinium macrocarpon HOM05D000102 ORTHO05D000138 4.3e-38 161.8 97 76.3
Eucgr.J01258 Eucalyptus grandis HOM05D007237 ORTHO05D008854 5.7e-38 161.4 106 67.9
Prupe.2G008100 Prunus persica HOM05D007237 ORTHO05D008854 7.4e-38 161.0 102 68.6
arahy.Tifrunner.gnm1.ann1.CQ9Q2Z Arachis hypogaea HOM05D007237 ORTHO05D008854 2.2e-37 159.5 105 73.3
Oeu036184.1 Olea europaea HOM05D007237 ORTHO05D008854 3.7e-37 158.7 99 73.7
CAN.G1393.1 Capsicum annuum HOM05D007237 ORTHO05D008854 4.8e-37 158.3 113 62.8
Glyma.08G152200 Glycine max HOM05D007237 ORTHO05D008854 6.3e-37 157.9 104 69.2
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 8.2e-37 157.5 90 80.0
Potri.001G271000 Populus trichocarpa HOM05D007237 ORTHO05D008854 8.2e-37 157.5 104 67.3
Sabra16G0166400 Salix brachista HOM05D007237 ORTHO05D008854 1.1e-36 157.1 103 68.9
ECA234G1833 Erigeron canadensis HOM05D007237 ORTHO05D008854 1.4e-36 156.8 101 73.3
FvH4_7g00620 Fragaria vesca HOM05D007237 ORTHO05D008854 1.4e-36 156.8 98 68.4
arahy.Tifrunner.gnm1.ann1.PP9VDR Arachis hypogaea HOM05D007237 ORTHO05D008854 1.8e-36 156.4 105 71.4
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 4.1e-36 155.2 100 69.0
Oeu036183.1 Olea europaea HOM05D000288 ORTHO05D008854 4.1e-36 155.2 99 72.7
SalBow4G0796 Salvia bowleyana HOM05D007237 ORTHO05D008854 6.9e-36 154.5 93 73.1
Psat5g205480 Pisum sativum HOM05D007237 ORTHO05D008854 1.2e-35 153.7 98 67.3
HanXRQChr17g0563491 Helianthus annuus HOM05D007237 ORTHO05D008854 1.5e-35 153.3 101 67.3
HanXRQChr11g0330541 Helianthus annuus HOM05D007237 ORTHO05D008854 2.0e-35 152.9 97 74.2
Lalb_Chr03g0033911 Lupinus albus HOM05D007237 ORTHO05D008854 2.0e-35 152.9 105 68.6
TPR.G12234 Trifolium pratense HOM05D007237 ORTHO05D008854 2.0e-35 152.9 102 72.5
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.6e-35 152.5 97 68.0
Lsat_1_v5_gn_4_46201 Lactuca sativa HOM05D007237 ORTHO05D008854 2.6e-35 152.5 94 73.4
PGR044G2203 Punica granatum HOM05D007237 ORTHO05D008854 2.6e-35 152.5 101 67.3
Aqoxy2G00108 Aquilegia oxysepala HOM05D007237 ORTHO05D008854 4.5e-35 151.8 98 66.3
Peaxi162Scf00428g01024 Petunia axillaris HOM05D007237 ORTHO05D008854 4.5e-35 151.8 94 71.3
Prupe.2G008300 Prunus persica HOM05D007237 ORTHO05D008854 4.5e-35 151.8 95 69.5
Medtr3g027590 Medicago truncatula HOM05D007237 ORTHO05D008854 7.7e-35 151.0 121 60.3
RcHm_v2.0_Chr1g0314811 Rosa chinensis HOM05D007237 ORTHO05D008854 1.0e-34 150.6 98 66.3
CANSAT21G0694 Cannabis sativa HOM05D007237 ORTHO05D008854 1.3e-34 150.2 78 83.3
Cc02_g27480 Coffea canephora HOM05D007237 ORTHO05D008854 2.9e-34 149.1 101 72.3
Lalb_Chr20g0108101 Lupinus albus HOM05D007237 ORTHO05D008854 2.9e-34 149.1 104 65.4
HanXRQChr16g0519611 Helianthus annuus HOM05D007237 ORTHO05D008854 3.8e-34 148.7 96 71.9
ATR0605G218 Amborella trichopoda HOM05D007237 ORTHO05D008854 6.5e-34 147.9 93 68.8
arahy.Tifrunner.gnm1.ann1.1X74KR Arachis hypogaea HOM05D007237 ORTHO05D008854 1.1e-33 147.1 103 66.0
Migut.O00928 Erythranthe guttata HOM05D007237 ORTHO05D008854 1.1e-33 147.1 100 67.0
Lj3g0027771 Lotus japonicus HOM05D007237 ORTHO05D008854 1.9e-33 146.4 104 67.3
SGA_v2.0_scaffold4G02250 Striga asiatica HOM05D000288 ORTHO05D000173 1.9e-33 146.4 99 63.6
Solyc01g086830.4 Solanum lycopersicum HOM05D007237 ORTHO05D008854 3.2e-33 145.6 100 66.0
Ah.12g061430 Amaranthus hybridus HOM05D000016 ORTHO05D000433 5.5e-33 144.8 94 66.0
Sopen01g033840 Solanum pennellii HOM05D007237 ORTHO05D008854 5.5e-33 144.8 101 66.3
SGA_v2.0_scaffold95G28787 Striga asiatica HOM05D000288 ORTHO05D000173 5.5e-33 144.8 90 70.0
MBI04_g14266_MAGBIO Magnolia biondii HOM05D007237 ORTHO05D008854 2.1e-32 142.9 103 64.1
Sed0015658 Sechium edule HOM05D007237 ORTHO05D008854 6.1e-32 141.4 103 60.2
Ah.12g052640 Amaranthus hybridus HOM05D000491 ORTHO05D008854 7.9e-32 141.0 96 62.5
EL10Ac2g04307 Beta vulgaris HOM05D007237 ORTHO05D008854 1.4e-31 140.2 87 70.1
unitig_8.g3625 Utricularia gibba HOM05D007237 ORTHO05D008854 1.8e-31 139.8 104 62.5
Haze_03241 Corylus avellana HOM05D007237 ORTHO05D008854 2.3e-31 139.4 83 77.1
PSO017G6688 Papaver somniferum HOM05D007237 ORTHO05D008854 2.3e-31 139.4 93 66.7
Sp5g10150 Schrenkiella parvula HOM05D007237 ORTHO05D008854 4.3e-30 135.2 109 56.9
THA.LOC104825138 Tarenaya hassleriana HOM05D007237 ORTHO05D008854 7.4e-30 134.4 83 66.3
Phvul.005G037300 Phaseolus vulgaris HOM05D007237 ORTHO05D008854 9.7e-30 134.0 98 65.3
Carub.0003s0700 Capsella rubella HOM05D007237 ORTHO05D008854 2.2e-29 132.9 101 62.4
AL3G18770 Arabidopsis lyrata HOM05D007237 ORTHO05D008854 2.8e-29 132.5 96 63.5
Carub.0005s1847 Capsella rubella HOM05D007237 ORTHO05D008854 2.8e-29 132.5 81 71.6
BcaC06g33382 Brassica carinata HOM05D007237 ORTHO05D008854 3.7e-29 132.1 74 74.3
A03p48720 Brassica napus HOM05D007237 ORTHO05D008854 3.7e-29 132.1 74 74.3
C07p46810 Brassica napus HOM05D007237 ORTHO05D008854 3.7e-29 132.1 74 74.3
BolC7t45198H Brassica oleracea HOM05D007237 ORTHO05D008854 3.7e-29 132.1 74 74.3
BraA03t13972Z Brassica rapa HOM05D007237 ORTHO05D008854 3.7e-29 132.1 74 74.3
Aa31LG10G7220 Aethionema arabicum HOM05D007237 ORTHO05D008854 6.3e-29 131.3 74 75.7
AT3G07450 Arabidopsis thaliana HOM05D007237 ORTHO05D008854 6.3e-29 131.3 93 64.5
Thhalv10010991m.g Eutrema salsugineum HOM05D007237 ORTHO05D008854 6.3e-29 131.3 74 73.0
AL5G32700 Arabidopsis lyrata HOM05D007237 ORTHO05D008854 8.2e-29 131.0 74 74.3
A09p45190 Brassica napus HOM05D007237 ORTHO05D008854 1.1e-28 130.6 109 55.0
BolC8t50357H Brassica oleracea HOM05D007237 ORTHO05D008854 1.1e-28 130.6 109 55.0
BraA09t39982Z Brassica rapa HOM05D007237 ORTHO05D008854 1.1e-28 130.6 109 55.0
CARHR161870 Cardamine hirsuta HOM05D007237 ORTHO05D008854 1.1e-28 130.6 74 74.3
CARHR082100 Cardamine hirsuta HOM05D007237 ORTHO05D008854 2.4e-28 129.4 93 62.4
BcaNung06095 Brassica carinata HOM05D007237 ORTHO05D008854 5.3e-28 128.3 109 54.1
C08p27400 Brassica napus HOM05D007237 ORTHO05D008854 5.3e-28 128.3 109 54.1
BcaC02g09277 Brassica carinata HOM05D007237 ORTHO05D008854 1.2e-27 127.1 74 73.0
A04p07230 Brassica napus HOM05D007237 ORTHO05D008854 1.2e-27 127.1 74 73.0
C04p40790 Brassica napus HOM05D007237 ORTHO05D008854 1.2e-27 127.1 74 73.0
BraA05t22806Z Brassica rapa HOM05D007237 ORTHO05D008854 1.5e-27 126.7 93 61.3
A05p40750 Brassica napus HOM05D007237 ORTHO05D008854 2.0e-27 126.3 93 61.3
BcaB03g14701 Brassica carinata HOM05D007237 ORTHO05D008854 2.6e-27 125.9 93 60.2
BraA03t12704Z Brassica rapa HOM05D007237 ORTHO05D008854 3.4e-27 125.6 100 57.0
C03p42880 Brassica napus HOM05D007237 ORTHO05D008854 5.9e-27 124.8 100 57.0
BolC3t16556H Brassica oleracea HOM05D007237 ORTHO05D008854 5.9e-27 124.8 100 57.0
BcaC01g04282 Brassica carinata HOM05D007237 ORTHO05D008854 7.7e-27 124.4 93 59.1
C05p59860 Brassica napus HOM05D007237 ORTHO05D008854 7.7e-27 124.4 93 59.1
BolC5t34640H Brassica oleracea HOM05D007237 ORTHO05D008854 7.7e-27 124.4 93 59.1
ClCG09G004370 Citrullus lanatus HOM05D007237 ORTHO05D008854 1.7e-26 123.2 103 50.5
A03p35260 Brassica napus HOM05D007237 ORTHO05D008854 2.2e-26 122.9 100 56.0
Thhalv10022125m.g Eutrema salsugineum HOM05D007237 ORTHO05D008854 2.9e-26 122.5 74 71.6
THA.LOC104820127 Tarenaya hassleriana HOM05D007237 ORTHO05D008854 1.4e-25 120.2 122 52.5
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 2.5e-25 119.4 105 58.1
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 2.5e-25 119.4 105 58.1
MELO3C023529.2 Cucumis melo HOM05D007237 ORTHO05D008854 4.2e-25 118.6 103 46.6
CsaV3_7G031300 Cucumis sativus L. HOM05D007237 ORTHO05D008854 5.5e-25 118.2 103 48.5
Rhsim07G0053900 Rhododendron simsii HOM05D000102 ORTHO05D000138 2.3e-23 112.8 59 81.4
CDE10G0734 Ceratophyllum demersum HOM05D007237 ORTHO05D008854 1.3e-21 107.1 79 54.4
BcaC05g29536 Brassica carinata HOM05D007237 ORTHO05D008854 1.7e-21 106.7 79 60.8
Sed0001876 Sechium edule HOM05D007237 ORTHO05D008854 1.8e-20 103.2 97 42.3
SHI04057 Sapria himalayana HOM05D007237 ORTHO05D008854 5.3e-20 101.7 99 49.5
Glyma.10G297600 Glycine max HOM05D001848 ORTHO05D001295 7.2e-09 64.7 90 40.0
Glyma.20G248700 Glycine max HOM05D001848 ORTHO05D001295 4.7e-08 62.0 98 34.7
Nitab4.5_0011417g0010 Nicotiana tabacum HOM05D001848 ORTHO05D001295 8.0e-08 61.2 96 36.5
Solyc01g109390.3 Solanum lycopersicum HOM05D001848 ORTHO05D001295 1.0e-07 60.8 95 30.5
Phvul.007G001800 Phaseolus vulgaris HOM05D001848 ORTHO05D001295 1.4e-07 60.5 68 41.2
Rhsim12G0036500 Rhododendron simsii HOM05D001848 ORTHO05D001295 1.4e-07 60.5 66 47.0
PGSC0003DMG400025168 Solanum tuberosum HOM05D001848 ORTHO05D001295 1.4e-07 60.5 95 30.5
MBI07_g42482_MAGBIO Magnolia biondii HOM05D001848 ORTHO05D001295 1.8e-07 60.1 98 36.7
GSVIVG01031677001 Vitis vinifera HOM05D001848 ORTHO05D001295 1.8e-07 60.1 58 48.3
Cfa008554 Carpinus fangiana HOM05D001848 ORTHO05D001295 2.3e-07 59.7 90 40.0
Sopen01g051580 Solanum pennellii HOM05D001848 ORTHO05D001295 3.0e-07 59.3 95 30.5
Rhsim12G0036400 Rhododendron simsii HOM05D001848 ORTHO05D001295 5.2e-07 58.5 66 43.9
Haze_11072 Corylus avellana HOM05D001848 ORTHO05D001295 6.7e-07 58.2 92 40.2
arahy.Tifrunner.gnm1.ann1.FN75LP Arachis hypogaea HOM05D001848 ORTHO05D001295 8.8e-07 57.8 59 45.8
Dinv44234 Davidia involucrata HOM05D000090 ORTHO05D001584 8.8e-07 57.8 58 44.8
Prupe.1G179900 Prunus persica HOM05D001848 ORTHO05D001295 8.8e-07 57.8 102 37.3
Cpa.g.sc1200.2 Carica papaya HOM05D001848 ORTHO05D001295 1.5e-06 57.0 88 38.6
CAN.G322.111 Capsicum annuum HOM05D001848 ORTHO05D001295 2.0e-06 56.6 95 32.6
QL10p044006 Quercus lobata HOM05D001848 ORTHO05D001295 2.0e-06 56.6 96 37.5
CSS0044367 Camellia sinensis var. sinensis HOM05D001848 ORTHO05D001295 2.6e-06 56.2 58 44.8
Cc04_g01540 Coffea canephora HOM05D001848 ORTHO05D001295 2.6e-06 56.2 59 45.8
TWI38G0794 Tripterygium wilfordii HOM05D001848 ORTHO05D001295 2.6e-06 56.2 57 42.1
Hma1.2p1_0412F.1_g147100 Hydrangea macrophylla HOM05D001848 ORTHO05D001295 4.4e-06 55.5 65 40.0
CiPaw.01G107800 Carya illinoinensis HOM05D001848 ORTHO05D001295 5.7e-06 55.1 90 34.4
Ciclev10022967m.g Citrus clementina HOM05D001848 ORTHO05D001295 5.7e-06 55.1 95 32.6
DCAR_021418 Daucus carota HOM05D001848 ORTHO05D001295 5.7e-06 55.1 96 32.3
TAR636G3109 Trochodendron aralioides HOM05D001848 ORTHO05D001295 7.5e-06 54.7 61 41.0
VMungo0720G2320 Vigna mungo HOM05D001848 ORTHO05D001295 7.5e-06 54.7 102 32.4
Mapoly0005s0134 Marchantia polymorpha HOM05D010866 ORTHO05D008854 9.7e-06 54.3 59 47.5


User provided reference genes

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