Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046242 Camellia sinensis var. sinensis HOM05D002627 ORTHO05D002823 4.9e-39 164.1 88 100.0
CSS0033434 Camellia sinensis var. sinensis HOM05D002627 ORTHO05D002823 1.9e-35 152.1 88 93.2
CSS0009845 Camellia sinensis var. sinensis HOM05D002627 ORTHO05D002823 1.2e-24 116.3 96 72.9
CSS0049766 Camellia sinensis var. sinensis HOM05D002627 ORTHO05D002823 5.8e-24 114.0 96 71.9
Dinv13122 Davidia involucrata HOM05D002627 ORTHO05D002823 1.7e-10 69.3 61 65.6
Actinidia37686 Actinidia chinensis HOM05D002627 ORTHO05D002823 2.8e-10 68.6 61 67.2
Actinidia19069 Actinidia chinensis HOM05D002627 ORTHO05D002823 6.3e-10 67.4 61 65.6
CSS0010077 Camellia sinensis var. sinensis HOM05D002627 ORTHO05D002823 6.3e-10 67.4 60 66.7
vmacro19345 Vaccinium macrocarpon HOM05D002627 ORTHO05D002823 1.1e-09 66.6 61 63.9
Rhsim12G0160600 Rhododendron simsii HOM05D002627 ORTHO05D002823 1.8e-09 65.9 59 66.1
Lj9C455G16 Lonicera japonica HOM05D002627 ORTHO05D002823 9.1e-09 63.5 61 62.3
Sopen03g032720 Solanum pennellii HOM05D002627 ORTHO05D002823 9.1e-09 63.5 61 60.7
PGSC0003DMG400024465 Solanum tuberosum HOM05D002627 ORTHO05D002823 9.1e-09 63.5 61 60.7
Lj5A119G36 Lonicera japonica HOM05D002627 ORTHO05D002823 1.2e-08 63.2 61 60.7
Rhsim08G0164100 Rhododendron simsii HOM05D002627 ORTHO05D002823 1.5e-08 62.8 67 59.7
arahy.Tifrunner.gnm1.ann1.AP0627 Arachis hypogaea HOM05D002627 ORTHO05D002823 2.0e-08 62.4 61 62.3
QL10p013948 Quercus lobata HOM05D002627 ORTHO05D002823 2.0e-08 62.4 61 60.7
vmacro16579 Vaccinium macrocarpon HOM05D002627 ORTHO05D002823 2.0e-08 62.4 61 60.7
arahy.Tifrunner.gnm1.ann1.N6T05M Arachis hypogaea HOM05D002627 ORTHO05D002823 2.6e-08 62.0 60 63.3
Glyma.05G032400 Glycine max HOM05D002627 ORTHO05D002823 2.6e-08 62.0 72 55.6
Lsat_1_v5_gn_4_74501 Lactuca sativa HOM05D002627 ORTHO05D002823 2.6e-08 62.0 60 63.3
Nitab4.5_0000642g0200 Nicotiana tabacum HOM05D002627 ORTHO05D002823 2.6e-08 62.0 61 60.7
Nitab4.5_0002875g0040 Nicotiana tabacum HOM05D002627 ORTHO05D002823 2.6e-08 62.0 61 60.7
Peaxi162Scf00017g02214 Petunia axillaris HOM05D002627 ORTHO05D002823 2.6e-08 62.0 68 54.4
Actinidia34968 Actinidia chinensis HOM05D002627 ORTHO05D002823 3.4e-08 61.6 61 60.7
Medtr4g107200 Medicago truncatula HOM05D002627 ORTHO05D002823 3.4e-08 61.6 61 62.3
Ca_21874_v3 Cicer arietinum L. HOM05D002627 ORTHO05D002823 4.5e-08 61.2 61 60.7
ClCG01G014180 Citrullus lanatus HOM05D002627 ORTHO05D002823 4.5e-08 61.2 72 51.4
MELO3C002230.2 Cucumis melo HOM05D002627 ORTHO05D002823 4.5e-08 61.2 72 51.4
CsaV3_1G008130 Cucumis sativus L. HOM05D002627 ORTHO05D002823 4.5e-08 61.2 72 51.4
Phvul.003G195900 Phaseolus vulgaris HOM05D002627 ORTHO05D002823 4.5e-08 61.2 72 54.2
TPR.G38438 Trifolium pratense HOM05D002627 ORTHO05D002823 4.5e-08 61.2 61 60.7
VMungo1215G0528 Vigna mungo HOM05D002627 ORTHO05D002823 4.5e-08 61.2 71 56.3
CiPaw.11G034000 Carya illinoinensis HOM05D002627 ORTHO05D002823 7.7e-08 60.5 61 60.7
Psat7g131040 Pisum sativum HOM05D002627 ORTHO05D002823 7.7e-08 60.5 61 59.0
CANSAT80G1418 Cannabis sativa HOM05D002627 ORTHO05D002823 1.3e-07 59.7 61 59.0
HanXRQChr08g0235641 Helianthus annuus HOM05D002627 ORTHO05D002823 1.3e-07 59.7 68 50.0
Cc04_g16140 Coffea canephora HOM05D002627 ORTHO05D002823 1.7e-07 59.3 61 57.4
Lj4g0005532 Lotus japonicus HOM05D002627 ORTHO05D002823 1.7e-07 59.3 61 57.4
Oeu038970.1 Olea europaea HOM05D002627 ORTHO05D002823 1.7e-07 59.3 62 54.8
RcHm_v2.0_Chr2g0169731 Rosa chinensis HOM05D002627 ORTHO05D002823 1.7e-07 59.3 60 53.3
Haze_07418 Corylus avellana HOM05D002627 ORTHO05D002823 2.2e-07 58.9 60 60.0
Glyma.17G094200 Glycine max HOM05D002627 ORTHO05D002823 2.2e-07 58.9 61 60.7
Sed0010058 Sechium edule HOM05D002627 ORTHO05D002823 2.2e-07 58.9 72 50.0
Manes.06G099300 Manihot esculenta HOM05D002627 ORTHO05D002823 2.9e-07 58.5 61 57.4
RcHm_v2.0_Chr7g0179941 Rosa chinensis HOM05D002627 ORTHO05D002823 2.9e-07 58.5 61 59.0
Duzib205G0221 Durio zibethinus HOM05D002627 ORTHO05D002823 3.8e-07 58.2 61 57.4
Lalb_Chr13g0298031 Lupinus albus HOM05D002627 ORTHO05D002823 3.8e-07 58.2 61 57.4
Hund02700 Selenicereus undatus HOM05D002627 ORTHO05D002823 3.8e-07 58.2 61 52.5
MSTRG.23077 Avicennia marina HOM05D002627 ORTHO05D002823 5.0e-07 57.8 61 54.1
FvH4_5g16190 Fragaria vesca HOM05D002627 ORTHO05D002823 5.0e-07 57.8 61 57.4
FAN04G2684 Fragaria x ananassa HOM05D002627 ORTHO05D002823 5.0e-07 57.8 61 57.4
Lalb_Chr12g0201291 Lupinus albus HOM05D002627 ORTHO05D002823 5.0e-07 57.8 61 57.4
BcaC06g33739 Brassica carinata HOM05D002627 ORTHO05D002823 6.5e-07 57.4 59 54.2
BolC7t44261H Brassica oleracea HOM05D002627 ORTHO05D002823 6.5e-07 57.4 59 54.2
BraA06t26973Z Brassica rapa HOM05D002627 ORTHO05D002823 6.5e-07 57.4 59 54.2
CAN.G853.37 Capsicum annuum HOM05D002627 ORTHO05D002823 6.5e-07 57.4 58 58.6
Thecc.04G069700 Theobroma cacao HOM05D002627 ORTHO05D002823 6.5e-07 57.4 72 44.4
Duzib068G0784 Durio zibethinus HOM05D002627 ORTHO05D002823 8.5e-07 57.0 61 54.1
FAN18G0871 Fragaria x ananassa HOM05D002627 ORTHO05D002823 8.5e-07 57.0 78 52.6
Ciclev10019847m.g Citrus clementina HOM05D002627 ORTHO05D002823 1.1e-06 56.6 61 57.4
FAN08G1526 Fragaria x ananassa HOM05D002627 ORTHO05D002823 1.1e-06 56.6 61 55.7
Gohir.D11G031000 Gossypium hirsutum HOM05D002627 ORTHO05D002823 1.1e-06 56.6 61 55.7
Gorai.007G033900 Gossypium raimondii HOM05D002627 ORTHO05D002823 1.1e-06 56.6 61 55.7
AL5G18040 Arabidopsis lyrata HOM05D002627 ORTHO05D002823 1.4e-06 56.2 72 43.1
AUR62021791 Chenopodium quinoa HOM05D002627 ORTHO05D002823 1.4e-06 56.2 59 54.2
AUR62021794 Chenopodium quinoa HOM05D002627 ORTHO05D002823 1.4e-06 56.2 59 54.2
Eucgr.J02157 Eucalyptus grandis HOM05D002627 ORTHO05D002823 1.4e-06 56.2 61 50.8
FAN13G1829 Fragaria x ananassa HOM05D002627 ORTHO05D002823 1.4e-06 56.2 80 50.0
Gohir.D03G089600 Gossypium hirsutum HOM05D002627 ORTHO05D002823 1.4e-06 56.2 60 56.7
Gorai.003G071800 Gossypium raimondii HOM05D002627 ORTHO05D002823 1.4e-06 56.2 60 56.7
Prupe.5G181800 Prunus persica HOM05D002627 ORTHO05D002823 1.4e-06 56.2 59 59.3
PGR083G1932 Punica granatum HOM05D002627 ORTHO05D002823 1.4e-06 56.2 60 51.7
Peaxi162Scf00129g00637 Petunia axillaris HOM05D002627 ORTHO05D002823 1.9e-06 55.8 61 49.2
Dinv33687 Davidia involucrata HOM05D002627 ORTHO05D002823 2.5e-06 55.5 61 55.7
BcaC06g30916 Brassica carinata HOM05D002627 ORTHO05D002823 3.2e-06 55.1 69 46.4
CARHR292550 Cardamine hirsuta HOM05D002627 ORTHO05D002823 3.2e-06 55.1 72 43.1
Cc07_g02820 Coffea canephora HOM05D002627 ORTHO05D002823 3.2e-06 55.1 60 50.0
FvH4_6g49700 Fragaria vesca HOM05D002627 ORTHO05D002823 3.2e-06 55.1 60 50.0
FAN09G0791 Fragaria x ananassa HOM05D002627 ORTHO05D002823 3.2e-06 55.1 55 54.5
FAN17G2864 Fragaria x ananassa HOM05D002627 ORTHO05D002823 3.2e-06 55.1 56 53.6
Lsat_1_v5_gn_2_90560 Lactuca sativa HOM05D002627 ORTHO05D002823 3.2e-06 55.1 59 54.2
Nn3g17059 Nelumbo nucifera HOM05D002627 ORTHO05D002823 3.2e-06 55.1 61 52.5
GSVIVG01007845001 Vitis vinifera HOM05D002627 ORTHO05D002823 3.2e-06 55.1 61 52.5
EL10Ac5g10867 Beta vulgaris HOM05D002627 ORTHO05D002823 4.2e-06 54.7 61 50.8
CAN.G206.84 Capsicum annuum HOM05D002627 ORTHO05D002823 4.2e-06 54.7 58 51.7
FAN05G1906 Fragaria x ananassa HOM05D002627 ORTHO05D002823 4.2e-06 54.7 55 54.5
FAN14G0027 Fragaria x ananassa HOM05D002627 ORTHO05D002823 4.2e-06 54.7 55 54.5
Gohir.A03G076100 Gossypium hirsutum HOM05D002627 ORTHO05D002823 4.2e-06 54.7 60 55.0
HanXRQChr16g0503461 Helianthus annuus HOM05D002627 ORTHO05D002823 4.2e-06 54.7 61 52.5
Potri.017G074300 Populus trichocarpa HOM05D002627 ORTHO05D002823 4.2e-06 54.7 60 50.0
Sc04g0002230 Simmondsia chinensis HOM05D002627 ORTHO05D002823 4.2e-06 54.7 61 49.2
Ah.02g112860 Amaranthus hybridus HOM05D002627 ORTHO05D002823 5.5e-06 54.3 61 49.2
AUR62008304 Chenopodium quinoa HOM05D002627 ORTHO05D002823 5.5e-06 54.3 67 50.7
ECA232G1784 Erigeron canadensis HOM05D002627 ORTHO05D002823 5.5e-06 54.3 60 53.3
Migut.D01893 Erythranthe guttata HOM05D002627 ORTHO05D002823 5.5e-06 54.3 61 49.2
Gohir.A11G028200 Gossypium hirsutum HOM05D002627 ORTHO05D002823 5.5e-06 54.3 61 54.1
HanXRQChr02g0044071 Helianthus annuus HOM05D002627 ORTHO05D002823 5.5e-06 54.3 60 51.7
HanXRQChr02g0044081 Helianthus annuus HOM05D002627 ORTHO05D002823 5.5e-06 54.3 60 51.7
HanXRQChr02g0045311 Helianthus annuus HOM05D002627 ORTHO05D002823 5.5e-06 54.3 60 51.7
Nitab4.5_0002265g0070 Nicotiana tabacum HOM05D002627 ORTHO05D002823 5.5e-06 54.3 67 47.8
Prupe.3G275400 Prunus persica HOM05D002627 ORTHO05D002823 5.5e-06 54.3 55 54.5
THA.LOC104805426 Tarenaya hassleriana HOM05D002627 ORTHO05D002823 5.5e-06 54.3 72 44.4
arahy.Tifrunner.gnm1.ann1.KN857F Arachis hypogaea HOM05D002627 ORTHO05D002823 7.2e-06 53.9 59 50.8
CSS0022026 Camellia sinensis var. sinensis HOM05D002627 ORTHO05D002823 7.2e-06 53.9 45 64.4
CiPaw.03G032500 Carya illinoinensis HOM05D002627 ORTHO05D002823 7.2e-06 53.9 59 50.8
Lj2g0010034 Lotus japonicus HOM05D002627 ORTHO05D002823 7.2e-06 53.9 65 49.2
MD14G1189100 Malus domestica HOM05D002627 ORTHO05D002823 7.2e-06 53.9 60 55.0
Nn4g22965 Nelumbo nucifera HOM05D002627 ORTHO05D002823 7.2e-06 53.9 61 52.5
PGR083G1411 Punica granatum HOM05D002627 ORTHO05D002823 7.2e-06 53.9 82 45.1
SGA_v2.0_scaffold25G10857 Striga asiatica HOM05D002627 ORTHO05D002823 7.2e-06 53.9 78 41.0
Haze_14609 Corylus avellana HOM05D001839 ORTHO05D001867 9.4e-06 53.5 55 54.5


User provided reference genes

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