Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.4e-27 125.6 63 100.0
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 5.5e-24 113.6 57 100.0
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 4.8e-20 100.5 58 86.2
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 9.0e-19 96.3 57 86.0
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 9.0e-19 96.3 57 86.0
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 9.0e-19 96.3 57 86.0
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 1.2e-18 95.9 55 85.5
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 2.0e-18 95.1 57 82.5
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 2.0e-18 95.1 57 82.5
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.6e-18 94.7 57 80.7
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.6e-18 94.7 57 80.7
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.6e-18 94.7 57 80.7
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 2.6e-18 94.7 57 80.7
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 3.4e-18 94.4 57 82.5
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 4.5e-18 94.0 57 82.5
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 4.5e-18 94.0 57 82.5
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 5.9e-18 93.6 57 80.7
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 7.6e-18 93.2 57 78.9
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 7.6e-18 93.2 57 78.9
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 7.6e-18 93.2 57 82.5
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 1.0e-17 92.8 57 78.9
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 1.0e-17 92.8 57 78.9
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 1.7e-17 92.0 57 82.5
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 2.9e-17 91.3 57 78.9
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 5.0e-17 90.5 54 79.6
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 5.0e-17 90.5 57 78.9
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 5.0e-17 90.5 57 80.7
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 6.5e-17 90.1 57 78.9
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 8.5e-17 89.7 55 78.2
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 8.5e-17 89.7 57 77.2
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 8.5e-17 89.7 57 80.7
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 8.5e-17 89.7 57 78.9
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 1.1e-16 89.4 56 78.6
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 1.1e-16 89.4 57 77.2
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 1.1e-16 89.4 57 77.2
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.4e-16 89.0 57 77.2
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 1.9e-16 88.6 56 76.8
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 2.5e-16 88.2 57 77.2
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 4.2e-16 87.4 57 75.4
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 5.5e-16 87.0 57 75.4
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 7.2e-16 86.7 53 77.4
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 7.2e-16 86.7 53 79.2
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 9.3e-16 86.3 57 75.4
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 9.3e-16 86.3 57 75.4
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 1.6e-15 85.5 52 80.8
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 2.1e-15 85.1 55 74.5
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 2.1e-15 85.1 53 77.4
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 2.1e-15 85.1 53 77.4
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 2.1e-15 85.1 55 74.5
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 2.7e-15 84.7 57 75.4
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 3.6e-15 84.3 54 75.9
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 4.6e-15 84.0 52 76.9
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 6.1e-15 83.6 57 73.7
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 6.1e-15 83.6 57 73.7
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 6.1e-15 83.6 52 76.9
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 7.9e-15 83.2 53 77.4
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 7.9e-15 83.2 53 77.4
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 7.9e-15 83.2 53 75.5
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 1.0e-14 82.8 55 72.7
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 1.0e-14 82.8 55 72.7
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 1.0e-14 82.8 57 70.2
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 1.3e-14 82.4 57 71.9
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 1.8e-14 82.0 51 76.5
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 3.0e-14 81.3 57 70.2
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 5.1e-14 80.5 57 70.2
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 5.1e-14 80.5 52 73.1
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 5.1e-14 80.5 52 75.0
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 6.7e-14 80.1 53 75.5
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 6.7e-14 80.1 52 76.9
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 6.7e-14 80.1 53 75.5
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 8.7e-14 79.7 43 88.4
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 1.5e-13 79.0 50 76.0
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 1.5e-13 79.0 52 71.2
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 1.5e-13 79.0 52 75.0
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 2.5e-13 78.2 57 68.4
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 2.5e-13 78.2 50 72.0
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 2.5e-13 78.2 53 73.6
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.3e-13 77.8 55 69.1
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.3e-13 77.8 55 69.1
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 5.7e-13 77.0 57 66.7
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 7.4e-13 76.6 52 73.1
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 7.4e-13 76.6 57 66.7
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 9.7e-13 76.3 41 87.8
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 9.7e-13 76.3 53 67.9
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 3.7e-12 74.3 50 72.0
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.1e-11 72.8 42 78.6
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 1.1e-11 72.8 41 85.4
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 1.1e-11 72.8 56 62.5
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 1.4e-11 72.4 55 61.8
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 3.1e-11 71.2 53 67.9
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 3.1e-11 71.2 52 65.4
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 4.1e-11 70.9 42 78.6
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 5.3e-11 70.5 52 65.4
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 2.6e-10 68.2 35 88.6
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 3.4e-10 67.8 53 64.2
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 3.4e-10 67.8 53 64.2
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 3.4e-10 67.8 53 64.2
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 1.3e-09 65.9 53 62.3
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 3.8e-09 64.3 53 60.4
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 6.5e-09 63.5 53 60.4
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 6.5e-09 63.5 53 60.4
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 6.5e-09 63.5 53 60.4
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 6.5e-09 63.5 53 60.4
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 6.5e-09 63.5 53 60.4
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 6.5e-09 63.5 53 60.4
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 8.5e-09 63.2 40 72.5
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 1.1e-08 62.8 53 60.4
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 2.5e-08 61.6 53 58.5
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 2.5e-08 61.6 53 58.5
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 3.2e-08 61.2 50 60.0
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 9.4e-08 59.7 50 56.0
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 9.4e-08 59.7 50 56.0
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 4.6e-07 57.4 50 54.0
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 4.6e-07 57.4 47 61.7
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 4.6e-07 57.4 50 54.0
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 4.6e-07 57.4 42 66.7
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 4.6e-07 57.4 50 54.0
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 7.9e-07 56.6 50 56.0
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 7.9e-07 56.6 50 56.0
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 7.9e-07 56.6 52 51.9
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 7.9e-07 56.6 52 51.9
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 3.9e-06 54.3 42 57.1
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 5.1e-06 53.9 42 64.3
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 5.1e-06 53.9 55 49.1


User provided reference genes

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